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Volumn 6, Issue 9, 2012, Pages 1369-1376

Assessment of genetic diversity in medicinal rices using microsatellite markers

Author keywords

DNA fingerprinting; Genetic diversity; Medicinal rice; Microsatellite marker; Molecular marker.

Indexed keywords


EID: 84865773497     PISSN: 18352693     EISSN: 18352707     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (21)

References (50)
  • 1
    • 0036943205 scopus 로고    scopus 로고
    • Molecular characterization of some India Basmati and other elite rice genotypes using fluorescent-AFLP
    • Aggarwal RK, Shenoy VV, Ramadevi J, Rajkumar R, Singh L (2002) Molecular characterization of some India Basmati and other elite rice genotypes using fluorescent-AFLP. Theor Appl Genet. 105:680-690
    • (2002) Theor Appl Genet , vol.105 , pp. 680-690
    • Aggarwal, R.K.1    Shenoy, V.V.2    Ramadevi, J.3    Rajkumar, R.4    Singh, L.5
  • 5
    • 84865751011 scopus 로고    scopus 로고
    • Molecular markers for characterizing and conserving crop plant germplasm
    • Springer, Netherlands Dordrecht
    • Barcaccia G (2009). Molecular markers for characterizing and conserving crop plant germplasm. In: Jain SM, Brar DS (eds) Molecular Techniques in Crop Improvement, Vol 2: Springer, Netherlands, Dordrecht, 231-254
    • (2009) In: Jain SM, Brar DS (eds) Molecular Techniques in Crop Improvement , vol.2 , pp. 231-254
    • Barcaccia, G.1
  • 6
    • 0036933585 scopus 로고    scopus 로고
    • Fluorescentlabeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativa L)
    • Blair MW, Hedetale V, McCouch SR (2002) Fluorescentlabeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativa L.). Theor Appl Genet. 105:449-457
    • (2002) Theor Appl Genet , vol.105 , pp. 449-457
    • Blair, M.W.1    Hedetale, V.2    McCouch, S.R.3
  • 7
    • 0034090835 scopus 로고    scopus 로고
    • Diversity of microsatellites derived from genomic libraries and Gene Bank sequences in rice (Oryza sativa L)
    • Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, McCouch SR (2000) Diversity of microsatellites derived from genomic libraries and Gene Bank sequences in rice (Oryza sativa L.). Theor Appl Genet. 100:713-722
    • (2000) Theor Appl Genet , vol.100 , pp. 713-722
    • Cho, Y.G.1    Ishii, T.2    Temnykh, S.3    Chen, X.4    Lipovich, L.5    McCouch, S.R.6
  • 9
    • 0034467118 scopus 로고    scopus 로고
    • Use of three different marker systems to estimate genetic diversity of Indian elite rice varieties
    • Davierwala AP, Chowdari KV, Kumar S, Reddy APK, Ranjekar PK, Gupta VS (2000) Use of three different marker systems to estimate genetic diversity of Indian elite rice varieties. Genetics. 108:269-284
    • (2000) Genetics , vol.108 , pp. 269-284
    • Davierwala, A.P.1    Chowdari, K.V.2    Kumar, S.3    Reddy, A.P.K.4    Ranjekar, P.K.5    Gupta, V.S.6
  • 10
    • 0032765550 scopus 로고    scopus 로고
    • The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza saitva L)
    • Garland SH, Lewin L, Abedinia M, Henry R, Blackeney A (1999) The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza saitva L.). Euphytica. 108:53-63
    • (1999) Euphytica , vol.108 , pp. 53-63
    • Garland, S.H.1    Lewin, L.2    Abedinia, M.3    Henry, R.4    Blackeney, A.5
  • 11
    • 34548248218 scopus 로고    scopus 로고
    • Nutrient composition and physicochemical properties of Indian medicinal rice - Njavara
    • Deepa G, Singh V, Naidu KA (2008) Nutrient composition and physicochemical properties of Indian medicinal rice - Njavara. Food Chem. 106:165-171
    • (2008) Food Chem , vol.106 , pp. 165-171
    • Deepa, G.1    Singh, V.2    Naidu, K.A.3
  • 12
    • 34247276055 scopus 로고    scopus 로고
    • Assessment of the genetic diversity in Argentine rice cultivars with SSR markers
    • Giarrocco LE, Marassi MA, Salerno GL (2003) Assessment of the genetic diversity in Argentine rice cultivars with SSR markers. Crop Sci. 47:853-858
    • (2003) Crop Sci , vol.47 , pp. 853-858
    • Giarrocco, L.E.1    Marassi, M.A.2    Salerno, G.L.3
  • 13
    • 79961133782 scopus 로고    scopus 로고
    • Microsatellite markers: An important fingerprinting tool for characterization of crop plants
    • Ijaz S (2011). Microsatellite markers: An important fingerprinting tool for characterization of crop plants. Afr J Biotechnol. 10(40):7723-7726
    • (2011) Afr J Biotechnol , vol.10 , Issue.40 , pp. 7723-7726
    • Ijaz, S.1
  • 14
    • 0033921668 scopus 로고    scopus 로고
    • Microsatellites and microsynteny in chloroplast genomes of Oryza and eight other Gramineae species
    • Ishii T, McCouch SR (2000) Microsatellites and microsynteny in chloroplast genomes of Oryza and eight other Gramineae species. Theor Appl Genet. 100:1257-1266
    • (2000) Theor Appl Genet , vol.100 , pp. 1257-1266
    • Ishii, T.1    McCouch, S.R.2
  • 15
    • 5344227605 scopus 로고    scopus 로고
    • Genetic analysis of Indian aromatic and quality rice (Oryza sativa) germplasm using panels of fluorescently-labeled microsatellite markers
    • Jain S, Jain RK, McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet. 109:965-977
    • (2004) Theor Appl Genet , vol.109 , pp. 965-977
    • Jain, S.1    Jain, R.K.2    McCouch, S.R.3
  • 16
    • 33845477488 scopus 로고    scopus 로고
    • SSR analysis of chromosome 8 regions associated with aroma and cooked kernel elongation in Basmati rice
    • Jain N, Jain S, Saini N, Jain RK (2006) SSR analysis of chromosome 8 regions associated with aroma and cooked kernel elongation in Basmati rice. Euphytica. 152:259-273
    • (2006) Euphytica , vol.152 , pp. 259-273
    • Jain, N.1    Jain, S.2    Saini, N.3    Jain, R.K.4
  • 17
    • 34247205885 scopus 로고    scopus 로고
    • Genetic relatedness of Portuguese rice accessions from diverse origin as assessed by microsatellite markers
    • Jayamani P, Negrao S, Martins M, Macas B, Oliveira MM (2007) Genetic relatedness of Portuguese rice accessions from diverse origin as assessed by microsatellite markers. Crop Sci. 47:879 - 886
    • (2007) Crop Sci , vol.47 , pp. 879-886
    • Jayamani, P.1    Negrao, S.2    Martins, M.3    Macas, B.4    Oliveira, M.M.5
  • 18
    • 84865779863 scopus 로고    scopus 로고
    • Comparative genetic analysis of lowland rice cultivars of India using microsatellite markers
    • Joshi RK, Subudhi E, Kar B, Nayak S (2010) Comparative genetic analysis of lowland rice cultivars of India using microsatellite markers. Biores Bull. 4: 213-223
    • (2010) Biores Bull , vol.4 , pp. 213-223
    • Joshi, R.K.1    Subudhi, E.2    Kar, B.3    Nayak, S.4
  • 19
    • 33750997618 scopus 로고    scopus 로고
    • Oryza nivara Sharma et Shastry, the progenitor of O. sativa L. subspecies indica harbours rich genetic diversity as measured by SSR markers
    • Juneja S, Das A, Joshi SV, Sharma S, Vikal Y, Patra BC, Bharaj TS, Sidhu JS, Singh K (2006) Oryza nivara Sharma et Shastry, the progenitor of O. sativa L. subspecies indica harbours rich genetic diversity as measured by SSR markers. Curr Sci. 91:1079-1085
    • (2006) Curr Sci , vol.91 , pp. 1079-1085
    • Juneja, S.1    Das, A.2    Joshi, S.V.3    Sharma, S.4    Vikal, Y.5    Patra, B.C.6    Bharaj, T.S.7    Sidhu, J.S.8    Singh, K.9
  • 20
    • 80053034180 scopus 로고    scopus 로고
    • Phylogenetic relationships among various groups of rice (Oryza sativa L) as revealed by microsatellite and transposable element-based marker analysis
    • Kaushik A, Jain S, McCouch SR, Jain RK (2011) Phylogenetic relationships among various groups of rice (Oryza sativa L.) as revealed by microsatellite and transposable element-based marker analysis. Indian J Genet Pl Br 71:139-150
    • (2011) Indian J Genet Pl Br , vol.71 , pp. 139-150
    • Kaushik, A.1    Jain, S.2    McCouch, S.R.3    Jain, R.K.4
  • 23
    • 11944272751 scopus 로고
    • Statistical significance of matrix correlation coefficient for comparing independent phylogenetic trees
    • Lapointe FJ, Legendre P (1992) Statistical significance of matrix correlation coefficient for comparing independent phylogenetic trees. Syst Biol. 41: 378-384
    • (1992) Syst Biol , vol.41 , pp. 378-384
    • Lapointe, F.J.1    Legendre, P.2
  • 25
    • 8444233467 scopus 로고    scopus 로고
    • Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis
    • Lu H, Redus MA, Coburn JR, Rutger JN, McCouch SR, Tai TH (2005) Population structure and breeding patterns of 145 US rice cultivars based on SSR marker analysis. Crop Sci. 45:. 66-76
    • (2005) Crop Sci , vol.45 , pp. 66-76
    • Lu, H.1    Redus, M.A.2    Coburn, J.R.3    Rutger, J.N.4    McCouch, S.R.5    Tai, T.H.6
  • 26
    • 79959809099 scopus 로고    scopus 로고
    • Variations in production pathway for qualitative and quantitative characteristics in medicinal rice 'Njavara'
    • Menon MV, Potty NN (1998) Variations in production pathway for qualitative and quantitative characteristics in medicinal rice 'Njavara'. Oryza. 35: 208-210
    • (1998) Oryza , vol.35 , pp. 208-210
    • Menon, M.V.1    Potty, N.N.2
  • 27
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 28
    • 0037197888 scopus 로고    scopus 로고
    • Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers
    • Nagaraju J, Kathirvel M, Ramesh Kumar R, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc Natl Acad Sci USA. 99:5836-5841
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5836-5841
    • Nagaraju, J.1    Kathirvel, M.2    Ramesh Kumar, R.3    Siddiq, E.A.4    Hasnain, S.E.5
  • 29
    • 3442878211 scopus 로고    scopus 로고
    • Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers
    • Nandakumar N, Singh AK, Sharma RK, Mohapatra T, Prabhu KV, Zaman FU (2004) Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers. Euphytica. 136:257-264
    • (2004) Euphytica , vol.136 , pp. 257-264
    • Nandakumar, N.1    Singh, A.K.2    Sharma, R.K.3    Mohapatra, T.4    Prabhu, K.V.5    Zaman, F.U.6
  • 30
    • 0036302260 scopus 로고    scopus 로고
    • Evaluation of genetic diversity in rice subspecies using microsatellite markers
    • Ni J, Colowit PM, Mackill DJ (2002) Evaluation of genetic diversity in rice subspecies using microsatellite markers. Crop Sci. 42:601-607
    • (2002) Crop Sci , vol.42 , pp. 601-607
    • Ni, J.1    Colowit, P.M.2    Mackill, D.J.3
  • 31
    • 0005814023 scopus 로고
    • Mathematical models for studying genetic variation in terms of restriction end nucleases
    • Nie M, Li WH (1979) Mathematical models for studying genetic variation in terms of restriction end nucleases. Proc Natl Acad Sci USA. 76:5269-5273
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 5269-5273
    • Nie, M.1    Li, W.H.2
  • 32
    • 0031154020 scopus 로고    scopus 로고
    • Comparative evaluation of within-cultivar variation of rice (Oryza sativa L) using microsatellite and RFLP markers
    • Olufowote JO, Xu Y, Chen X, Park WD, Beachell HM, Dilday RH, Goto M, McCouch SR (1997) Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome. 40:370-378
    • (1997) Genome , vol.40 , pp. 370-378
    • Olufowote, J.O.1    Xu, Y.2    Chen, X.3    Park, W.D.4    Beachell, H.M.5    Dilday, R.H.6    Goto, M.7    McCouch, S.R.8
  • 34
    • 36849070718 scopus 로고    scopus 로고
    • Genetic diversity among cultivars, landraces and wild relatives of rice as revealed by microsatellite markers
    • Ram SG, Thiruvengadam V, Vinod KK (2007) Genetic diversity among cultivars, landraces and wild relatives of rice as revealed by microsatellite markers. J Appl Genet. 48:337-345
    • (2007) J Appl Genet , vol.48 , pp. 337-345
    • Ram, S.G.1    Thiruvengadam, V.2    Vinod, K.K.3
  • 35
    • 0346038786 scopus 로고    scopus 로고
    • A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers
    • Ren F, Lu BR, Li S, Huang J, Zhu Y (2003) A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor Appl Genet. 108:113-120
    • (2003) Theor Appl Genet , vol.108 , pp. 113-120
    • Ren, F.1    Lu, B.R.2    Li, S.3    Huang, J.4    Zhu, Y.5
  • 37
    • 16444366318 scopus 로고    scopus 로고
    • Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP
    • Saini N, Jain N, Jain S, Jain RK (2004) Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers. Euphytica. 140:133-146
    • (2004) ISSR and SSR markers. Euphytica. , vol.140 , pp. 133-146
    • Saini, N.1    Jain, N.2    Jain, S.3    Jain, R.K.4
  • 38
    • 0442298584 scopus 로고    scopus 로고
    • Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice
    • Singh RK, Sharma RK, Singh AK, Singh VP, Singh NK, Tiwari SP, Mohapatra T (2004) Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice. Euphytica. 135:135-143
    • (2004) Euphytica , vol.135 , pp. 135-143
    • Singh, R.K.1    Sharma, R.K.2    Singh, A.K.3    Singh, V.P.4    Singh, N.K.5    Tiwari, S.P.6    Mohapatra, T.7
  • 40
    • 48349123905 scopus 로고    scopus 로고
    • Collecting and morphological evaluation of 'Njavara', traditional medicinal rice (Oryza sativa L.) in Kerala
    • Sreejayan, Kumar VR, Thomas G (2003) Collecting and morphological evaluation of 'Njavara', traditional medicinal rice (Oryza sativa L.) in Kerala, India. Plant Genet Resour Newslet. 135:12-17
    • (2003) India. Plant Genet Resour Newslet. , vol.135 , pp. 12-17
    • Sreejayan1    Kumar, V.R.2    Thomas, G.3
  • 43
    • 0032944974 scopus 로고    scopus 로고
    • Optimization of molecular markers for varietal identification in Vitis vinifera L
    • Tessier C, David J, This P, Boursiquot JM, Charrier A (1999) Optimization of molecular markers for varietal identification in Vitis vinifera L. Theor Appl Genet. 98:171-177
    • (1999) Theor Appl Genet , vol.98 , pp. 171-177
    • Tessier, C.1    David, J.2    This, P.3    Boursiquot, J.M.4    Charrier, A.5
  • 44
    • 78650159322 scopus 로고    scopus 로고
    • Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.), collected in East Kalimantan on the Island of Borneo
    • Thomson MJ, Polato NR, Prasetiyono J, Trijatmiko KR, Silitonga TS, McCouch SR (2009) Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.), collected in East Kalimantan on the Island of Borneo. Rice. 2: 80-92
    • (2009) Rice , vol.2 , pp. 80-92
    • Thomson, M.J.1    Polato, N.R.2    Prasetiyono, J.3    Trijatmiko, K.R.4    Silitonga, T.S.5    McCouch, S.R.6
  • 46
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: features and applications
    • Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 23:48-55
    • (2005) Trends Biotechnol , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3


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