-
1
-
-
0037209758
-
The nitrile-degrading enzymes: Current status and future prospects
-
Banerjee, A., Sharma, R., and Banerjee, U. C. (2002) The nitrile-degrading enzymes: current status and future prospects. Appl. Microbiol. Biotechnol. 60, 33-44
-
(2002)
Appl. Microbiol. Biotechnol.
, vol.60
, pp. 33-44
-
-
Banerjee, A.1
Sharma, R.2
Banerjee, U.C.3
-
2
-
-
33645550470
-
Azotobacter vinelandii vanadium nitrogenase: Formaldehyde is a product of catalyzed HCN reduction, and excess ammonia arises directly from catalyzed azide reduction
-
Fisher, K., Dilworth, M. J., and Newton, W. E. (2006) Azotobacter vinelandii vanadium nitrogenase: formaldehyde is a product of catalyzed HCN reduction, and excess ammonia arises directly from catalyzed azide reduction. Biochemistry 45, 4190-4198
-
(2006)
Biochemistry
, vol.45
, pp. 4190-4198
-
-
Fisher, K.1
Dilworth, M.J.2
Newton, W.E.3
-
4
-
-
1342325436
-
Identification of four genes necessary for biosynthesis of the modified nucleoside queuosine
-
Reader, J. S., Metzgar, D., Schimmel, P., and de Crécy-Lagard, V. (2004) Identification of four genes necessary for biosynthesis of the modified nucleoside queuosine. J. Biol. Chem. 279, 6280-6285
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6280-6285
-
-
Reader, J.S.1
Metzgar, D.2
Schimmel, P.3
De Crécy-Lagard, V.4
-
5
-
-
15444381025
-
From cyclohydrolase to oxidoreductase: Discovery of nitrile reductase activity in a common fold
-
Van Lanen, S. G., Reader, J. S., Swairjo, M. A., de Crécy-Lagard, V., Lee, B., and Iwata-Reuyl, D. (2005) From cyclohydrolase to oxidoreductase: discovery of nitrile reductase activity in a common fold. Proc. Natl. Acad. Sci. U.S.A. 102, 4264-4269
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 4264-4269
-
-
Van Lanen, S.G.1
Reader, J.S.2
Swairjo, M.A.3
De Crécy-Lagard, V.4
Lee, B.5
Iwata-Reuyl, D.6
-
6
-
-
0018800830
-
Novel mechanism of post-transcriptional modification of tRNA: Insertion of bases of Q precursors into tRNA by a specific tRNA transglycosylase reaction
-
Okada, N., Noguchi, S., Kasai, H., Shindo-Okada, N., Ohgi, T., Goto, T., and Nishimura, S. (1979) Novel mechanism of post-transcriptional modification of tRNA: insertion of bases of Q precursors into tRNA by a specific tRNA transglycosylase reaction. J. Biol. Chem. 254, 3067-3073
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 3067-3073
-
-
Okada, N.1
Noguchi, S.2
Kasai, H.3
Shindo-Okada, N.4
Ohgi, T.5
Goto, T.6
Nishimura, S.7
-
7
-
-
71849095615
-
Enzymatic formation of the 7-deazaguanosine hypermodified nucleosides of tRNA
-
(Grosjean, H., ed) Landes Bioscience, New York
-
Iwata-Reuyl, D., and de Crécy-Lagard, V. (2009) Enzymatic formation of the 7-deazaguanosine hypermodified nucleosides of tRNA. in DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution (Grosjean, H., ed) pp. 379-394, Landes Bioscience, New York
-
(2009)
DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution
, pp. 379-394
-
-
Iwata-Reuyl, D.1
De Crécy-Lagard, V.2
-
8
-
-
0034192571
-
Sequence and structural features of the T-fold, an original tunneling building unit
-
Colloc'h, N., Poupon, A., and Mornon, J. P. (2000) Sequence and structural features of the T-fold, an original tunneling building unit. Proteins 39, 142-154
-
(2000)
Proteins
, vol.39
, pp. 142-154
-
-
Colloc'h, N.1
Poupon, A.2
Mornon, J.P.3
-
9
-
-
7444239015
-
Complexed and ligand-free high resolution structures of urate oxidase (Uox) from Aspergillus flavus: A reassignment of the active-site binding mode
-
Retailleau, P., Colloc'h, N., Vivarès, D., Bonneté, F., Castro, B., El-Hajji, M., Mornon, J. P., Monard, G., and Prangé, T. (2004) Complexed and ligand-free high resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode. Acta Crystallogr. D. Biol. Crystallogr. 60, 453-462
-
(2004)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.60
, pp. 453-462
-
-
Retailleau, P.1
Colloc'h, N.2
Vivarès, D.3
Bonneté, F.4
Castro, B.5
El-Hajji, M.6
Mornon, J.P.7
Monard, G.8
Prangé, T.9
-
10
-
-
70350449245
-
Zinc-independent folate biosynthesis: Genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
-
Sankaran, B., Bonnett, S. A., Shah, K., Gabriel, S., Reddy, R., Schimmel, P., Rodionov, D. A., de Crécy-Lagard, V., Helmann, J. D., Iwata-Reuyl, D., and Swairjo, M. A. (2009) Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB. J. Bacteriol. 191, 6936-6949
-
(2009)
J. Bacteriol.
, vol.191
, pp. 6936-6949
-
-
Sankaran, B.1
Bonnett, S.A.2
Shah, K.3
Gabriel, S.4
Reddy, R.5
Schimmel, P.6
Rodionov, D.A.7
De Crécy-Lagard, V.8
Helmann, J.D.9
Iwata-Reuyl, D.10
Swairjo, M.A.11
-
11
-
-
78049445153
-
High resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism
-
Kim, Y., Zhou, M., Moy, S., Morales, J., Cunningham, M. A., and Joachimiak, A. (2010) High resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism. J. Mol. Biol. 404, 127-137
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 127-137
-
-
Kim, Y.1
Zhou, M.2
Moy, S.3
Morales, J.4
Cunningham, M.A.5
Joachimiak, A.6
-
12
-
-
0025651825
-
Detection of covalent enzyme-substrate complexes of nitrilase by ion-spray mass spectroscopy
-
Stevenson, D. E., Feng, R., and Storer, A. C. (1990) Detection of covalent enzyme-substrate complexes of nitrilase by ion-spray mass spectroscopy. FEBS Lett. 277, 112-114
-
(1990)
FEBS Lett.
, vol.277
, pp. 112-114
-
-
Stevenson, D.E.1
Feng, R.2
Storer, A.C.3
-
13
-
-
33744489086
-
Crystallization and preliminary X-ray characterization of the nitrile reductase QueF: A queuosine-biosynthesis enzyme
-
Swairjo, M. A., Reddy, R. R., Lee, B., Van Lanen, S. G., Brown, S., de Crécy-Lagard, V., Iwata-Reuyl, D., and Schimmel, P. (2005) Crystallization and preliminary X-ray characterization of the nitrile reductase QueF: a queuosine-biosynthesis enzyme. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 61, 945-948
-
(2005)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.61
, pp. 945-948
-
-
Swairjo, M.A.1
Reddy, R.R.2
Lee, B.3
Van Lanen, S.G.4
Brown, S.5
De Crécy-Lagard, V.6
Iwata-Reuyl, D.7
Schimmel, P.8
-
14
-
-
35848965494
-
Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis
-
Lee, B. W., Van Lanen, S. G., and Iwata-Reuyl, D. (2007) Mechanistic studies of Bacillus subtilis QueF, the nitrile oxidoreductase involved in queuosine biosynthesis. Biochemistry 46, 12844-12854
-
(2007)
Biochemistry
, vol.46
, pp. 12844-12854
-
-
Lee, B.W.1
Van Lanen, S.G.2
Iwata-Reuyl, D.3
-
15
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
16
-
-
3042613550
-
Likelihood-enhanced fast rotation functions
-
Storoni, L. C., McCoy, A. J., and Read, R. J. (2004) Likelihood-enhanced fast rotation functions. Acta Crystallogr. D Biol. Crystallogr. 60, 432-438
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 432-438
-
-
Storoni, L.C.1
McCoy, A.J.2
Read, R.J.3
-
17
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6, 458-463
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
18
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
20
-
-
0037779018
-
A graphical user interface to the CCP4 program suite
-
Potterton, E., Briggs, P., Turkenburg, M., and Dodson, E. (2003) A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr. 59, 1131-1137
-
(2003)
Acta Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 1131-1137
-
-
Potterton, E.1
Briggs, P.2
Turkenburg, M.3
Dodson, E.4
-
21
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
Kuzmic, P. (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal. Biochem. 237, 260-273
-
(1996)
Anal. Biochem.
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
22
-
-
26644444335
-
Novel reaction mechanism of GTP cyclohydrolase I: High resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative
-
Tanaka, Y., Nakagawa, N., Kuramitsu, S., Yokoyama, S., and Masui, R. (2005) Novel reaction mechanism of GTP cyclohydrolase I: high resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative. J. Biochem. 138, 263-275
-
(2005)
J. Biochem.
, vol.138
, pp. 263-275
-
-
Tanaka, Y.1
Nakagawa, N.2
Kuramitsu, S.3
Yokoyama, S.4
Masui, R.5
-
23
-
-
79958099694
-
-
version 1.1.0.57, University of Connecticut
-
Cole, J. L., and Lary, J.W. (2012) HeteroAnalysis, version 1.1.0.57, University of Connecticut
-
(2012)
HeteroAnalysis
-
-
Cole, J.L.1
Lary, J.W.2
-
24
-
-
84865761226
-
-
version 2.4.0, Thousand Oaks, CA
-
Hayes, D. B., Laue, T., and Philo, J. (2012) Sednterp, version 2.4.0, Thousand Oaks, CA
-
(2012)
Sednterp
-
-
Hayes, D.B.1
Laue, T.2
Philo, J.3
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