Atomic force microscopy: A nanoscopic view of microbial cell surfaces

Micron

Volumn 43, Issue 12, 2012, Pages 1312-1322

  Dorobantu, Loredana S ^a   Goss, Greg G ^a   Burrell, Robert E ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

AFM force measurements; AFM imaging; Microorganisms; Physico chemical characterization

Indexed keywords

AFM; AFM IMAGING; AQUEOUS LIQUIDS; ATOMIC FORCE MICROSCOPE (AFM); BACTERIAL ADHESION; BACTERIAL INFECTIONS; BIOFILM FORMATION; BIOLOGICAL SAMPLES; FOOD SCIENCE; FORCE SPECTROSCOPY; HIGH RESOLUTION; IMAGING TOOLS; MICROBIAL CELLS; MICROBIAL INTERACTIONS; MICROBIAL RESEARCH; MICROBIAL SURFACES; NANOSCALE ARCHITECTURES; PHYSICO-CHEMICAL CHARACTERIZATION; PHYSIOLOGICAL ENVIRONMENT;

ATOMIC FORCE MICROSCOPY; CELL MEMBRANES; MICROORGANISMS;

BACTERIA;

ARTICLE; ATOMIC FORCE MICROSCOPY; BACTERIUM; CHEMISTRY; METHODOLOGY; PHYSICAL CHEMISTRY; SURFACE PROPERTY; ULTRASTRUCTURE;

BACTERIA; MICROSCOPY, ATOMIC FORCE; PHYSICOCHEMICAL PHENOMENA; SURFACE PROPERTIES;

BACTERIA (MICROORGANISMS);

EID: 84865818668     PISSN: 09684328     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micron.2012.05.005     Document Type: Article

References (72)

1. Alsteens D., Dupres V., Klotz S.A., Gaur N.K., Lipke P.N., Dufrêne Y.F. Unfolding individual Als5p adhesion proteins on live cells. ACS Nano 2009, 3:1677-1682.
2. Alsteens D., Verbelen C., Dague E., Raze D., Baulard A.R., Dufrene Y.F. Organization of the mycobacterial cell wall: a nanoscale view. Pflugers Archiv - European Journal of Physiology 2008, 456:117-125.
3. Ando T., Uchihashi T., Fukuma T. High-speed atomic force microscopy for nano-visualization of dynamic biomolecular processes. Progress in Surface Science 2008, 83:337-437.
4. Andre G., Deghorain M., Bron P.A., van Swam I.I., Kleerebezem M., Hols P., Dufrene Y.F. Fluorescence and atomic force microscopy imaging of wall teichoic acids in Lactobacillus plantarum. ACS Chemical Biology 2011, 6:366-376.
5. Andre G., Kulakauskas S., Chapot-Chartier M., Navet B., Deghorain M., Bernard E., Dufrene Y.F. Imaging the nanoscale organization of peptidoglycan in living Lactococcus lactis cells. Nature Communications 2010, 1:1-8.
6. Beckmann M.A., Venkataraman S., Doktycz M.J., Nataro J.P., Sullivan C.J., Morrell-Falvey J.L., Allison D.P. Measuring cell surface elasticity on enteroaggregative Escherichia coli wild type and dispersin mutant by AFM. Ultramicroscopy 2006, 106:695-702.
7. Binnig G., Quate C., Gerber C. Atomic force microscope. Physical Review Letters 1986, 56:930-933.
8. Bolshakova A., Kiselyova O., Filonov A., Frolova O., Lyubchenko Y., Yaminsky I. Comparative studies of bacteria with an atomic force microscopy operating in different modes. Ultramicroscopy 2001, 86:121-128.
9. Bustamante C. Entropic elasticity of lambda-phage DNA. Science 1994, 265:1599-1600.
10. Camesano T., Natan M., Logan B. Observation of changes in bacterial cell morphology using tapping mode atomic force microscopy. Langmuir 2000, 16:4563-4572.
11. Dague E., Jauvert E., Laplatine L., Viallet B., Thibault C., Ressier L. Assembly of live micro-organisms on microstructured PDMS stamps by convective/capillary deposition for AFM bio-experiments. Nanotechnology 2011, 22:395102.
12. Dague E., Alsteens D., Latge J., Verbelen C., Raze D., Baulard A.R., Dufrene Y.F. Chemical force microscopy of single live cells. Nano Letters 2007, 7:3026-3030.
13. Diaz C., Schilardi P.L., Salvarezza R.C., Fernandez Lorenzo de Mele M. Have flagella a preferred orientation during early stages of biofilm formation? AFM study using patterned substrates. Colloids and Surfaces B: Biointerfaces 2011, 82:536-542.
14. Doktycz M., Sullivan C., Hoyt P., Pelletier D., Wu S., Allison D. AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces. Ultramicroscopy 2003, 97:209-216.
15. Dorobantu L.S., Bhattacharjee S., Foght J.M., Gray M.R. Atomic force microscopy measurement of heterogeneity in bacterial surface hydrophobicity. Langmuir 2008, 24:4944-4951.
16. Dorobantu L.S., Bhattacharjee S., Foght J.M., Gray M.R. Analysis of force interactions between AFM tips and hydrophobic bacteria using DLVO theory. Langmuir 2009, 25:6968-6976.
17. Dorobantu L.S., Gray M.R. Application of atomic force microscopy in bacterial research. Scanning 2010, 32:74-96.
18. Dsouza S., Melo J., Deshpande A., Nadkarni G. Immobilization of yeast-cells by adhesion to glass-surface using polyethylenimine. Biotechnology Letters 1986, 8:643-648.
19. Ducker W., Senden T., Pashley R. Direct measurement of colloidal forces using an atomic force microscope. Nature 1991, 353:239-241.
20. Dufrene Y. Atomic force microscopy, a powerful tool in microbiology. Journal of Bacteriology 2002, 184:5205-5213.
21. Dufrene Y. Refining our perception of bacterial surfaces with the atomic force microscope. Journal of Bacteriology 2004, 186:3283-3285.
22. Dufrene Y.F. Atomic force microscopy and chemical force microscopy of microbial cells. Nature Protocols 2008, 3:1132-1138.
23. Dupres V., Alsteens D., Andre G., Verbelen C., Dufrêne Y.F. Fishing single molecules on live cells. Nanotoday 2009, 4:262-268.
24. Dupres V., Menozzi F.D., Locht C., Clare B.H., Abbott N.L., Cuenot S., Bompard C., Raze D., Dufrene Y.F. Nanoscale mapping and functional analysis of individual adhesins on living bacteria. Nature Methods 2005, 2:515-520.
25. Francis L.W., Lewis P.D., Wright C.J., Conlan R.S. Atomic force microscopy comes of age. Biology of the cell 2010, 102:133-143.
26. Francius G., Alsteens D., Dupres V., Lebeer S., De Keersmaecker S., Vanderleyden J., Dufrene Y.F. Stretching polysaccharides on live cells using single molecule force spectroscopy. Nature Protocols 2009, 4:939-946.
27. Francius G., Lebeer S., Alsteens D., Wildling L., Gruber H.J., Hols P., Dufrene Y.F. Detection, localization, and conformational analysis of single polysaccharide molecules on live bacteria. ACS Nano 2008, 2:1921-1929.
28. Frisbie C., Rozsnyai L., Noy A., Wrighton M., Lieber C. Functional-group imaging by chemical force microscopy. Science 1994, 265:2071-2074.
29. Fukuma T., Kobayashi K., Matsushige K., Yamada H. True atomic resolution in liquid by frequency-modulation atomic force microscopy. Applied Physics Letters 2005, 87:66-70.
30. Gad M., Itoh A., Ikai A. Mapping cell wall polysaccharides of living microbial cells using atomic force microscopy. Cell Biology International 1997, 21:697-706.
31. Gillis A., Dupres V., Delestrait G., Mahillon J., Dufrene Y.F. Nanoscale imaging of Bacillus thuringiensis flagella using atomic force microscopy. Nanoscale 2012, 4:1585-1591.
32. Gould S., Drake B., Prater C., Weisenhorn A., Manne S., Hansma H., Quate C. From atoms to integrated-circuit chips, blood-cells, and bacteria with the atomic force microscope. Journal of Vacuum Science & Technology A - Vacuum, Surfaces, and Films 1990, 8:369-373.
33. Hayhurst E.J., Kailas L., Hobbs J.K., Foster S.J. Cell wall peptidoglycan architecture in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:14603-21460.
34. Helenius J., Heisenberg C., Gaub H.E., Muller D.J. Single-cell force spectroscopy. Journal of Cell Science 2008, 121:1785-1791.
35. Hinterdorfer P., Dufrene Y. Detection and localization of single molecular recognition events using atomic force microscopy. Nature Methods 2006, 3:347-355.
36. Horejs C., Ristl R., Tscheliessnig R., Sleytr U.B., Pum D. Single-molecule force spectroscopy reveals the individual mechanical unfolding pathways of a surface layer protein. Journal of Biological Chemistry 2011, 286:27416-27424.
37. Hu Y., Ulstrup J., Zhang J., Molin S., Dupres V. Adhesive properties of Staphylococcus epidermidis probed by atomic force microscopy. Physical Chemistry Chemical Physics 2011, 13:9995-10003.
38. Kailas L., Ratcliffe E.C., Hayhurst E.J., Walker M.G., Foster S.J., Hobbs J.K. Immobilizing live bacteria for AFM imaging of cellular processes. Ultramicroscopy 2009, 109:775-780.
39. Kang S., Elimelech M. Bioinspired single bacterial cell force spectroscopy. Langmuir 2009, 25:9656-9659.
40. Kasas S., Ikai A. A method for anchoring round shaped cells for atomic-force microscope imaging. Biophysical Journal 1995, 68:1678-1680.
41. Klis F.M., Boorsma A., De Groot P.W.J. Cell wall construction in Saccharomyces cerevisiae. Yeast 2006, 23:185-202.
42. Lower S., Hochella M., Beveridge T. Bacterial recognition of mineral surfaces: nanoscale interactions between Shewanella and alpha-FeOOH. Science 2001, 292:1360-1363.
43. Lower S., Tadanier C., Hochella M. Measuring interfacial and adhesion forces between bacteria and mineral surfaces with biological force microscopy. Geochimica Et Cosmochimica Acta 2000, 64:3133-3139.
44. Madigan M.T., Martinko J.M., Stahl D.A., Clark D.P. Brock Biology of Microorganisms 2010, Pearson Benjamin-Cummings, San Francisco. 13th ed.
45. Marszalek P.E., Oberhauser A.F., Pang Y.P., Fernandez J.M. Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring. Nature 1998, 396:661-664.
46. Marszalek P.E., Dufrêne Y.D. Stretching single polysaccharides and proteins using atomic force microscopy. Chemical Society Reviews 2012, 41:3523-3534.
47. Meyer R.L., Zhou X., Tang L., Arpanaei A., Kingshott P., Besenbacher F. Immobilisation of living bacteria for AFM imaging under physiological conditions. Ultramicroscopy 2010, 110:1349-1357.
48. Muller D.J., Engel A. Atomic force microscopy and spectroscopy of native membrane proteins. Nature Protocols 2007, 2:2191-2197.
49. Mueller D.J., Helenius J., Alsteens D., Dufrene Y.F. Force probing surfaces of living cells to molecular resolution. Nature Chemical Biology 2009, 5:383-390.
50. Mueller D.J., Krieg M., Alsteens D., Dufrene Y.F. New frontiers in atomic force microscopy: analyzing interactions from single-molecules to cells. Current Opinion in Biotechnology 2009, 20:4-13.
51. Mueller D.J., Dufrene Y.F. Atomic force microscopy: a nanoscopic window on the cell surface. Trends in Cell Biology 2011, 21:461-469.
52. Noy A. Chemical force microscopy of chemical and biological interactions. Surface and Interface Analysis 2006, 38:1429-1441.
53. Oberhauser A.F., Marszalek P.E., Erickson H.P., Fernandez J.M. The molecular elasticity of the extracellular matrix protein tenascin. Nature 1998, 393:181-185.
54. Park B., Abu-Lail N.I. Atomic force microscopy investigations of heterogeneities in the adhesion energies measured between pathogenic and non-pathogenic Listeria species and silicon nitride as they correlate to virulence and adherence. Biofouling 2011, 27:543-559.
55. Plomp M., Leighton T.J., Wheeler K.E., Hill H.D., Malkin A.J. In vitro high resolution structural dynamics of single germinating bacterial spores. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:9644-9964.
56. Radmacher M., Cleveland J., Fritz M., Hansma H., Hansma P. Mapping interaction forces with the atomic-force microscope. Biophysical Journal 1994, 66:2159-2165.
57. Razatos A., Ong Y., Sharma M., Georgiou G. Molecular determinants of bacterial adhesion monitored by atomic force microscopy. Proceedings of the National Academy of Sciences of the United States of America 1998, 95:11059-11106.
58. Rief M., Oesterhelt F., Heymann B., Gaub H.E. Single molecule force spectroscopy on polysaccharides by atomic force microscopy. Science 1997, 275:1295-1297.
59. Riener C.K., Stroh C.M., Ebner A., Klampfl C., Gall A.A., Romanin C., Lyubchenko Y.L., Hinterdorfer P., Gruber H.J. Simple test system for single molecule recognition force microscopy. Analytica Chimica Acta 2003, 479:59-75.
60. Schaer-Zammaretti P., Ubbink J. Imaging of lactic acid bacteria with AFM - elasticity and adhesion maps and their relationship to biological and structural data. Ultramicroscopy 2003, 97:199-208.
61. Shibata M., Yamashita H., Uchihashi T., Kandori H., Ando T. High-speed atomic force microscopy shows dynamic molecular processes in photoactivated bacteriorhodopsin. Nature Nanotechnology 2010, 5:208-212.
62. Takano H., Kenseth J., Wong S., O'Brien J., Porter M. Chemical and biochemical analysis using scanning force microscopy. Chemical Reviews 1999, 99:2845-2890.
63. Touhami A., Jericho M., Boyd J., Beveridge T. Nanoscale characterization and determination of adhesion forces of Pseudomonas aeruginosa Pili by using atomic force microscopy. Journal of Bacteriology 2006, 188:370-377.
64. Turner R.D., Thomson N.H., Kirkham J., Devine D. Improvement of the pore trapping method to immobilize vital coccoid bacteria for high-resolution AFM: a study of Staphylococcus aureus. Journal of Microscopy 2010, 238:102-110.
65. Vakarelski I., Higashitani K. Single-nanoparticle-terminated tips for scanning probe microscopy. Langmuir 2006, 22:2931-2934.
66. van der Mei H., Busscher H., Bos R., de Vries J., Boonaert C., Dufrene Y. Direct probing by atomic force microscopy of the cell surface softness of a fibrillated and nonfibrillated oral streptococcal strain. Biophysical Journal 2000, 78:2668-2674.
67. Velegol S., Logan B. Contributions of bacterial surface polymers, electrostatics, and cell elasticity to the shape of AFM force curves. Langmuir 2002, 18:5256-5262.
68. Verbelen C., Dupres V., Alsteens D., Andre G., Dufrene Y.F. Single-molecule force spectroscopy of microbial cell envelope proteins. Life at the Nanoscale - Atomic Force Microscopy of Live Cells 2011, 317-334. Pan Stanford Publishing Pte. Ltd., Singapore. Y.F. Dufrene (Ed.).
69. Vie V., Giocondi M., Lesniewska E., Finot E., Goudonnet J., Le Grimellec C. Tapping-mode atomic force microscopy on intact cells: optimal adjustment of tapping conditions by using the deflection signal. Ultramicroscopy 2000, 82:279-288.
70. Weisenhorn A., Drake B., Prater C., Gould S., Hansma P., Ohnesorge F., Gaub H. Immobilized proteins in buffer imaged at molecular resolution by atomic force microscopy. Biophysical Journal 1990, 58:1251-1258.
71. Weisenhorn A., Hansma P., Albrecht T., Quate C. Forces in atomic force microscopy in air and water. Applied Physics Letters 1989, 54:2651-2653.
72. Yao X., Walter J., Burke S., Stewart S., Jericho M., Pink D., Beveridge T. Atomic force microscopy and theoretical considerations of surface properties and turgor pressures of bacteria. Colloids and Surfaces B: Biointerfaces 2002, 23:213-230.