-
1
-
-
33749522239
-
Genetics: junk DNA as an evolutionary force
-
Biemont C, Vieira C, (2006) Genetics: junk DNA as an evolutionary force. Nature 443: 521-524.
-
(2006)
Nature
, vol.443
, pp. 521-524
-
-
Biemont, C.1
Vieira, C.2
-
2
-
-
77952487819
-
Jumping genes and epigenetics: Towards new species
-
Rebollo R, Horard B, Hubert B, Vieira C, (2010) Jumping genes and epigenetics: Towards new species. Gene 454: 1-7.
-
(2010)
Gene
, vol.454
, pp. 1-7
-
-
Rebollo, R.1
Horard, B.2
Hubert, B.3
Vieira, C.4
-
3
-
-
33846704345
-
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity
-
Hedges DJ, Deininger PL, (2007) Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat Res 616: 46-59.
-
(2007)
Mutat Res
, vol.616
, pp. 46-59
-
-
Hedges, D.J.1
Deininger, P.L.2
-
4
-
-
38449096702
-
The necessary junk: new functions for transposable elements
-
Muotri AR, Marchetto MC, Coufal NG, Gage FH, (2007) The necessary junk: new functions for transposable elements. Hum Mol Genet 16 Spec No. 2: R159-167.
-
(2007)
Hum Mol Genet
, vol.16
, Issue.2
-
-
Muotri, A.R.1
Marchetto, M.C.2
Coufal, N.G.3
Gage, F.H.4
-
5
-
-
62349089758
-
Molecular domestication of transposable elements: from detrimental parasites to useful host genes
-
Sinzelle L, Izsvak Z, Ivics Z, (2009) Molecular domestication of transposable elements: from detrimental parasites to useful host genes. Cell Mol Life Sci 66: 1073-1093.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 1073-1093
-
-
Sinzelle, L.1
Izsvak, Z.2
Ivics, Z.3
-
6
-
-
84866030009
-
C-GATE - catalogue of genes affected by transposable elements
-
Rebollo R, Farivar S, Mager DL, (2012) C-GATE- catalogue of genes affected by transposable elements. Mob DNA 3: 9.
-
(2012)
Mob DNA
, vol.3
, pp. 9
-
-
Rebollo, R.1
Farivar, S.2
Mager, D.L.3
-
7
-
-
44449084835
-
Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
-
Polavarapu N, Marino-Ramirez L, Landsman D, McDonald JF, Jordan IK, (2008) Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. BMC Genomics 9: 226.
-
(2008)
BMC Genomics
, vol.9
, pp. 226
-
-
Polavarapu, N.1
Marino-Ramirez, L.2
Landsman, D.3
McDonald, J.F.4
Jordan, I.K.5
-
8
-
-
23844538442
-
Transposable elements donate lineage-specific regulatory sequences to host genomes
-
Marino-Ramirez L, Lewis KC, Landsman D, Jordan IK, (2005) Transposable elements donate lineage-specific regulatory sequences to host genomes. Cytogenet Genome Res 110: 333-341.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 333-341
-
-
Marino-Ramirez, L.1
Lewis, K.C.2
Landsman, D.3
Jordan, I.K.4
-
9
-
-
42349096534
-
Transposable elements and the evolution of regulatory networks
-
Feschotte C, (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9: 397-405.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 397-405
-
-
Feschotte, C.1
-
10
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock B, (1984) The significance of responses of the genome to challenge. Science 226: 792-801.
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
McClintock, B.1
-
11
-
-
66449124318
-
Epigenetic regulation of transposable elements in plants
-
Lisch D, (2009) Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 60: 43-66.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 43-66
-
-
Lisch, D.1
-
12
-
-
58249090017
-
The evolution of RNAi as a defence against viruses and transposable elements
-
Obbard DJ, Gordon KH, Buck AH, Jiggins FM, (2009) The evolution of RNAi as a defence against viruses and transposable elements. Philos Trans R Soc Lond B Biol Sci 364: 99-115.
-
(2009)
Philos Trans R Soc Lond B Biol Sci
, vol.364
, pp. 99-115
-
-
Obbard, D.J.1
Gordon, K.H.2
Buck, A.H.3
Jiggins, F.M.4
-
13
-
-
79957844585
-
DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs
-
Karimi MM, Goyal P, Maksakova IA, Bilenky M, Leung D, et al. (2011) DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs. Cell Stem Cell 8: 676-687.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 676-687
-
-
Karimi, M.M.1
Goyal, P.2
Maksakova, I.A.3
Bilenky, M.4
Leung, D.5
-
14
-
-
77950862656
-
Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
-
Matsui T, Leung D, Miyashita H, Maksakova IA, Miyachi H, et al. (2010) Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET. Nature 464: 927-931.
-
(2010)
Nature
, vol.464
, pp. 927-931
-
-
Matsui, T.1
Leung, D.2
Miyashita, H.3
Maksakova, I.A.4
Miyachi, H.5
-
15
-
-
79961209289
-
A "mille-feuille" of silencing: Epigenetic control of transposable elements
-
Rigal M, Mathieu O (2011) A "mille-feuille" of silencing: Epigenetic control of transposable elements. Biochim Biophys Acta.
-
(2011)
Biochim Biophys Acta
-
-
Rigal, M.1
Mathieu, O.2
-
16
-
-
33745727065
-
Histone modification and the control of heterochromatic gene silencing in Drosophila
-
Ebert A, Lein S, Schotta G, Reuter G, (2006) Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res 14: 377-392.
-
(2006)
Chromosome Res
, vol.14
, pp. 377-392
-
-
Ebert, A.1
Lein, S.2
Schotta, G.3
Reuter, G.4
-
17
-
-
33846394799
-
Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster
-
Schulze SR, Wallrath LL, (2007) Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster. Annu Rev Entomol 52: 171-192.
-
(2007)
Annu Rev Entomol
, vol.52
, pp. 171-192
-
-
Schulze, S.R.1
Wallrath, L.L.2
-
18
-
-
38949130541
-
Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones
-
Yasuhara JC, Wakimoto BT, (2008) Molecular landscape of modified histones in Drosophila heterochromatic genes and euchromatin-heterochromatin transition zones. PLoS Genet 4: e16.
-
(2008)
PLoS Genet
, vol.4
-
-
Yasuhara, J.C.1
Wakimoto, B.T.2
-
19
-
-
34548784928
-
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline
-
Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, et al. (2007) Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res 35: 5430-5438.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5430-5438
-
-
Klenov, M.S.1
Lavrov, S.A.2
Stolyarenko, A.D.3
Ryazansky, S.S.4
Aravin, A.A.5
-
20
-
-
79551575925
-
Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
-
Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, et al. (2011) Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Res 21: 147-163.
-
(2011)
Genome Res
, vol.21
, pp. 147-163
-
-
Riddle, N.C.1
Minoda, A.2
Kharchenko, P.V.3
Alekseyenko, A.A.4
Schwartz, Y.B.5
-
21
-
-
84855263828
-
A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster
-
Yin H, Sweeney S, Raha D, Snyder M, Lin H, (2011) A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster. PLoS Genet 7: e1002380.
-
(2011)
PLoS Genet
, vol.7
-
-
Yin, H.1
Sweeney, S.2
Raha, D.3
Snyder, M.4
Lin, H.5
-
22
-
-
70349309426
-
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila
-
Fablet M, Lerat E, Rebollo R, Horard B, Burlet N, et al. (2009) Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. Faseb J 23: 1482-1489.
-
(2009)
Faseb J
, vol.23
, pp. 1482-1489
-
-
Fablet, M.1
Lerat, E.2
Rebollo, R.3
Horard, B.4
Burlet, N.5
-
23
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
Mito Y, Henikoff JG, Henikoff S, (2005) Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 37: 1090-1097.
-
(2005)
Nat Genet
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
24
-
-
84873520891
-
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes
-
Lerat E, Biémont C, Vieira C (2009) Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. Genome Biology and Evolution.
-
(2009)
Genome Biology and Evolution
-
-
Lerat, E.1
Biémont, C.2
Vieira, C.3
-
25
-
-
0042525765
-
Sequence divergence within transposable element families in the Drosophila melanogaster genome
-
Lerat E, Rizzon C, Biemont C, (2003) Sequence divergence within transposable element families in the Drosophila melanogaster genome. Genome Res 13: 1889-1896.
-
(2003)
Genome Res
, vol.13
, pp. 1889-1896
-
-
Lerat, E.1
Rizzon, C.2
Biemont, C.3
-
26
-
-
0012341115
-
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
-
Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, et al. (2002) The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol 3: RESEARCH0084.
-
(2002)
Genome Biol
, vol.3
-
-
Kaminker, J.S.1
Bergman, C.M.2
Kronmiller, B.3
Carlson, J.4
Svirskas, R.5
-
27
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
Finishing the euchromatic sequence of the human genome. Nature 431: 931-945.
-
Nature
, vol.431
, pp. 931-945
-
-
-
28
-
-
62349104354
-
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
-
Bartolome C, Bello X, Maside X, (2009) Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol 10: R22.
-
(2009)
Genome Biol
, vol.10
-
-
Bartolome, C.1
Bello, X.2
Maside, X.3
-
29
-
-
0032823323
-
Wake up of transposable elements following Drosophila simulans worldwide colonization
-
Vieira C, Lepetit D, Dumont S, Biemont C, (1999) Wake up of transposable elements following Drosophila simulans worldwide colonization. Mol Biol Evol 16: 1251-1255.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1251-1255
-
-
Vieira, C.1
Lepetit, D.2
Dumont, S.3
Biemont, C.4
-
30
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
-
31
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin RK, Vaughn M, Borges F, Tanurdzic M, Becker JD, et al. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 136: 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
Tanurdzic, M.4
Becker, J.D.5
-
33
-
-
84866027082
-
Epigenetics Lessons from Twins: Prospects for Autoimmune Disease
-
Ballestar E (2009) Epigenetics Lessons from Twins: Prospects for Autoimmune Disease. Clin Rev Allergy Immunol.
-
(2009)
Clin Rev Allergy Immunol
-
-
Ballestar, E.1
-
34
-
-
84891713248
-
Epigenomic consequences of immortalized plant cell suspension culture
-
Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, et al. (2008) Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol 6: 2880-2895.
-
(2008)
PLoS Biol
, vol.6
, pp. 2880-2895
-
-
Tanurdzic, M.1
Vaughn, M.W.2
Jiang, H.3
Lee, T.J.4
Slotkin, R.K.5
-
35
-
-
28944438641
-
Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup
-
Boulesteix M, Weiss M, Biemont C, (2006) Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup. Mol Biol Evol 23: 162-167.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 162-167
-
-
Boulesteix, M.1
Weiss, M.2
Biemont, C.3
-
36
-
-
67650117674
-
Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements
-
In: Schwarz S, editor, Springer Verlag
-
Vieira C, Fablet M, Lerat E (2009) Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements. In: Schwarz S, editor. Transposons and the Dynamic Genome Springer Verlag.
-
(2009)
Transposons and the Dynamic Genome
-
-
Vieira, C.1
Fablet, M.2
Lerat, E.3
-
37
-
-
33646193822
-
Inherited epigenetic variation-revisiting soft inheritance
-
Richards EJ, (2006) Inherited epigenetic variation-revisiting soft inheritance. Nat Rev Genet 7: 395-401.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 395-401
-
-
Richards, E.J.1
-
38
-
-
54149109197
-
Epigenome dynamics: a quantitative genetics perspective
-
Johannes F, Colot V, Jansen RC, (2008) Epigenome dynamics: a quantitative genetics perspective. Nat Rev Genet 9: 883-890.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 883-890
-
-
Johannes, F.1
Colot, V.2
Jansen, R.C.3
-
39
-
-
33646862254
-
The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene
-
Brookfield JF, Johnson LJ, (2006) The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene? Genetics 173: 1115-1123.
-
(2006)
Genetics
, vol.173
, pp. 1115-1123
-
-
Brookfield, J.F.1
Johnson, L.J.2
-
40
-
-
0029884117
-
Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans
-
Vieira C, Biemont C, (1996) Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans. J Mol Evol 42: 443-451.
-
(1996)
J Mol Evol
, vol.42
, pp. 443-451
-
-
Vieira, C.1
Biemont, C.2
-
41
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3: RESEARCH0034.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
-
42
-
-
34548855933
-
ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos
-
Sandmann T, Jakobsen JS, Furlong EE, (2006) ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nat Protoc 1: 2839-2855.
-
(2006)
Nat Protoc
, vol.1
, pp. 2839-2855
-
-
Sandmann, T.1
Jakobsen, J.S.2
Furlong, E.E.3
-
43
-
-
69549085006
-
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes
-
Granzotto A, Lopes FR, Lerat E, Vieira C, Carareto CM, (2009) The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. BMC Evol Biol 9: 174.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 174
-
-
Granzotto, A.1
Lopes, F.R.2
Lerat, E.3
Vieira, C.4
Carareto, C.M.5
|