Functional Metagenomics of Escherichia coli O157:H7 Interactions with Spinach Indigenous Microorganisms during Biofilm Formation

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Carter, Michelle Q ^a   Xue, Kai ^b   Brandl, Maria T ^a   Liu, Feifei ^b   Wu, Liyou ^b   Louie, Jacqueline W ^a   Mandrell, Robert E ^a   Zhou, Jizhong ^b,c,d  

^a WESTERN REGIONAL RESEARCH CENTER   (United States)

^b UNIVERSITY OF OKLAHOMA   (United States)

^c TSINGHUA UNIVERSITY   (China)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; GENOMIC DNA; NITROGEN; PHOSPHORUS; STAINLESS STEEL;

ANALYTICAL PARAMETERS; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GROWTH; BACTERIAL TRANSMISSION; BACTERIUM ADHERENCE; BIOFILM; CARBON CYCLING; CONTROLLED STUDY; EQUIPMENT; ESCHERICHIA COLI O157; FOOD PROCESSING; GENE FUNCTION; GENETIC VARIABILITY; LIQUID CULTURE; MACRONUTRIENT; METAGENOMICS; MICROBIAL DIVERSITY; NITROGEN CYCLING; NONHUMAN; NUTRIENT UPTAKE; ORGANISMAL INTERACTION; PHOSPHORUS CYCLE; PLANT LEAF; SHANNON WEINER INDEX H; SPECIES INVASION; SPINACH;

BACTERIAL ADHESION; BIOFILMS; CARBON; COLONY COUNT, MICROBIAL; ESCHERICHIA COLI O157; FOOD MICROBIOLOGY; GENOME, BACTERIAL; METAGENOMICS; NITROGEN; PHOSPHORUS; PLANT LEAVES; SPINACIA OLERACEA; STAINLESS STEEL; TIME FACTORS;

ESCHERICHIA COLI; SPINACIA OLERACEA;

EID: 84866006484     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0044186     Document Type: Article

References (33)

1. Mandrell RE (2009) Enteric human pathogens associated with fresh produce: sources, transport and ecology. In: Fan X NB, Doona CJ, Feeherry F, and Gravani RB, editor. Microbial Safety of Fresh Produce. Ames, IA: IFT Press/Wiley-Blackwell Publishing. 5-41.
2. Lindow SE, Brandl MT, (2003) Microbiology of the phyllosphere. Appl Environ Microbiol 69: 1875-1883.
3. Brandl MT, (2006) Fitness of human enteric pathogens on plants and implications for food safety. Annu Rev Phytopathol 44: 367-392.
4. Tyler HL, Triplett EW, (2008) Plants as a habitat for beneficial and/or human pathogenic bacteria. Annu Rev Phytopathol 46: 53-73.
5. Teplitski M, Barak JD, Schneider KR, (2009) Human enteric pathogens in produce: un-answered ecological questions with direct implications for food safety. Curr Opin Biotechnol 20: 166-171.
6. Villanueva-Suarez MJ, Redondo-Cuenca A, Rodriguez-Sevilla MD, de las Heras Martinez M, (2003) Characterization of nonstarch polysaccharides content from different edible organs of some vegetables, determined by GC and HPLC: comparative study. J Agric Food Chem 51: 5950-5955.
7. Kyle JL, Parker CT, Goudeau D, Brandl MT, (2010) Transcriptome analysis of Escherichia coli O157: H7 exposed to lysates of lettuce leaves. Appl Environ Microbiol 76: 1375-1387.
8. Brandl MT, (2008) Plant lesions promote the rapid multiplication of Escherichia coli O157: H7 on postharvest lettuce. Appl Environ Microbiol 74: 5285-5289.
9. Lopez-Velasco G, Welbaum GE, Falkinham III JO, Ponder MA, (2011) Phyllopshere bacterial community structure of spinach (Spinacia oleracea) as affected by cultivar and environmental conditions at time of harvest. Diversity 3: 721-738.
10. Delmotte N, Knief C, Chaffron S, Innerebner G, Roschitzki B, et al. (2009) Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci U S A 106: 16428-16433.
11. He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, et al. (2007) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1: 67-77.
12. He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, et al. (2010) GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 4: 1167-1179.
13. Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, et al. (2010) Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 330: 204-208.
14. Liang Y, Van Nostrand JD, Deng Y, He Z, Wu L, et al. (2011) Functional gene diversity of soil microbial communities from five oil-contaminated fields in China. ISME J 5: 403-413.
15. Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, et al. (2012) Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. ISME J 6: 451-460.
16. Wang F, Zhou H, Meng J, Peng X, Jiang L, et al. (2009) GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proc Natl Acad Sci U S A 106: 4840-4845.
17. Zhou J, Xue K, Xie J, Deng Y, Wu L, et al. (2012) Microbial mediation of carbon-cycle feedbacks to climate warming. Nature Clim Change 2: 106-111.
18. Rivas L, Dykes GA, Fegan N, (2007) A comparative study of biofilm formation by Shiga toxigenic Escherichia coli using epifluorescence microscopy on stainless steel and a microtitre plate method. J Microbiol Methods 69: 44-51.
19. Wu L, Liu X, Schadt CW, Zhou J, (2006) Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl Environ Microbiol 72: 4931-4941.
20. Hill MO, Gauch HG, (1980) Detrended correspondence analysis-an improved ordination technique. Vegetation 42: 12.
21. Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157: H7 and genomic comparison with a laboratory strain K-12. DNA Res 8: 11-22.
22. Blattner FR, Plunkett G, 3rd, Bloch CA, Perna NT, Burland V, et al (1997) The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1462.
23. Kreft JU, (2004) Biofilms promote altruism. Microbiology 150: 2751-2760.
24. Castonguay MH, van der Schaaf S, Koester W, Krooneman J, van der Meer W, et al. (2006) Biofilm formation by Escherichia coli is stimulated by synergistic interactions and co-adhesion mechanisms with adherence-proficient bacteria. Res Microbiol 157: 471-478.
25. Klayman BJ, Volden PA, Stewart PS, Camper AK, (2009) Escherichia coli O157: H7 requires colonizing partner to adhere and persist in a capillary flow cell. Environ Sci Technol 43: 2105-2111.
26. Lopez-Velasco G, Tydings HA, Boyer RR, Falkinham JO, 3rd, Ponder MA (2012) Characterization of interactions between Escherichia coli O157: H7 with epiphytic bacteria in vitro and on spinach leaf surfaces. Int J Food Microbiol 153: 351-357.
27. Cooley MB, Chao D, Mandrell RE, (2006) Escherichia coli O157: H7 survival and growth on lettuce is altered by the presence of epiphytic bacteria. J Food Prot 69: 2329-2335.
28. Lopez-Velasco G, Welbaum GE, Boyer RR, Mane SP, Ponder MA, (2011) Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons. J Appl Microbiol 110: 1203-1214.
29. Kinkel LL, (1997) Microbial population dynamics on leaves. Annu Rev Phytopathol 35: 327-347.
30. Edwards JL, Smith DL, Connolly J, McDonald JE, Cox MJ, et al. (2010) Identification of carbohydrate metabolism genes in the metagenome of a marine biofilmcommunity shown to be dominated by gammaproteobacteria and bacteroidetes. Genes 1: 15.
31. Brandl MT, Carter MQ, Parker CT, Chapman MR, Huynh S, et al. (2011) Salmonella biofilm formation on Aspergillus niger involves cellulose-chitin interactions. PLoS One 6: e25553.
32. Hogan DA, Kolter R, (2002) Pseudomonas-Candida interactions: an ecological role for virulence factors. Science 296: 2229-2232.
33. Mueller RS, Dill BD, Pan C, Belnap CP, Thomas BC, et al. (2011) Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environ Microbiol 13: 2279-2292.