The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza sativa L.)

Euphytica

Volumn 108, Issue 1, 1999, Pages 53-63

  Garland, S H ^a   Lewin, L ^b   Abedinia, M ^a   Henry, R ^a   Blakeney, A ^c  

^a SOUTHERN CROSS UNIVERSITY   (Australia)

^b NSW DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^c BRI Australia Ltd   (Australia)

Author keywords

Microsatellite; Oryza sativa; Polymorphism; Rice

Indexed keywords

AUSTRALIA; CULTIVAR IDENTIFICATION; CULTIVAR; DNA AMPLIFICATION; DNA FINGERPRINTING; DNA POLYMORPHISM; GENETIC MARKER; MICROSATELLITE DNA;

ORYZA SATIVA;

EID: 0032765550     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003688612179     Document Type: Article

References (17)

1. Akagi, H., Y. Yokozeki, A. Inagaki & T. Fujimura, 1996. Microsatellite DNA markers for rice chromosomes. Theor Appl Genet 93: 1071-1077.
2. Akagi, H., Y. Yokozeki, A. Inagaki & T. Fujimura, 1997. Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci. Theor Appl Genet 94: 61-67.
3. Chen, X., S. Temnykh, Y Xu, Y.G. Cho & S.R. McCouch, 1997. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet 95: 553-567.
4. Ko, H.L., D.C. Cowan, R.J. Henry, G.C. Graham, A.B. Blakeney & L.G. Lewin, 1994. Random amplified polymorphic DNA analysis of Australian rice (Oryza sativa L.) varieties.Euphytica 80: 179-189.
5. Mackill, D.J., Z. Zhang, E.D. Redona & P.M. Colowit, 1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39: 969-977.
6. McCouch, S.R., X. Chen, O. Panaud, S. Temnykh, Y. Xu, YG. Cho, N. Huang, T. Ishii & M. Blair, 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Molec Biol 35: 89-99.
7. McCouch, S.R., Z.H. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman & S.D. Tanksley, 1988. Molecular mapping of rice chromosomes. Theor Appl Genet 76: 815-829.
8. Nei, M., 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
9. Olufowote, J.O., Y. Xu, X. Chen, W.O. Park, H.M. Beachell, R.H. Dilday, M. Goto & S.R. McCouch, 1997. Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome 40: 370-378.
10. Ohta, T. & M. Kimura, 1973. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finate population. Genet Res 22: 201-204.
11. Panaud, O., X. Chen & S.R. McCouch, 1996. Development of microsatellite markers and characterisation of simple sequence length polymorphism (SSLP) in rice (Oryzasativa L.). Mol Gen Genet 252: 597-607.
12. Virk, P.S., B.V. Ford-Lloyd, M.T. Jackson & H.J. Newbury, 1995. Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179.
13. Wang, Z.Y., G. Second & S.D. Tanksley, 1992. Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor Appl Genet 83: 565-581.
14. Wang, Z.Y. & S.D. Tanksley, 1989. Restriction fragment length polymorphism in Oryza sativa L. Genome 32: 1113-1118.
15. Weining, S. & R.J. Henry, 1995. Molecular analysis of the DNA polymorphism of wild barley (Hordeum spontaneum) gerplasm using the polymerase chain reaction. Genetic Resources and Crop Evolution 42: 273-281.
16. Wu, K-S. & S.D. Tanksley, 1993. Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol GenGenet 241: 225-235.
17. Yang, G.P., M.A. Saghai Maroof, C.G. Xu, Qifa Zhang & R.M. Biyashev, 1994. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 245: 187-194.