Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers

Euphytica

Volumn 136, Issue 3, 2004, Pages 257-264

  Nandakumar, N ^a   Singh, A K ^a   Sharma, R K ^a,b   Mohapatra, T ^b   Prabhu, K V ^a   Zaman, F U ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^b NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

Author keywords

Fingerprinting; Genetic purity; Grow out test; Restorer gene; Rice hybrids; STMS

Indexed keywords

EMBRYOPHYTA; PUSA; TRANSPOSONS;

EID: 3442878211     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EUPH.0000032706.92360.c6     Document Type: Article

References (26)

1. Bredemeijer, G.M.M., R.J. Cook, M.W. Ganal, R. Peeters, P. Issac, Y. Noordijk, S. Rendell, J. Jackson, M.S. Röder, K. Wendehake, M. Dijcks, M. Amelaine, V. Wickaert, L. Bertrand & B. Vosman, 2002. Construction and testing of microsatellite database containing more than 500 tomato varieties. Theor Appl Genet 105: 1019-1026.
2. Chen, S., C.G. Xu, S.H. Lin & Q. Zhang, 2001. Improving BB resistance of "6078", an elite R line of hybrid rice by molecular marker assisted selection. Plant Breeding 120: 133-137.
3. Chen, X., S. Temnykh, Y. Xu, Y.G. Cho & S.R. McCouch, 1997. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet 95: 553-567.
4. Cho, Y.G., T. Ishii, S. Temnykh, X. Chen, L. Lipovich, S.R. McCouch, W.D. Park, N. Ayres & S. Cartinhour, 2000. Diversity of microsatellites derived from genomic libraries and Gen-Bank sequences in rice (Oryza sativa L.). Theor Appl Genet 100: 713-722.
5. Doyle, J.J. & J.L. Doyle, 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-14.
6. Garland, S.H., L. Lewin, M. Abedinia, R. Henry & A. Blakeney, 1999. The use of microsatellite polymorphisms for the identification of Australian breeding lines of rice (Oryza sativa L.). Euphytica 108: 53-63.
7. 1 hybrids in sunflower (Helianthus annuus L.). Theor Appl Genet 106: 599-606.
8. Janeja, H.S., S.S. Banga & M. Lakshmikumaran, 2003. Identification of AFLP markers linked to fertility restorer genes for tournefortii cytoplasmic male-sterility system in Brassica napus. Theor Appl Genet 107: 148-154.
9. Jena, K.K. & S.K. Pandey, 1999. DNA markers for purification of A and B lines for hybrid rice improvement. Hybrid Rice News Lett 2(1): 13-14.
10. Jones, J.W., 1926. Hybrid vigor in rice. J Am Soc Agron 18: 424-428.
11. Liu, L., W. Guo, X. Zhu & T. Zhang, 2003. Inheritance and fine mapping of fertility restoration for cytoplasmic male sterility in Gossypium hirsutum L. Theor Appl Genet 106: 461-469.
12. McCouch, S.R., X. Chen, O. Panaud, S. Temnykh, Y. Xu, Y.G. Cho, N. Huang, T. Ishii & M. Blair, 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Molec Biol 35: 89-99.
13. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing, Q. Zhang, I. Kono, M. Yano, R. Fjellstrom, G. DeClerck, D. Schneider, S. Cartinhour, D. Ware & L. Stein, 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9: 199-207.
14. Mishra, G.P., R.K. Singh, T. Mohapatra, A.K. Singh, K.V. Prabhu, F.U. Zaman & R.K. Sharma, 2003. Molecular mapping of gene for fertility restoration of wild abortive (WA) cytoplasmic male sterility using a basmati rice restorer line. J Plant Biochem Biotech 12: 37-42.
15. Röder, M.S., K. Wendehake, V. Korzun, G.M.M. Bredemeijer, D. Laborie, L. Bertrand, P. Issac, S. Rendell, J. Jackson, R.J. Cook, B. Vosman & M.W. Ganal, 2002. Construction and analysis of a microsatellite-based database of European wheat varieties. Theor Appl Genet 106: 67-73.
16. Rohlf, F.J., 1998. NTSYS-PC Numerical Taxonomy and Multivariate Analysis System, version 2.0. Exeter Software, Setauket, New York.
17. Singh, R.K., R.K. Sharma, A.K. Singh, V.P. Singh, N.K. Singh, S.P. Tiwari & T. Mohapatra, 2004. Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice. Euphytica 135(2): 135-143.
18. Temnykh, S., W.D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii & S.R. McCouch, 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor Appl Genet 100: 697-712.
19. UPOV-BMT, 2002. BMT/36/10 Progress Report of the 36th Session of the Technical Committee, the technical working parties and working group on biochemical and molecular techniques and DNA-profiling in particular, Geneva.
20. Virmani, S.S., 1999. Exploitation of heterosis for shifting the yield frontier in rice. In: J.G. Coors & S. Pandey (Eds.), The Genetics and Exploitation of Heterosis in Crops, pp. 423-438. CIMMYT, ASA, CSSA, Madison, WI.
21. Wang, G., S. Castiglione, J. Zhang, R. Fu, J. Ma, W. Li, Y. Sun & F. Sala, 1994. Hybrid rice (Oryza sativa L): Identification and parentage determination by RAPD fingerprinting. Plant Cell Rep 14: 112-115.
22. Wen, L., H.V. Tang, W. Chen, R. Chang, D.R. Pring, P.E. Klein, K.L. Childs & R.R. Klein, 2002. Development and mapping of AFLP markers linked to the sorghum fertility restorer gene rf4. Theor Appl Genet 104: 577-585.
23. Wu, K.S. & S.D. Tanksley, 1993. Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241: 225-235.
24. Xu, W., S.S. Virmani, J.E. Hernandez, L.S. Sebastian E.D. Redona & Z. Li, 2002. Genetic diversity in the parental lines and heterosis of the tropical rice hybrids. Euphytica 127: 139-148.
25. Yashitola, J., T. Thirumurugan, R.M. Sundaram, M.K. Naseerullah, M.S. Ramesha, N.P. Sarma & R.V. Stone, 2002. Assessment of purity of rice hybrids using microsatellite and STS markers. Crop Sci 42: 1369-1373.
26. Zhou, P.H., Y.F. Tan, Y.Q. He, C.G. Xu & Q. Zhang, 2003. Simultaneous improvement for four quality traits of Zhenshan 97, by molecular marker assisted selection. Theor Appl Genet 106: 326-331.