Mapping quantitative trait loci for kernel composition in almond

BMC Genetics

Volumn 13, Issue , 2012, Pages

  i Forcada, Carolina F ^a,b   i Martí, Àngel F ^a,c   I Company, Rafel S ^a  

^a Agrifood Institute of Aragón IA2   (Spain)

^b CSIC   (Spain)

^c Lab de Mejora Genética y Biología Molecular   (Spain)

Author keywords

Almond; Breeding; Genetic map; Kernel composition; Prunus amygdalus Batsch; QTL; Quality; SSRs

Indexed keywords

ALMOND; ARTICLE; CHEMICAL COMPOSITION; CONTROLLED STUDY; CORRELATION ANALYSIS; GENE SEQUENCE; GENETIC REGULATION; GENETIC VARIABILITY; MICROSATELLITE MARKER; NONHUMAN; PHENOTYPE; PLANT BREEDING; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; SEED KERNEL; SEED QUALITY;

BREEDING; CHROMOSOME MAPPING; GENETIC LINKAGE; MICROSATELLITE REPEATS; PRUNUS; QUANTITATIVE TRAIT LOCI;

PRUNUS DULCIS;

EID: 84865642429     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-13-47     Document Type: Article

References (71)

1. Socias i Company R, Kodad O, Alonso JM, Gradziel TM. Almond quality: a breeding perspective. Hortic Rev 2008, 34:197-238.
2. Sabate J, Hook DG. Almonds, walnuts, and serum lipids. Lipids in human nutrition 1996, 137-444. CRC Press, Boca Raton, Fla, Spiller GA.
3. Jenkins DJ, Kendall CW, Marchie A, Josse AR, Nguyen TH, Faulkner DA. Almonds reduce biomarkers of lipid peroxidation in older hyperlipidemic subjects. J Nutrition 2008, 138:908-913.
4. Senesi E, Rizzolo A, Colombo C, Testoni A. Influence of pre-processing storage conditions on peeled almond quality. Ital J Food Sci 1996, 2:115-125.
5. Kester DE, Cunningham S, Kader AA. Almonds. Encyclopedia of Food Science, Food Technology and Nutrition 1993, 126. Academic, London, .
6. Reische DW, Lillard DA, Eitenmiller RR. Antioxidants. Food Lipids. Chemistry, Nutrition, and Biotechnology 1998, 423-448. Marcel Dekker, New York, Akoh CC, Min DB.
7. Kamal-Eldin A, Appelqvist LA. The chemistry and antioxidant properties of tocopherols and tocotrienols. Lipids 1996, 31:671-701. 10.1007/BF02522884, 8827691.
8. Pongracz G, Weiser H, Matzinger D. Tocopherole-antioxidantien der Natur. Fat Sci Technol 1995, 97:90-104.
9. Krings U, Berger RG. Antioxidant activity of some roasted foods. Food Chem 2001, 72:223-229.
10. Davis P, Iwahashi CK, Yokahama W. Whole almonds activate gastrointestinal tract anti-proliferative signaling in APCmin (multiple intestinal neoplasia) mice. FASEB J 2003, 17:A1153.
11. Marwede V, Schierholt A, Molers C, Becker HC. Genotype x environment interactions and heritability of tocopherol contents in canola. Crop Sci 2004, 44:728-731.
12. López Ortiz MC, Kodad O, Prats MS, Socias i Company R. Variability in tocopherol concentrations in almond oil and its use as a selection criterion in almond breeding. J Hortic Sci Biotechnol 2006, 81:501-507.
13. Kodad O, Socias i Company R, Estopañan G, Juan T, Mamouni A. Tocopherol concentration in almond oil: Genetic variation and environmental effects under warm conditions. J Agric Food Chem 2011, 59:6137-6141. 10.1021/jf200323c, 21524140.
14. Sathe SK, Seram NP, Kshirsagar HH, Heber D, Lapsley KA. Fatty acid composition of California grown almonds. J Food Sci 2008, 73:C607-C614. 10.1111/j.1750-3841.2008.00936.x, 19021789.
15. Kamil A, Chen CYO. Health benefits of almonds beyond cholesterol reduction. J Agric Food Chem 2012,
16. Alonso JM, Kodad O, Gradziel TM, . Socias i Company R Almond. Fruit Breeding, Handbook of Plant Breeding 8 2012, 697-728. Springer Verlag, Heidelberg, Badenes ML, Byrne D, Socias i Company R.
17. Abdallah A, Ahumada MH, Gradziel TM. Oil content and fatty acid composition of almond kernels from different genotypes and California production regions. J Amer Soc Hortic Sci 1998, 123:1029-1033.
18. Saura Calixto F, Cañellas Mut J, Soler L. La almendra: composición, variedades, desarrollo y maduración 1988, INIA, Madrid, Spain, In Spanish.
19. Kodad O, Socias i Company R. Variability of oil content and of major fatty acid composition in almond (Prunus amygdalusBatsch) and its relationship with kernel quality. J Agric Food Chem 2008, 56:4096-4101. 10.1021/jf8001679, 18461963.
20. Barile D, Coïsson JD, Arlorio M, Rinaldi M. Identification of production area of Ossolano Italian cheese with chemometric complex approach. Food Control. 2006, 17:197-206.
21. Kodad O, Alonso JM, Font i Forcada C, . Socias i Company R Fruit quality in almond: chemical aspects for breeding strategies. Options Méditerr Ser A 2010, 94:235-243. Socias i Company R.
22. Font i Forcada C, Kodad O, Juan T, Estopañán G, Socias i Company R. Genetic variability and pollen effect on the transmission of the chemical components of the almond kernel. Span J Agric Res 2011, 9:781-789.
23. Socias i Company R. Fruit tree genetics at a turning point: the almond example. Theor Appl Genet 1998, 96:588-601.
24. Genome Database for Rosaceae http://www.rosaceae.org.
25. Joobeur T, Viruel MA, de Vicente MC, Jauregui B, Ballester J, Dettori MT, Verde I, Truco MJ, Messeguer R, Batlle I, et al. Construction of a saturted linkage map forPrunususing an almond x peach F-2 progeny. Theor Appl Genet 1998, 97:1034-1041.
26. Shulaev V, Korban SS, Sosinski B, Abott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Arús P, Dandekar AM, et al. Multiple models for Rosaceae genomics. Plant Physiol 2008, 147:985-1003. 10.1104/pp.107.115618, 2442536, 18487361.
27. Arús P, Yamamoto T, Dirlewanger E, Abbott AG. Synteny in the Rosaceae. Plant Breed Rev 2005, 27:175-211.
28. Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldré F, Cosson P, Howad W, Arús P. Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 2004, 101:9891-9896. 10.1073/pnas.0307937101, 470769, 15159547.
29. Fernández I, Martí A, Howad W, Tao R, Alonso JM, Arús P, Socias i Company R. Identification of qualitative trait loci associated with self-compatibility in aPrunusspecies. Tree Genet Genomes 2011, 7:629-639.
30. Tavassolian I, Rabiei G, Gregory D, Mnejja M, Wirthensohn MG, Hunt PW, Gibson JP, Ford CM, Sedglev M, Wu SB. Construction of an almond linkage map in an Australian population Nonpareil x Lauranne. BMC Genomics 2010, 11:551. 10.1186/1471-2164-11-551, 3091700, 20932335.
31. Dirlewanger E, Cosson P, Travaud M, Aranzana MJ, Poizat C, Zanetto A, Arús P, Laigret F. Development of microsatellite markers in peach [Prunus persica(L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus aviumL.). Theor Appl Genet 2002, 105:127-138. 10.1007/s00122-002-0867-7, 12582570.
32. Aranzana MJ, Garcia-Mas J, Carbó J, Arús P. Development and variability analisis of microsatellites markers in peach. Plant Breed 2002, 121:87-92.
33. Mnejja M, Garcia-Mas M, Howad W, Badenes ML, Arús P. Simple sequence repeat (SSR) markers of Japanese plum (Prunus salicinaLindl.) are highly polymorphic and transferable to peach and almond. Mol Ecol Notes 2004, 4:163-166.
34. Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Arús P. Mapping with a few plants: using selective mapping for microsatellite saturation of thePrunusreference map. Genetics 2005, 171:1305-1309. 10.1534/genetics.105.043661, 1456826, 16118196.
35. Sosinski B, Gannavarapu M, Hager LD, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbott AG. Characterization of microsatellite markers in peach (Prunus persica(L.) Batsch). Theor Appl Genet 2000, 101:421-428.
36. Yamamoto T, Mochida K, Imai T, Shi IZ, Ogiwara I, Hayashi T. Microsatellite markers in peach (Prunus persica(L.) Batsch) derived from an enriched genomic library and cDNA libraries. Mol Ecol Notes 2002, 2:298-302.
37. Cipriani G, Lot G, Huang HG, Marrazzo MT, Peterlunger E, Testolin R. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica(L.) Batsch): isolation, characterization and cross-species amplification inPrunus. Theor Appl Gen 1999, 99:65-72.
38. Testolin R, Marrazzo T, Cipriani G, Quarta R, Verde I, Dettori T, Pancaldi M, Sansavini S. Microsatellite DNA in peach (Prunus persica(L.) Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 2000, 43:512-520.
39. Cantini C, Iezzoni AF, Lamboy WF, Boritzki M, Struss D. DNA fingerprinting of tetraploid cherry germplasm using SSR. J Am Soc Hort Sci 2001, 126:205-209.
40. Downey LD, Iezzoni AF. Polymorphic DNA markers in cherry are identified using sequences from sweet cherry, peach and sour cherry. J Am Soc Hort Sci 2000, 125:76-80.
41. Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93:77-78. 10.1093/jhered/93.1.77, 12011185.
42. Kodad O. Criterios de selección y de evaluación de nuevas obtenciones autocompatibles en un programa de mejora genética del almendro (Prunus amygdalus Batsch) 2006, PhD Thesis, Lérida Univ.
43. Soll J, Shultz G. 2-Methy-6-phytylquinol and 2,3-dimethyl-5-phytylquinol as precursor of tocopherol synthesis in spinach chloroplasts. Phytochemistry 1980, 19:215-218.
44. Hofius D, Sonneewald U. Vitamin E biosynthesis: biochemistry meets cell biology. Trends Plant Sci 2003, 8:6-8. 10.1016/S1360-1385(02)00002-X, 12523993.
45. Garcia JM, Agar IT, Streif J. Fat content and fatty acid composition in individual seeds of pistachio varieties grown in Turkey. Gartenbauwissenschaft 1992, 57:130-133.
46. Skinner DZ, Bauchan GR, Auricht G, Hughes S. A method for the efficient management and utilization of large germplasm collections. Crop Sci 1999, 39:1237-1242.
47. Davies CS, Neilson SS, Neilson NC. Flavor improvement of soybean preparations by genetic removal of lipoxygenase 2. J Amer Oil Chem Soc 1987, 6:1428-1433.
48. Ballester J, de Vicente MC, Arús P, Socias i Company R. Genetic mapping of a major gene delaying blooming time in almond. Plant Breed 2001, 120:268-270.
49. Silva C, Garcia-Mas J, Sánchez AM, Arús P, Oliveira MM. Looking into flowering time in almond (Prunus dulcis(Mill) D. A. Webb): the candidate gene approach. Theor Appl Genet 2005, 110:959-968. 10.1007/s00122-004-1918-z, 15700145.
50. Sánchez-Pérez R, Howad W, Dicenta F, Arús P, Martínez-Gómez P. Mapping major genes and quantitative trait loci controlling agronomics traits in almond. Plant Breed 2007, 126:310-318.
51. Marwede V, Gul MK, Becker HC, Ecke W. Mapping of QTL controlling tocopherol content in winter oilseed rape. Plant Breed 2005, 124:20-26.
52. Endrigkeit J, Wang XX, Cai DG, Zhang CY, Long Y, Meng JL, Jung C. Genetic mapping, cloning, and functional characterization of the BnaX.VTE4 gene encoding a gamma-tocopherol methyltransferase from oilseed rape. Theor Appl Genet 2009, 119:567-575. 10.1007/s00122-009-1066-6, 19479236.
53. Jackson EW, Wise M, Bonman JM, Obert DE, Hu G, Peterson DM. QTLs affecting α-tocotrienol, α-tocopherol and total tocopherol concentrations detected in the Ogle/TAM O-301 oat mapping population. Crop Sci 2008, 48:2141-2152.
54. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, VanToai TT, Lohnes DG, Chung L, Specht JE. An integrated genetic linkage map of the soybean genome. Crop Sci 1999, 39:1464-1490.
55. Wong JC, Lambert RJ, Tadmor Y, Rocheford TR. QTL associated with accumulation of tocopherols in maize. Crop Sci 2003, 43:2257-2266.
56. Herrán A, Estioko L, Becker D, Rodriguez MJB, Rohde W, Ritter E. Linkage mapping and QTL analysis in coconut (Cocos nuciferaL.). Theor Appl Genet 2000, 101:292-300.
57. Singh R, Tan SG, Panandam JM, Rahman RA, Ooi LCL, Low ETL, Sharma M, Jansen J, Cheah SC. Mapping quantitative trait loci (QTLs) for fatty acid composition in an interspecific cross of oil palm. BMC Plant Biol 2009, 9:114. 10.1186/1471-2229-9-114, 2757029, 19706196.
58. Zhang JF, Qi CK, Pu HM, Chen S, Chen F, Gao JQ, Chen XJ GUH, Fu SZ. QTL identification for fatty acid content in rapeseed (Brassica napusL.). Acta Agron Sin 2008, 34:54-60.
59. Panthee DR, Pantalone VR, Saxton AM. Modifier QTL for fatty acid composition in soybean oil. Euphytica 2006, 152:67-73.
60. Hannapel D, Ohlrogge JB. Regulation of acyl carrier protein messenger RNA levels during seed and leaf development. Plant Physiol 1988, 86:1174-1178. 10.1104/pp.86.4.1174, 1054647, 16666050.
61. Serrano-Vega MJ, Garcés R, Martínez-Force E. Cloning, characterization and structural model of a FatA-type thioesterase from sunflower seeds (Helianthus annuusL.). Planta 2005, 221:868-880. 10.1007/s00425-005-1502-z, 15841386.
62. Zhang DQ, TAn XF, Xie LS, Qiu J, Hu FM. The main genes controlling the biosynthesis of fatty acids inCamellia oleiferaseeds. Acta Hort 2008, 769:49-54.
63. Janick J. Breeding intractable traits in fruit crops: dream the impossible dream. Introduction. Hortscience 1944, 2005:40.
64. Kester DE, Gradziel TM. Almonds. Fruit breeding, Nuts Vol. 3 1996, 1-97. Wiley, New York, Janick J, Moore JN.
65. Felipe AJ, . Socias i Company R Blanquerna', 'Cambra' y 'Felisia': tres nuevos cultivares autógamos de almendro. Inf Técn Econ Agrar 1999, 95 V:111-117. Socias i Company R.
66. Fernández i Martí A, Alonso JM, Espiau MT, Rubio-Cabetas MJ, . Socias i Company R Genetic diversity in Spanish and foreign almond germplasm assessed by molecular characterization with SSRs. J Am Soc Hort Sci 2009, 134:535-542. Socias i Company R.
67. Felipe AJ. El almendro: el material vegetal 2000, Integrum, Lérida.
68. Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 1987, 19:11-15.
69. Animal and vegetable fats and oils - Preparation of methyl esters of fatty acids.International Organization for Standardization. 2000, ISO standard 5509, Geneva, Switzerland.
70. López-Ortiz MC, Prats-Moya S, Sanahuja AB, Maestre-Pérez SE, Grané-Teruel N, Martín-Carratalá ML. Comparative study of tocopherol homologue content in four almond oil cultivars during two consecutive years. J Food Comp Anal 2008, 21:144-151.
71. Van Ooijen JW, Boer MP, Jansen RC, Maliepard C. MapQTL Version 4.0, Software for the calculation of QTL positions on genetic maps. Wageningen. Plant Research International 2002,