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Volumn 9, Issue 1, 2009, Pages

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DROSOPHILA; DROSOPHILA MELANOGASTER; EVOLUTION; GENE DELETION; GENE INSERTION; GENE NUMBER; GENE SEQUENCE; GENUS; HELENA; INSECT GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; RETROPOSON; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; ANIMAL; DNA SEQUENCE; GENETICS; GENOME; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS;

EID: 69549085006     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-174     Document Type: Article
Times cited : (17)

References (49)
  • 1
    • 33749522239 scopus 로고    scopus 로고
    • Genetics: Junk DNA as an evolutionary force
    • DOI 10.1038/443521a, PII 443521A
    • Genetics: junk DNA as an evolutionary force. C Biemont C Vieira, Nature 2006 443 7111 521 524 10.1038/443521a 17024082 (Pubitemid 44527281)
    • (2006) Nature , vol.443 , Issue.7111 , pp. 521-524
    • Biemont, C.1    Vieira, C.2
  • 2
    • 0024505998 scopus 로고
    • Eukaryotic transposable elements and genome evolution
    • DOI 10.1016/0168-9525(89)90039-5
    • Eukaryotic transposable elements and genome evolution. DJ Finnegan, Trends Genet 1989 5 4 103 107 10.1016/0168-9525(89)90039-5 2543105 (Pubitemid 19107063)
    • (1989) Trends in Genetics , vol.5 , Issue.4 , pp. 103-107
    • Finnegan, D.J.1
  • 6
    • 0033869323 scopus 로고    scopus 로고
    • Comparative sequence analysis of plant nuclear genomes: Microcolinearity and its many exceptions
    • DOI 10.1105/tpc.12.7.1021
    • Comparative sequence analysis of plant nuclear genomes: microcolinearity and its many exceptions. JL Bennetzen, Plant Cell 2000 12 7 1021 1029 10899971 10.1105/tpc.12.7.1021 (Pubitemid 30622709)
    • (2000) Plant Cell , vol.12 , Issue.7 , pp. 1021-1029
    • Bennetzen, J.L.1
  • 7
    • 0017384865 scopus 로고
    • Reciprocal differences in female recombination associated with hybrid dysgenesis in Drosophila melanogaster
    • 411714
    • Reciprocal differences in female recombination associated with hybrid dysgenesis in Drosophila melanogaster. MG Kidwell, Genet Res 1977 30 1 77 88 411714
    • (1977) Genet Res , vol.30 , Issue.1 , pp. 77-88
    • Kidwell, M.G.1
  • 8
    • 0035901590 scopus 로고    scopus 로고
    • Genome evolution: Sex and the transposable element
    • DOI 10.1016/S0960-9822(01)00168-3
    • Genome evolution: sex and the transposable element. S Wright D Finnegan, Curr Biol 2001 11 8 R296 299 10.1016/S0960-9822(01)00168-3 11369217 (Pubitemid 32324747)
    • (2001) Current Biology , vol.11 , Issue.8
    • Wright, S.1    Finnegan, D.2
  • 9
    • 0028693337 scopus 로고
    • Genome and stresses: Reactions against aggressions, behavior of transposable elements
    • 10.1007/BF01435247 7813912
    • Genome and stresses: reactions against aggressions, behavior of transposable elements. C Arnault I Dufournel, Genetica 1994 93 1-3 149 160 10.1007/BF01435247 7813912
    • (1994) Genetica , vol.93 , Issue.1-3 , pp. 149-160
    • Arnault, C.1    Dufournel, I.2
  • 10
    • 0031891484 scopus 로고    scopus 로고
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
    • 9501496
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. DA Petrov DL Hartl, Mol Biol Evol 1998 15 3 293 302 9501496
    • (1998) Mol Biol Evol , vol.15 , Issue.3 , pp. 293-302
    • Petrov, D.A.1    Hartl, D.L.2
  • 11
    • 0029856377 scopus 로고    scopus 로고
    • High intrinsic rate of DNA loss in Drosophila
    • DOI 10.1038/384346a0
    • High intrinsic rate of DNA loss in Drosophila. DA Petrov ER Lozovskaya DL Hartl, Nature 1996 384 6607 346 349 10.1038/384346a0 8934517 (Pubitemid 26408513)
    • (1996) Nature , vol.384 , Issue.6607 , pp. 346-349
    • Petrov, D.A.1    Lozovskaya, E.R.2    Harti, D.L.3
  • 12
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • 17363976
    • Transposable elements and the epigenetic regulation of the genome. RK Slotkin R Martienssen, Nature reviews 2007 8 4 272 285 17363976
    • (2007) Nature Reviews , vol.8 , Issue.4 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 13
    • 0037358860 scopus 로고    scopus 로고
    • Structural heterogeneity and genomic distribution of Drosophila melanogaster LTR-retrotransposons
    • DOI 10.1093/molbev/msg047
    • Structural heterogeneity and genomic distribution of Drosophila melanogaster LTR-retrotransposons. L Alonso-Gonzalez A Dominguez J Albornoz, Mol Biol Evol 2003 20 3 401 409 10.1093/molbev/msg047 12644561 (Pubitemid 36427175)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.3 , pp. 401-409
    • Alonso-Gonzalez, L.1    Dominguez, A.2    Albornoz, J.3
  • 14
    • 0345211542 scopus 로고    scopus 로고
    • Polymorphism in structure of the retrotransposable element 412 in Drosophila simulans and D. melanogaster populations
    • DOI 10.1016/S0378-1119(99)00126-2, PII S0378111999001262
    • Polymorphism in structure of the retrotransposable element 412 in Drosophila simulans and D. melanogaster populations. G Cizeron C Biemont, Gene 1999 232 2 183 190 10.1016/S0378-1119(99)00126-2 10352229 (Pubitemid 29305330)
    • (1999) Gene , vol.232 , Issue.2 , pp. 183-190
    • Cizeron, G.1    Biemont, C.2
  • 16
    • 0042525765 scopus 로고    scopus 로고
    • Sequence divergence within transposable element families in the Drosophila melanogaster genome
    • 12869581
    • Sequence divergence within transposable element families in the Drosophila melanogaster genome. E Lerat C Rizzon C Biemont, Genome Res 2003 13 8 1889 1896 12869581
    • (2003) Genome Res , vol.13 , Issue.8 , pp. 1889-1896
    • Lerat, E.1    Rizzon, C.2    Biemont, C.3
  • 17
  • 18
    • 42549138756 scopus 로고    scopus 로고
    • Losing helena: The extinction of a drosophila line-like element
    • DOI 10.1186/1471-2164-9-149
    • Losing helena: the extinction of a drosophila line-like element. R Rebollo E Lerat LL Kleine C Biemont C Vieira, BMC Genomics 2008 9 149 18377637 10.1186/1471-2164-9-149 (Pubitemid 351587119)
    • (2008) BMC Genomics , vol.9 , pp. 149
    • Rebollo, R.1    Lerat, E.2    Kleine, L.L.3    Biemont, C.4    Vieira, C.5
  • 19
    • 0036900274 scopus 로고    scopus 로고
    • Patterns of insertion and deletion in contrasting chromatin domains
    • 12446812
    • Patterns of insertion and deletion in contrasting chromatin domains. JP Blumenstiel DL Hartl ER Lozovsky, Mol Biol Evol 2002 19 12 2211 2225 12446812
    • (2002) Mol Biol Evol , vol.19 , Issue.12 , pp. 2211-2225
    • Blumenstiel, J.P.1    Hartl, D.L.2    Lozovsky, E.R.3
  • 20
    • 0029127021 scopus 로고
    • Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis
    • 7644536 10.1073/pnas.92.17.8050
    • Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis. DA Petrov JL Schutzman DL Hartl ER Lozovskaya, Proc Natl Acad Sci USA 1995 92 17 8050 8054 7644536 10.1073/pnas.92.17.8050
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.17 , pp. 8050-8054
    • Petrov, D.A.1    Schutzman, J.L.2    Hartl, D.L.3    Lozovskaya, E.R.4
  • 21
    • 0034569450 scopus 로고    scopus 로고
    • A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster
    • 11178266 10.1186/gb-2000-1-6-research0012
    • A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster. E Berezikov A Bucheton I Busseau, Genome Biol 2000 1 6 RESEARCH0012 11178266 10.1186/gb-2000-1-6-research0012
    • (2000) Genome Biol , vol.1 , Issue.6 , pp. 0012
    • Berezikov, E.1    Bucheton, A.2    Busseau, I.3
  • 22
    • 34547471449 scopus 로고    scopus 로고
    • Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
    • DOI 10.1073/pnas.0702552104
    • Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. CM Bergman D Bensasson, Proc Natl Acad Sci USA 2007 104 27 11340 11345 17592135 10.1073/pnas.0702552104 (Pubitemid 47175142)
    • (2007) Proceedings of the National Academy of Sciences of the United States of America , vol.104 , Issue.27 , pp. 11340-11345
    • Bergman, C.M.1    Bensasson, D.2
  • 27
    • 0029049790 scopus 로고
    • BS a novel LINE-like element in Drosophila melanogaster
    • 7753626 10.1093/nar/23.8.1354
    • BS a novel LINE-like element in Drosophila melanogaster. A Udomkit S Forbes G Dalgleish DJ Finnegan, Nucleic acids research 1995 23 8 1354 1358 7753626 10.1093/nar/23.8.1354
    • (1995) Nucleic Acids Research , vol.23 , Issue.8 , pp. 1354-1358
    • Udomkit, A.1    Forbes, S.2    Dalgleish, G.3    Finnegan, D.J.4
  • 28
    • 0036274271 scopus 로고    scopus 로고
    • On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster
    • 12032249
    • On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. C Bartolome X Maside B Charlesworth, Mol Biol Evol 2002 19 6 926 937 12032249
    • (2002) Mol Biol Evol , vol.19 , Issue.6 , pp. 926-937
    • Bartolome, C.1    Maside, X.2    Charlesworth, B.3
  • 29
    • 0024836563 scopus 로고
    • The population genetics of Drosophila transposable elements
    • 10.1146/annurev.ge.23.120189.001343 2559652
    • The population genetics of Drosophila transposable elements. B Charlesworth CH Langley, Annual review of genetics 1989 23 251 287 10.1146/annurev.ge.23.120189.001343 2559652
    • (1989) Annual Review of Genetics , vol.23 , pp. 251-287
    • Charlesworth, B.1    Langley, C.H.2
  • 30
    • 0345730821 scopus 로고    scopus 로고
    • Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans
    • 14668370
    • Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans. C Rizzon E Martin G Marais L Duret L Segalat C Biemont, Genetics 2003 165 3 1127 1135 14668370
    • (2003) Genetics , vol.165 , Issue.3 , pp. 1127-1135
    • Rizzon, C.1    Martin, E.2    Marais, G.3    Duret, L.4    Segalat, L.5    Biemont, C.6
  • 31
    • 34247855012 scopus 로고    scopus 로고
    • Evolutionary pathways of the tirant LTR retrotransposon in the Drosophila melanogaster subgroup of species
    • DOI 10.1007/s00239-006-0108-9
    • Evolutionary pathways of the tirant LTR retrotransposon in the Drosophila melanogaster subgroup of species. M Fablet S Souames C Biemont C Vieira, J Mol Evol 2007 64 4 438 447 10.1007/s00239-006-0108-9 17390093 (Pubitemid 46697305)
    • (2007) Journal of Molecular Evolution , vol.64 , Issue.4 , pp. 438-447
    • Fablet, M.1    Souames, S.2    Biemont, C.3    Vieira, C.4
  • 32
    • 0024058618 scopus 로고
    • The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence
    • 2900794
    • The rosy region of Drosophila melanogaster and Drosophila simulans. I. Contrasting levels of naturally occurring DNA restriction map variation and divergence. CF Aquadro KM Lado WA Noon, Genetics 1988 119 4 875 888 2900794
    • (1988) Genetics , vol.119 , Issue.4 , pp. 875-888
    • Aquadro, C.F.1    Lado, K.M.2    Noon, W.A.3
  • 33
    • 0345306751 scopus 로고    scopus 로고
    • The Origins of Genome Complexity
    • DOI 10.1126/science.1089370
    • The origins of genome complexity. M Lynch JS Conery, Science 2003 302 5649 1401 1404 10.1126/science.1089370 14631042 (Pubitemid 37452183)
    • (2003) Science , vol.302 , Issue.5649 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 34
    • 0031452212 scopus 로고    scopus 로고
    • Population genetics models of transposable elements
    • 10.1023/A:1018310418744 9440281
    • Population genetics models of transposable elements. JF Brookfield RM Badge, Genetica 1997 100 1-3 281 294 10.1023/A:1018310418744 9440281
    • (1997) Genetica , vol.100 , Issue.1-3 , pp. 281-294
    • Brookfield, J.F.1    Badge, R.M.2
  • 35
    • 0027178798 scopus 로고
    • Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex
    • 8355601
    • Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. J Hey RM Kliman, Mol Biol Evol 1993 10 4 804 822 8355601
    • (1993) Mol Biol Evol , vol.10 , Issue.4 , pp. 804-822
    • Hey, J.1    Kliman, R.M.2
  • 36
    • 0027389296 scopus 로고
    • DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex
    • DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex. RM Kliman J Hey, Genetics 1993 133 2 375 387 8436278 (Pubitemid 23033491)
    • (1993) Genetics , vol.133 , Issue.2 , pp. 375-387
    • Kliman, R.M.1    Hey, J.2
  • 37
    • 0027022771 scopus 로고
    • Evolution of the transposable element mariner in the Drosophila melanogaster species group
    • 10.1007/BF00133709 1334916
    • Evolution of the transposable element mariner in the Drosophila melanogaster species group. P Capy JR David DL Hartl, Genetica 1992 86 1-3 37 46 10.1007/BF00133709 1334916
    • (1992) Genetica , vol.86 , Issue.1-3 , pp. 37-46
    • Capy, P.1    David, J.R.2    Hartl, D.L.3
  • 38
    • 37249003202 scopus 로고    scopus 로고
    • Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily
    • DOI 10.1534/genetics.107.078683
    • Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily. CS McBride JR Arguello BC O'Meara, Genetics 2007 177 3 1395 1416 18039874 10.1534/genetics.107.078683 (Pubitemid 350277040)
    • (2007) Genetics , vol.177 , Issue.3 , pp. 1395-1416
    • McBride, C.S.1    Arguello, J.R.2
  • 39
    • 0035038136 scopus 로고    scopus 로고
    • The X element, a novel LINE transposable element from Drosophila melanogaster
    • DOI 10.1007/s004380000437
    • The X element, a novel LINE transposable element from Drosophila melanogaster. M Tudor AJ Davis M Feldman M Grammatikaki K O'Hare, Mol Genet Genomics 2001 265 3 489 496 10.1007/s004380000437 11405632 (Pubitemid 33702041)
    • (2001) Molecular Genetics and Genomics , vol.265 , Issue.3 , pp. 489-496
    • Tudor, M.1    Davis, A.J.2    Feldman, M.3    Grammatikaki, M.4    O'Hare, K.5
  • 41
    • 0037045398 scopus 로고    scopus 로고
    • ORF-FINDER: A vector for high-throughput gene identification
    • DOI 10.1016/S0378-1119(01)00819-8, PII S0378111901008198
    • ORF-FINDER: a vector for high-throughput gene identification. IT Rombel KF Sykes S Rayner SA Johnston, Gene 2002 282 1-2 33 41 10.1016/S0378-1119(01) 00819-8 11814675 (Pubitemid 34117559)
    • (2002) Gene , vol.282 , Issue.1-2 , pp. 33-41
    • Rombel, I.T.1    Sykes, K.F.2    Rayner, S.3    Johnston, S.A.4
  • 43
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucleic acids research 2004 32 5 1792 1797 15034147 10.1093/nar/gkh340 (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 44
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • 10.1111/j.1096-0031.1989.tb00480.x
    • PHYLIP - Phylogeny Inference Package (Version 3.2). J Felsenstein, Cladistics 1989 5 3 10.1111/j.1096-0031.1989.tb00480.x
    • (1989) Cladistics , vol.5 , pp. 3
    • Felsenstein, J.1
  • 45
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • 10.1016/S0168-9525(00)02024-2 10827456
    • EMBOSS: the European Molecular Biology Open Software Suite. P Rice I Longden A Bleasby, Trends Genet 2000 16 6 276 277 10.1016/S0168-9525(00)02024-2 10827456
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417 10.1093/nar/22.22.4673
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic acids research 1994 22 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • DOI 10.1093/molbev/msn067
    • An improved general amino acid replacement matrix. SQ Le O Gascuel, Mol Biol Evol 2008 25 7 1307 1320 10.1093/molbev/msn067 18367465 (Pubitemid 351882003)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 48
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Systematic biology 2003 52 5 696 704 10.1080/10635150390235520 14530136 (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 49
    • 0022745501 scopus 로고
    • Regulation of synthesis of larval serum proteins after transplantation of larval fat body into adult Drosophila melanogaster
    • 10.1016/0012-1606(86)90039-4 3089855
    • Regulation of synthesis of larval serum proteins after transplantation of larval fat body into adult Drosophila melanogaster. T Jowett TM Rizki RM Rizki, Developmental biology 1986 116 1 23 30 10.1016/0012-1606(86)90039-4 3089855
    • (1986) Developmental Biology , vol.116 , Issue.1 , pp. 23-30
    • Jowett, T.1    Rizki, T.M.2    Rizki, R.M.3


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