-
1
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, et al. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37:W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
-
2
-
-
38049144241
-
CoryneRegNet 4.0-a reference database for corynebacterial gene regulatory networks
-
Baumbach J. 2007. CoryneRegNet 4.0-a reference database for corynebacterial gene regulatory networks. BMC Bioinformatics 8:429.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 429
-
-
Baumbach, J.1
-
3
-
-
33750959240
-
Fast index based algorithms and software for matching position specific scoring matrices
-
doi:10.1186/1471-2105-7-389
-
Beckstette M, Homann R, Giegerich R, Kurtz S. 2006. Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7:389. doi:10.1186/1471-2105-7-389.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 389
-
-
Beckstette, M.1
Homann, R.2
Giegerich, R.3
Kurtz, S.4
-
4
-
-
79955767858
-
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
-
Blom J, et al. 2011. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27:1351-1358.
-
(2011)
Bioinformatics
, vol.27
, pp. 1351-1358
-
-
Blom, J.1
-
5
-
-
34047148860
-
Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum
-
Brinkrolf K, Brune I, Tauch A. 2006. Transcriptional regulation of catabolic pathways for aromatic compounds in Corynebacterium glutamicum. Genet. Mol. Res. 5:773-789.
-
(2006)
Genet. Mol. Res.
, vol.5
, pp. 773-789
-
-
Brinkrolf, K.1
Brune, I.2
Tauch, A.3
-
6
-
-
84866177738
-
The identification of a L-glutamate-producing bacterium Corynebacterium crenatum AS 1.542
-
In Chinese
-
Chen Q, Li L-G. 1975. The identification of a L-glutamate-producing bacterium Corynebacterium crenatum AS 1.542. Acta Microbiol. Sin. (Wei Sheng Wu Xue Bao) 15:119-124. (In Chinese.)
-
(1975)
Acta Microbiol. Sin. (Wei Sheng Wu Xue Bao)
, vol.15
, pp. 119-124
-
-
Chen, Q.1
Li, L.-G.2
-
7
-
-
33745444736
-
Coregulation by phenylacetyl-coenzyme A-responsive PaaX integrates control of the upper and lower pathways for catabolism of styrene by Pseudomonas sp. strain Y2
-
del Peso-Santos, T, et al. 2006. Coregulation by phenylacetyl-coenzyme A-responsive PaaX integrates control of the upper and lower pathways for catabolism of styrene by Pseudomonas sp. strain Y2. J. Bacteriol. 188:4812-4821.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 4812-4821
-
-
del Peso-Santos, T.1
-
8
-
-
0033772905
-
Bacterial promoters triggering biodegradation of aromatic pollutants
-
Díaz E, Prieto MA. 2000. Bacterial promoters triggering biodegradation of aromatic pollutants. Curr. Opin. Biotechnol. 11:467-475.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 467-475
-
-
Díaz, E.1
Prieto, M.A.2
-
9
-
-
0039771974
-
Transcriptional regulation of the divergent paa catabolic operons for phenylacetic acid degradation in Esch- erichia coli
-
Ferrández A, García JL, Díaz E. 2000. Transcriptional regulation of the divergent paa catabolic operons for phenylacetic acid degradation in Esch- erichia coli. J. Biol. Chem. 275:12214-12222.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 12214-12222
-
-
Ferrández, A.1
García, J.L.2
Díaz, E.3
-
10
-
-
0032476062
-
Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway
-
Ferrández A, et al. 1998. Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway. J. Biol. Chem. 273:25974-25986.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 25974-25986
-
-
Ferrández, A.1
-
11
-
-
0033774938
-
Phenylacetyl-coenzyme A is the true inducer of the phenylacetic acid catabolism pathway in Pseudomonas putida U
-
García B, et al. 2000. Phenylacetyl-coenzyme A is the true inducer of the phenylacetic acid catabolism pathway in Pseudomonas putida U. Appl. Environ. Microbiol. 66:4575-4578.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4575-4578
-
-
García, B.1
-
12
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, et al. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6:343-345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
-
13
-
-
70449700033
-
Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2
-
doi:10.1186/1471-2180-9-222
-
Hamlin JNR, Bloodworth RAM, Cardona ST. 2009. Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2. BMC Microbiol. 9:222. doi:10.1186/1471-2180-9-222.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 222
-
-
Hamlin, J.N.R.1
Bloodworth, R.A.M.2
Cardona, S.T.3
-
14
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension
-
Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR. 1989. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77:61-68.
-
(1989)
Gene
, vol.77
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
15
-
-
33751016057
-
Genetic characterization of the resorcinol catabolic pathway in Corynebacterium glutamicum
-
Huang Y, et al. 2006. Genetic characterization of the resorcinol catabolic pathway in Corynebacterium glutamicum. Appl. Environ. Microbiol. 72:7238-7245.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7238-7245
-
-
Huang, Y.1
-
16
-
-
0345359589
-
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source
-
Hüser AT, et al. 2003. Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. J. Biotechnol. 106:269-286.
-
(2003)
J. Biotechnol.
, vol.106
, pp. 269-286
-
-
Hüser, A.T.1
-
17
-
-
48449090786
-
NCBI BLAST: a better web interface
-
Johnson M, et al. 2008. NCBI BLAST: a better web interface. Nucleic Acids Res. 36:5W-W9.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Johnson, M.1
-
18
-
-
41049088235
-
Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR
-
Jungwirth B, et al. 2008. Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR. FEMS Microbiol. Lett. 281:190-197.
-
(2008)
FEMS Microbiol. Lett.
, vol.281
, pp. 190-197
-
-
Jungwirth, B.1
-
19
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-as- partate-derived amino acids and vitamins
-
Kalinowski J, et al. 2003. The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-as- partate-derived amino acids and vitamins. J. Biotechnol. 104:5-25.
-
(2003)
J. Biotechnol.
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
-
20
-
-
0021278824
-
Protoplast transformation of glutamate-producing bacteria with plasmid DNA
-
Katsumata R, Ozaki A, Oka T, Furuya A. 1984. Protoplast transformation of glutamate-producing bacteria with plasmid DNA. J. Bacteriol. 159:306-311.
-
(1984)
J. Bacteriol.
, vol.159
, pp. 306-311
-
-
Katsumata, R.1
Ozaki, A.2
Oka, T.3
Furuya, A.4
-
21
-
-
4043172035
-
Regulation of penicillin G acylase gene expression in Escherichia coli by repressor PaaX and the cAMP-cAMP receptor protein complex
-
Kim HS, Kang TS, Hyun JS, Kang HS. 2004. Regulation of penicillin G acylase gene expression in Escherichia coli by repressor PaaX and the cAMP-cAMP receptor protein complex. J. Biol. Chem. 279:33253-33262.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 33253-33262
-
-
Kim, H.S.1
Kang, T.S.2
Hyun, J.S.3
Kang, H.S.4
-
22
-
-
0041429497
-
Tools for genetic engineering in the amino acid-producing bacterium Corynebacterium glutamicum
-
Kirchner O, Tauch A. 2003. Tools for genetic engineering in the amino acid-producing bacterium Corynebacterium glutamicum. J. Biotechnol. 104:287-299.
-
(2003)
J. Biotechnol.
, vol.104
, pp. 287-299
-
-
Kirchner, O.1
Tauch, A.2
-
23
-
-
47249147911
-
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator
-
Kohl TA, Baumbach J, Jungwirth B, Pühler A, Tauch A. 2008. The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator. J. Biotechnol. 135:340-350.
-
(2008)
J. Biotechnol.
, vol.135
, pp. 340-350
-
-
Kohl, T.A.1
Baumbach, J.2
Jungwirth, B.3
Pühler, A.4
Tauch, A.5
-
24
-
-
70249139791
-
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model
-
Kohl TA, Tauch A. 2009. The GlxR regulon of the amino acid producer Corynebacterium glutamicum: detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model. J. Biotechnol. 143:239-246.
-
(2009)
J. Biotechnol.
, vol.143
, pp. 239-246
-
-
Kohl, T.A.1
Tauch, A.2
-
25
-
-
30744450291
-
Characterization and use of catabolite-repressed promoters from gluconate genes in Corynebacterium glutamicum
-
Letek M, et al. 2006. Characterization and use of catabolite-repressed promoters from gluconate genes in Corynebacterium glutamicum. J. Bacteriol. 188:409-423.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 409-423
-
-
Letek, M.1
-
26
-
-
0035057115
-
The phenylacetyl-CoA catabolon: a complex catabolic unit with broad biotechnological applications
-
Luengo JM, García JL, Olivera ER. 2001. The phenylacetyl-CoA catabolon: a complex catabolic unit with broad biotechnological applications. Mol. Microbiol. 39:1434-1442.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1434-1442
-
-
Luengo, J.M.1
García, J.L.2
Olivera, E.R.3
-
27
-
-
61849136779
-
Recurring cluster and operon assembly for phenylacetate degradation genes
-
doi:10.1186/ 1471-2148-9-36
-
Martin FJ, McInerney JO. 2009. Recurring cluster and operon assembly for phenylacetate degradation genes. BMC Evol. Biol. 9:36. doi:10.1186/ 1471-2148-9-36.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 36
-
-
Martin, F.J.1
McInerney, J.O.2
-
28
-
-
0025253038
-
Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida. A specific enzyme for the catabolism of phenylacetic acid
-
Martínez-Blanco H, Reglero A, Rodriguez-Aparicio LB, Luengo JM. 1990. Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida. A specific enzyme for the catabolism of phenylacetic acid. J. Biol. Chem. 265:7084-7090.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 7084-7090
-
-
Martínez-Blanco, H.1
Reglero, A.2
Rodriguez-Aparicio, L.B.3
Luengo, J.M.4
-
29
-
-
0037561991
-
GenDB-an open source genome annotation system for prokaryote genomes
-
Meyer F, et al. 2003. GenDB-an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 31:2187-2195.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2187-2195
-
-
Meyer, F.1
-
31
-
-
21144442133
-
Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds
-
Navarro-Llorens JM, et al. 2005. Phenylacetate catabolism in Rhodococcus sp. strain RHA1: a central pathway for degradation of aromatic compounds. J. Bacteriol. 187:4497-4504.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4497-4504
-
-
Navarro-Llorens, J.M.1
-
32
-
-
75549086541
-
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
-
Novichkov PS, et al. 2010. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38:D111-D118.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Novichkov, P.S.1
-
33
-
-
77954254495
-
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
-
Novichkov PS, et al. 2010. RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38:W299-W307.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Novichkov, P.S.1
-
34
-
-
79958078463
-
Sigma factors and promoters in Corynebacterium glutamicum
-
Pátek M, Nešvera J. 2011. Sigma factors and promoters in Corynebacterium glutamicum. J. Biotechnol. 154:101-113.
-
(2011)
J. Biotechnol.
, vol.154
, pp. 101-113
-
-
Pátek, M.1
Nešvera, J.2
-
35
-
-
20544432535
-
The TetR family of transcriptional repressors
-
Ramos JL, et al. 2005. The TetR family of transcriptional repressors. Microbiol. Mol. Biol. Rev. 69:326-356.
-
(2005)
Microbiol. Mol. Biol. Rev.
, vol.69
, pp. 326-356
-
-
Ramos, J.L.1
-
36
-
-
34548219522
-
Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
-
Rodionov DA. 2007. Comparative genomic reconstruction of transcriptional regulatory networks in bacteria. Chem. Rev. 107:3467-3497.
-
(2007)
Chem. Rev.
, vol.107
, pp. 3467-3497
-
-
Rodionov, D.A.1
-
37
-
-
25644459307
-
Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction
-
doi:10.1186/ 1471-2164-6-121
-
Rückert C, et al. 2005. Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction. BMC Genomics 6:121. doi:10.1186/ 1471-2164-6-121.
-
(2005)
BMC Genomics
, vol.6
, pp. 121
-
-
Rückert, C.1
-
38
-
-
80052322974
-
Phenylacetyl-coenzyme A is an effector molecule of TetR family transcriptional repressor PaaR from Thermus thermophilus HB8
-
Sakamoto K, Agari Y, Kuramitsu S, Shinkai A. 2011. Phenylacetyl-coenzyme A is an effector molecule of TetR family transcriptional repressor PaaR from Thermus thermophilus HB8. J. Bacteriol. 193:4388-4395.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4388-4395
-
-
Sakamoto, K.1
Agari, Y.2
Kuramitsu, S.3
Shinkai, A.4
-
39
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
40
-
-
0028289983
-
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum
-
Schäfer A, et al. 1994. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145:69-73.
-
(1994)
Gene
, vol.145
, pp. 69-73
-
-
Schäfer, A.1
-
41
-
-
33744960856
-
Genomic analysis and identification of catabolic pathways for aromatic compounds in Corynebacterium glutamicum
-
Shen X-H, Huang Y, Liu S-J. 2005. Genomic analysis and identification of catabolic pathways for aromatic compounds in Corynebacterium glutamicum. Microb. Environ. 20:160-167.
-
(2005)
Microb. Environ.
, vol.20
, pp. 160-167
-
-
Shen, X.-H.1
Huang, Y.2
Liu, S.-J.3
-
42
-
-
22144441744
-
Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum
-
Shen X-H, Jiang C-Y, Huang Y, Liu Z-P, Liu S-J. 2005. Functional identification of novel genes involved in the glutathione-independent gentisate pathway in Corynebacterium glutamicum. Appl. Environ. Microbiol. 71:3442-3452.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 3442-3452
-
-
Shen, X.-H.1
Jiang, C.-Y.2
Huang, Y.3
Liu, Z.-P.4
Liu, S.-J.5
-
43
-
-
24044500645
-
Key enzymes of the protocatechuate branch of the beta-ketoadipate pathway for aromatic degradation in Corynebacterium glutamicum
-
Shen X-H, Liu S-J. 2005. Key enzymes of the protocatechuate branch of the beta-ketoadipate pathway for aromatic degradation in Corynebacterium glutamicum. Sci. China 48:241-249.
-
(2005)
Sci. China
, vol.48
, pp. 241-249
-
-
Shen, X.-H.1
Liu, S.-J.2
-
44
-
-
0036835575
-
Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1
-
Tauch A, et al. 2002. Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. Curr. Microbiol. 45:362-367.
-
(2002)
Curr. Microbiol.
, vol.45
, pp. 362-367
-
-
Tauch, A.1
-
45
-
-
77956292377
-
Bacterial phenylalanine and phenylacetate catabolic pathway revealed
-
Teufel R, et al. 2010. Bacterial phenylalanine and phenylacetate catabolic pathway revealed. Proc. Natl. Acad. Sci. U. S. A. 107:14390-14395.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 14390-14395
-
-
Teufel, R.1
-
46
-
-
79953177032
-
Studies on the mechanism of ring hydrolysis in phenylacetate degradation: a metabolic branching point
-
Teufel R, et al. 2011. Studies on the mechanism of ring hydrolysis in phenylacetate degradation: a metabolic branching point. J. Biol. Chem. 286:11021-11034.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 11021-11034
-
-
Teufel, R.1
-
47
-
-
79961140871
-
Genome-wide identification of in vivo binding sites of GlxR, a cyclic AMP receptor protein-type regulator in Corynebacterium glutamicum
-
Toyoda K, Teramoto H, Inui M, Yukawa H. 2011. Genome-wide identification of in vivo binding sites of GlxR, a cyclic AMP receptor protein-type regulator in Corynebacterium glutamicum. J. Bacteriol. 193:4123-4133.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4123-4133
-
-
Toyoda, K.1
Teramoto, H.2
Inui, M.3
Yukawa, H.4
-
48
-
-
79959327818
-
Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium
-
Yudistira H, et al. 2011. Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium. Microb. Pathog. 51:186-193.
-
(2011)
Microb. Pathog.
, vol.51
, pp. 186-193
-
-
Yudistira, H.1
-
49
-
-
77949417116
-
PcaO positively regulates pcaHG of the beta-ketoadipate pathway in Corynebacterium glutamicum
-
Zhao K-X, Huang Y, Chen X, Wang N-X, Liu S-J. 2010. PcaO positively regulates pcaHG of the beta-ketoadipate pathway in Corynebacterium glutamicum. J. Bacteriol. 192:1565-1572.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 1565-1572
-
-
Zhao, K.-X.1
Huang, Y.2
Chen, X.3
Wang, N.-X.4
Liu, S.-J.5
|