Selective derivatization of cytosine and methylcytosine moieties with 2-bromoacetophenone for submicrogram DNA methylation analysis by reversed phase HPLC with spectrofluorimetric detection

Analytical Chemistry

Volumn 83, Issue 20, 2011, Pages 7999-8005

  Wrobel, Kazimierz ^a   Lopez Torres, Adolfo ^a   Yanez Barrientos, Eunice ^a   Wrobel, Katarzyna ^a  

^a UNIVERSITY OF GUANAJUATO   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL INSTRUMENTATION; BIOLOGICAL STUDIES; CYTIDINE; DERIVATIZATIONS; DETECTION LIMITS; DNA METHYLATION; DNA METHYLATION ANALYSIS; DNA METHYLATION PATTERN; ENVIRONMENTAL FACTORS; HUMAN BLOODS; LIVING ORGANISMS; METHYLCYTOSINE; POTENTIAL EFFECTS; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; REVERSED PHASE HPLC; SPECTROFLUORIMETRIC;

ALKYLATION; BIOLOGY; DNA; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; PERSONNEL TRAINING; RNA;

METHYLATION;

5 METHYLCYTIDINE; 5 METHYLCYTOSINE; 5 METHYLDEOXYCYTIDINE; 5-METHYLCYTIDINE; 5-METHYLDEOXYCYTIDINE; ACETOPHENONE DERIVATIVE; CYTIDINE; CYTOSINE; DEOXYCYTIDINE; DRUG DERIVATIVE; PHENACYL BROMIDE;

ANIMAL; ANNELID WORM; ARTICLE; CHEMISTRY; DNA METHYLATION; FLUOROMETRY; GENETICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; LEPIDIUM SATIVUM; REVERSED PHASE LIQUID CHROMATOGRAPHY; SALMON;

5-METHYLCYTOSINE; ACETOPHENONES; ANIMALS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, REVERSE-PHASE; CYTIDINE; CYTOSINE; DEOXYCYTIDINE; DNA METHYLATION; FLUOROMETRY; HUMANS; LEPIDIUM SATIVUM; OLIGOCHAETA; SALMON;

EID: 80054711212     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac2020799     Document Type: Article

References (44)

1. Berger, S. L.; Kouzarides, T.; Shiekhattar, R.; Shilatifard, A. Genes Dev. 2009, 23, 781-783
2. Fraga, M. F.; Esteller, M. BioTechniques 2002, 33, 632-649
3. Dahl, C.; Guldberg, P. Biogerontology 2003, 4, 233-250
4. Vucic, E. A.; Brown, C. J.; Lam, W. L. Pharmacogenomics 2008, 9, 215-234
5. Ho, S. M.; Tang, W. Y. Reprod. Toxicol. 2007, 23, 267-282
6. Su, Z.; Han, L.; Zhao, Z. Epigenetics 2011, 6, 134-140
7. Zhang, M.; Kimatu, J. N.; Xu, K.; Liu, B. J. Genet. Genomics 2010, 37, 1-12
8. Compare, D.; Rocco, A.; Liguori, E.; D'Armiento, F. P.; Persico, G.; Masone, S.; Coppola-Bottazzi, E.; Suriani, R.; Romano, M.; Nardone, G. J. Clin. Pathol. 2011, 64, 677-682
9. Terry, M. B.; Delgado-Cruzata, L.; Vin-Raviv, N.; Wu, H. C.; Santella, R. M. Epigenetics 2011, 6, 828-837
10. Guerrero-Preston, R.; Goldman, L. R.; Brebi-Mieville, P.; Ili-Gangas, C.; Lebron, C.; Witter, F. R.; Apelberg, B. J.; Hernandez-Roystacher, M.; Jaffe, A.; Halden, R. U.; Sidransky, D. Epigenetics 2010, 5, 539-546
11. Kim, M.; Long, T. I.; Arakawa, K.; Wang, R.; Yu, M. C.; Laird, P. W. PLoS One 2010, 5, e9692
12. Guerrero-Preston, R.; Santella, R. M.; Blanco, A.; Desai, M.; Berdasco, M.; Fraga, M. Epigenetics 2007, 2, 223-226
13. Moore, L. E.; Pfeiffer, R. M.; Poscablo, C.; Real, F. X.; Kogevinas, M.; Silverman, D.; Garcia-Closas, R.; Chanock, S.; Tardon, A.; Serra, C.; Carrato, A.; Dosemeci, M.; Garcia-Closas, M.; Esteller, M.; Fraga, M.; Rothman, N.; Malats, N. Lancet Oncol. 2008, 9, 359-366
14. Wright, R. O.; Schwartz, J.; Wright, R. J.; Bollati, V.; Tarantini, L.; Park, S. K.; Hu, H.; Sparrow, D.; Vokonas, P.; Baccarelli, A. Environ. Health Perspect. 2010, 118, 790-795
15. Alcazar Magana, A.; Wrobel, K.; Alvarado Caudillo, Y.; Zaina, S.; Lund, G.; Wrobel, K. Anal. Biochem. 2008, 374, 378-385
16. Song, L.; Smitha, R.; Kazim, J. L.; Karpf, A. R. Anal. Chem. 2005, 77, 504-510
17. Li, M.; Hu, S. L.; Shen, Z. J.; He, X. D.; Tao, S. N.; Dong, L.; Zhu, Y. Y. Anal. Biochem. 2009, 387, 71-75
18. Sotgia, S.; Carru, C.; Franconi, F.; Battista Fiori, P.; Mancae, S.; Pettinato, S.; Magliona, S.; Ginanneschi, R.; Deiana, L.; Zinellu, A. J. Chromatogr., A 2008, 1185, 145-150
19. Fraga, M. F.; Uriol, E.; Borja Diego, L.; Berdasco, M.; Esteller, M.; Cañal, M. J.; Rodriguez, R. Electrophoresis 2002, 23, 1677-1681
20. Zinellu, A.; Sotgia, S.; De Murtas, V.; Cossu-Rocca, P.; De Miglio, M. R.; Muroni, M. R.; Mura, A.; Uras, M. G.; Contini, M.; Deiana, L.; Carru, C. Anal. Bioanal. Chem. 2011, 399, 1181-1186
21. Berdasco, M.; Fraga, M. F.; Esteller, M. Methods Mol. Biol. 2009, 507, 23-34
22. Cornelius, M. G.; Wörth, C. G. C. T.; Kliem, H. C.; Wiessler, M.; Schmeiser, H. H. Electrophoresis 2005, 26, 2591-2598
23. Hassel, M.; Cornelius, M. G.; vom Brocke, J.; Schmeiser, H. H. Electrophoresis 2010, 31, 299-302
24. Schiewek, R.; Wirtz, M.; Thiemann, M.; Plitt, K.; Vogt, G.; Schmitz, O. J. J. Chromatogr., B 2007, 850, 548-552
25. Kouidou, S.; Kovatsi, L.; Iannou, A. Curr. Org. Chem. 2010, 14, 2268-2281
26. Yang, I.; Fortin, M. C.; Richardson, J. R.; Buckley, B. Anal. Biochem. 2011, 409, 138-143
27. Rozhon, W.; Baubec, T.; Mayerhofer, J.; Mittelsten Scheid, O.; Jonak, C. Anal. Biochem. 2008, 375, 354-360
28. Johnston, J. W.; Harding, K.; Bremmer, D. H.; Souch, G.; Green, J.; Lynch, P. T.; Grout, B.; Benson, E. E. Plant Physiol. Biochem. 2005, 43, 844-853
29. Sandhu, J.; Kaur, B.; Armstrong, C.; Talbot, C. J.; Steward, W. P.; Farmer, P. B.; Singh, R. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2009, 877, 1957-1961
30. Wang, X.; Suo, Y.; Yin, R.; Shen, H.; Wang, H. J. Chromatogr., B 2011, 879, 1647-1652
31. Ramsahoye, B. H. Methods 2002, 27, 156-161
32. Wrobel, K.; Landero Figueroa, J. A.; Zaina, S.; Lund, G.; Wrobel, K. J. Chromatogr., B 2010, 878, 609-614
33. Armstrong, K. M.; Bermingham, E. N.; Bassett, S. A.; Treloar, B. P.; Roy, N. C.; Barnett, M. P. Biotechnol. J. 2011, 6, 113-117
34. Zhang, J. J.; Zhang, L.; Zhou, K.; Ye, X.; Liu, C.; Zhang, L.; Kang, J.; Cai, C. Anal. Biochem. 2011, 413, 164-170
35. Eisenberg, E. J.; Cundy, K. C. J. Chromatogr., B 1996, 679, 119-127
36. Shibata, T.; Kawasaki, S.; Fujita, J.; Kabashima, T.; Kai, M. Anal. Chim. Acta 2010, 674, 234-238
37. Yanez Barrientos, E.; Rodriguez Flores, C.; Wrobel, K.; Wrobel, K. J. Mex. Chem. Soc., in press
38. Maldonado Santoyo, M.; Rodriguez Flores, C.; Lopez Torres, A.; Wrobel, K.; Wrobel, K. Environ. Pollut. 2011, 159, 2387-2392
39. Aljanabi, S. M.; Martinez, I. Nucleic Acids Res. 1997, 25, 4692-4693
40. Mitra, S. E. Sample Preparation Techniques in Analytical Chemistry; Wiley-Interscience: Hoboken, NJ, 2003.
41. Rossella, F.; Polledri, E.; Bollati, V.; Baccarelli, A.; Fustinoni, S. Rapid Commun. Mass Spectrom. 2009, 23, 2637-2646
42. Schaefer, M.; Pollex, T.; Hanna, K.; Lyko, F. Nucleic Acids Res. 2009, 37, e12/11-e12/10
43. Chen, T.; Li, E. Curr. Top. Dev. Biol. 2004, 60, 55-89
44. Filek, M.; Keskinen, R.; Hartikainen, H.; Szarejko, I.; Janiak, A.; Miszalski, Z.; Golda, A. J. Plant Physiol. 2008, 165, 833-844