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Volumn 13, Issue 1, 2012, Pages

Using BAC transgenesis in zebrafish to identify regulatory sequences of the amyloid precursor protein gene in humans

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOID PRECURSOR PROTEIN; DNA BINDING PROTEIN; FORKHEAD TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR E4BP4; TRANSCRIPTION FACTOR GATA 3; UNCLASSIFIED DRUG;

EID: 84865641357     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-451     Document Type: Article
Times cited : (10)

References (43)
  • 1
    • 37849189265 scopus 로고    scopus 로고
    • A two decade contribution of molecular cell biology to the centennial of Alzheimer's disease: are we progressing toward therapy?
    • Dillen K, Annaert W. A two decade contribution of molecular cell biology to the centennial of Alzheimer's disease: are we progressing toward therapy?. Int Rev Cytol 2006, 254:215-300.
    • (2006) Int Rev Cytol , vol.254 , pp. 215-300
    • Dillen, K.1    Annaert, W.2
  • 2
  • 4
    • 0024075097 scopus 로고
    • The promoter of Alzheimer's disease amyloid A4 precursor gene
    • 457072, 3053167
    • Salbaum JM, Weidemann A, Lemaire HG, Masters CL, Beyreuther K. The promoter of Alzheimer's disease amyloid A4 precursor gene. EMBO J. 1988, 7:2807-2813. 457072, 3053167.
    • (1988) EMBO J. , vol.7 , pp. 2807-2813
    • Salbaum, J.M.1    Weidemann, A.2    Lemaire, H.G.3    Masters, C.L.4    Beyreuther, K.5
  • 5
    • 0025219026 scopus 로고
    • Genomic organization of the human amyloid beta-protein precursor gene
    • 10.1016/0378-1119(90)90310-N, 2110105
    • Yoshikai SI, Sasaki H, Dohura K, Fururya H, Sakaki Y. Genomic organization of the human amyloid beta-protein precursor gene. Gene 1990, 87:257-263. 10.1016/0378-1119(90)90310-N, 2110105.
    • (1990) Gene , vol.87 , pp. 257-263
    • Yoshikai, S.I.1    Sasaki, H.2    Dohura, K.3    Fururya, H.4    Sakaki, Y.5
  • 6
    • 0025967258 scopus 로고
    • The promoter activity of the gene encoding Alzheimer beta-amyloid precursor protein (APP) is regulated by two blocks of upstream sequences
    • Lahiri DK, Robakis NK. The promoter activity of the gene encoding Alzheimer beta-amyloid precursor protein (APP) is regulated by two blocks of upstream sequences. Brain Res Mol Brain Res 1991, 9:253-257.
    • (1991) Brain Res Mol Brain Res , vol.9 , pp. 253-257
    • Lahiri, D.K.1    Robakis, N.K.2
  • 7
    • 0032517094 scopus 로고    scopus 로고
    • Functional identification of the promoter of the gene encoding the Rhesus monkey beta-amyloid precursor protein
    • 10.1016/S0378-1119(98)00340-0, 9795200
    • Song W, Lahiri DK. Functional identification of the promoter of the gene encoding the Rhesus monkey beta-amyloid precursor protein. Gene 1998, 217:165-176. 10.1016/S0378-1119(98)00340-0, 9795200.
    • (1998) Gene , vol.217 , pp. 165-176
    • Song, W.1    Lahiri, D.K.2
  • 8
    • 0034608110 scopus 로고    scopus 로고
    • Analysis of the 5′-flanking region of the beta-amyloid precursor protein gene that contributes to increased promoter activity in differentiated neuronal cells
    • Lahiri DK, Song W, Ge YW. Analysis of the 5′-flanking region of the beta-amyloid precursor protein gene that contributes to increased promoter activity in differentiated neuronal cells. Brain Res Mol Brain Res 2000, 77:185-198.
    • (2000) Brain Res Mol Brain Res , vol.77 , pp. 185-198
    • Lahiri, D.K.1    Song, W.2    Ge, Y.W.3
  • 10
    • 16344379032 scopus 로고    scopus 로고
    • Characterization of the APP proximal promoter and 5'-untranslated regions: Identification of cell-type specific domains and implications in APP gene expression and Alzheimer's disease
    • Lahiri DK, Ge YW, Maloney B. Characterization of the APP proximal promoter and 5'-untranslated regions: Identification of cell-type specific domains and implications in APP gene expression and Alzheimer's disease. FASEB J. 2005, 19:653-665.
    • (2005) FASEB J. , vol.19 , pp. 653-665
    • Lahiri, D.K.1    Ge, Y.W.2    Maloney, B.3
  • 12
    • 0035912825 scopus 로고    scopus 로고
    • Phenserine regulates translation of beta-amyloid precursor protein mRNA by a putative interleukin-1 responsive element, a target for drug development
    • 10.1073/pnas.131152998, 34715, 11404470
    • Shaw KT, Utsuki T, Rogers J, Yu QS, Sambamurti K, Brossi A, Ge YW, Lahiri DK, Greig NH. Phenserine regulates translation of beta-amyloid precursor protein mRNA by a putative interleukin-1 responsive element, a target for drug development. Proc Natl Acad Sci USA 2001, 98:7605-7610. 10.1073/pnas.131152998, 34715, 11404470.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7605-7610
    • Shaw, K.T.1    Utsuki, T.2    Rogers, J.3    Yu, Q.S.4    Sambamurti, K.5    Brossi, A.6    Ge, Y.W.7    Lahiri, D.K.8    Greig, N.H.9
  • 13
    • 9444239191 scopus 로고    scopus 로고
    • Presence of a " CAGA box" in the APP gene unique to amyloid plaque-forming species and absent in all APP-1/2 genes: implications in Alzheimer's disease
    • Maloney B, Ge Y-W, Greig N, Lahiri DK. Presence of a " CAGA box" in the APP gene unique to amyloid plaque-forming species and absent in all APP-1/2 genes: implications in Alzheimer's disease. FASEB J. 2004, 18:1288-1290.
    • (2004) FASEB J. , vol.18 , pp. 1288-1290
    • Maloney, B.1    Ge, Y.-W.2    Greig, N.3    Lahiri, D.K.4
  • 14
    • 56049108103 scopus 로고    scopus 로고
    • Context dependent function of appb enhancer identified using enhancer trap-containing BACs as transgenes in Zebrafish
    • 10.1093/nar/gkn628, 2577333, 18832376
    • Shakes LA, Malcolm TL, Allen KL, De S, Harewood KR, Chatterjee PK. Context dependent function of appb enhancer identified using enhancer trap-containing BACs as transgenes in Zebrafish. Nucleic Acids Research 2008, 36:6237-6248. 10.1093/nar/gkn628, 2577333, 18832376.
    • (2008) Nucleic Acids Research , vol.36 , pp. 6237-6248
    • Shakes, L.A.1    Malcolm, T.L.2    Allen, K.L.3    De, S.4    Harewood, K.R.5    Chatterjee, P.K.6
  • 15
    • 33645833857 scopus 로고    scopus 로고
    • Conservation of RET regulatory function from human to Zebrafish without sequence similarity
    • Fisher S, Grice EA, Vinton RM, Bessling SL, McCallion AS. Conservation of RET regulatory function from human to Zebrafish without sequence similarity. Science 2006, 14:276-279.
    • (2006) Science , vol.14 , pp. 276-279
    • Fisher, S.1    Grice, E.A.2    Vinton, R.M.3    Bessling, S.L.4    McCallion, A.S.5
  • 18
    • 72649096841 scopus 로고    scopus 로고
    • Functionally conserved cis-regulatory elements of COL18A1 identified through zebrafish transgenesis
    • 10.1016/j.ydbio.2009.10.028, 19895802
    • Kague E, Bessling SL, Lee J, Hu G, Passos-Bueno MR, Fisher S. Functionally conserved cis-regulatory elements of COL18A1 identified through zebrafish transgenesis. Dev Biol. 2010, 337:496-505. 10.1016/j.ydbio.2009.10.028, 19895802.
    • (2010) Dev Biol. , vol.337 , pp. 496-505
    • Kague, E.1    Bessling, S.L.2    Lee, J.3    Hu, G.4    Passos-Bueno, M.R.5    Fisher, S.6
  • 21
    • 2342533005 scopus 로고    scopus 로고
    • Retrofitting BACs and PACs with LoxP Transposons to Generate Nested Deletions. " Bacterial Artificial Chromosomes" vol 1, pp 231-241
    • The Humana Press Inc, Shaying Z, Marvin S
    • Chatterjee PK. Retrofitting BACs and PACs with LoxP Transposons to Generate Nested Deletions. " Bacterial Artificial Chromosomes" vol 1, pp 231-241. Methods in Mol. Biology 2004, The Humana Press Inc, Shaying Z, Marvin S.
    • (2004) Methods in Mol. Biology
    • Chatterjee, P.K.1
  • 22
    • 2342535031 scopus 로고    scopus 로고
    • Preparing Nested Deletions Template DNA for Field Inversion Gel Electrophoresis Analyses and Position-Specific End Sequencing With Transposon Primers. " Bacterial Artificial Chromosomes" vol 1, pp 243-254
    • The Humana Press Inc, Shaying Z, Marvin S
    • Chatterjee PK, Baker JC. Preparing Nested Deletions Template DNA for Field Inversion Gel Electrophoresis Analyses and Position-Specific End Sequencing With Transposon Primers. " Bacterial Artificial Chromosomes" vol 1, pp 243-254. Methods in Mol. Biology 2004, The Humana Press Inc, Shaying Z, Marvin S.
    • (2004) Methods in Mol. Biology
    • Chatterjee, P.K.1    Baker, J.C.2
  • 23
    • 79960019678 scopus 로고    scopus 로고
    • Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons
    • 10.1186/1471-2164-12-351, 3146455, 21736732
    • Shakes LA, Abe G, Eltayeb MA, Wolf HM, Kawakami K, Chatterjee PK. Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons. BMC Genomics 2011, 12:351. 10.1186/1471-2164-12-351, 3146455, 21736732.
    • (2011) BMC Genomics , vol.12 , pp. 351
    • Shakes, L.A.1    Abe, G.2    Eltayeb, M.A.3    Wolf, H.M.4    Kawakami, K.5    Chatterjee, P.K.6
  • 24
    • 0027672685 scopus 로고
    • Purification of an active TATA-binding protein-containing factor using a monoclonal antibody that recognizes the human TATA-binding protein
    • Chatterjee PK, Pruzan R, Flint SJ. Purification of an active TATA-binding protein-containing factor using a monoclonal antibody that recognizes the human TATA-binding protein. Protein Expr Purif. 1993, 5:445-455.
    • (1993) Protein Expr Purif. , vol.5 , pp. 445-455
    • Chatterjee, P.K.1    Pruzan, R.2    Flint, S.J.3
  • 25
    • 0031951663 scopus 로고    scopus 로고
    • ETS-core binding factor: a common composite motif in antigen receptor gene enhancers
    • 108845, 9488447
    • Erman B, Cortes M, Nikolajczyk BS, Speck NA, Sen R. ETS-core binding factor: a common composite motif in antigen receptor gene enhancers. Mol. Cell. Biol. 1998, 18:1322-1330. 108845, 9488447.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1322-1330
    • Erman, B.1    Cortes, M.2    Nikolajczyk, B.S.3    Speck, N.A.4    Sen, R.5
  • 26
    • 66049116723 scopus 로고    scopus 로고
    • A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation
    • 10.1084/jem.20081621, 2715034, 19414554
    • Chakraborty T, Perlot T, Subrahmanyam R, Jani A, Goff PH, Zhang Y, Ivanova I, Alt FW, Sen R. A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation. J. Exp. Med. 2009, 206:1019-1027. 10.1084/jem.20081621, 2715034, 19414554.
    • (2009) J. Exp. Med. , vol.206 , pp. 1019-1027
    • Chakraborty, T.1    Perlot, T.2    Subrahmanyam, R.3    Jani, A.4    Goff, P.H.5    Zhang, Y.6    Ivanova, I.7    Alt, F.W.8    Sen, R.9
  • 28
    • 25444488956 scopus 로고    scopus 로고
    • Transposon tools and methods in zebrafish
    • 10.1002/dvdy.20516, 16110506
    • Kawakami K. Transposon tools and methods in zebrafish. Developmental Dynamics 2005, 234:244-254. 10.1002/dvdy.20516, 16110506.
    • (2005) Developmental Dynamics , vol.234 , pp. 244-254
    • Kawakami, K.1
  • 29
    • 38849083900 scopus 로고    scopus 로고
    • Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like
    • Nagayoshi S, Hayashi E, Abe G, Osato N, Asakawa K, Urasaki A, Horikawa K, Ikeo K, Takeda H, Kawakami K. Insertional mutagenesis by the Tol2 transposon-mediated enhancer trap approach generated mutations in two developmental genes: tcf7 and synembryn-like. Development 2008, 135(1):159-169.
    • (2008) Development , vol.135 , Issue.1 , pp. 159-169
    • Nagayoshi, S.1    Hayashi, E.2    Abe, G.3    Osato, N.4    Asakawa, K.5    Urasaki, A.6    Horikawa, K.7    Ikeo, K.8    Takeda, H.9    Kawakami, K.10
  • 31
    • 80052781416 scopus 로고    scopus 로고
    • Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions
    • 10.1371/journal.pone.0024824, 3172297, 21935474
    • Royo JL, Hidalgo C, Roncero Y, Seda MA, Akalin A, Lenhard B, Casares F, Gómez-Skarmeta JL. Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions. PLoS One. 2011, 6:e24824. 10.1371/journal.pone.0024824, 3172297, 21935474.
    • (2011) PLoS One. , vol.6
    • Royo, J.L.1    Hidalgo, C.2    Roncero, Y.3    Seda, M.A.4    Akalin, A.5    Lenhard, B.6    Casares, F.7    Gómez-Skarmeta, J.L.8
  • 32
    • 84921738224 scopus 로고    scopus 로고
    • InTech, Rijeka, Croatia (2011) ISBN 978-953-307-725-3, Functionalizing Bacterial Artificial Chromosomes with Transposons to explore Gene Regulation
    • Wolf HM, Iranloye O, Norford DC, Chatterjee PK, . Functionalizing Bacterial Artificial Chromosomes with Transposons to explore Gene Regulation Bacterial Artificial Chromosomes 2011, 45-62. InTech, (http://www.intechopen.com), Rijeka, Croatia (2011) ISBN 978-953-307-725-3, Functionalizing Bacterial Artificial Chromosomes with Transposons to explore Gene Regulation.
    • (2011) Bacterial Artificial Chromosomes , pp. 45-62
    • Wolf, H.M.1    Iranloye, O.2    Norford, D.C.3    Chatterjee, P.K.4
  • 33
    • 0344625380 scopus 로고    scopus 로고
    • Fork head domain genes in zebrafish
    • 10.1007/s004270050179, 9683740
    • Odenthal J, Nüsslein-Volhard C. Fork head domain genes in zebrafish. Dev Genes Evol 1998, 208:245-258. 10.1007/s004270050179, 9683740.
    • (1998) Dev Genes Evol , vol.208 , pp. 245-258
    • Odenthal, J.1    Nüsslein-Volhard, C.2
  • 34
    • 0036842706 scopus 로고    scopus 로고
    • E4BP4/NFIL3, a PAR-related bZIP factor with many roles
    • 10.1002/bies.10176, 12386933
    • Cowell IG. E4BP4/NFIL3, a PAR-related bZIP factor with many roles. BioEssays 2002, 24:1023-1029. 10.1002/bies.10176, 12386933.
    • (2002) BioEssays , vol.24 , pp. 1023-1029
    • Cowell, I.G.1
  • 35
    • 62849114200 scopus 로고    scopus 로고
    • Regulation of clock-controlled genes in mammals
    • 10.1371/journal.pone.0004882, 2654074, 19287494
    • Bozek K, Relogio A, Kielbasa SM, Heine M, Dame C, Kramer A, Herzel H. Regulation of clock-controlled genes in mammals. PLOS One 2009, 4:e4882. 10.1371/journal.pone.0004882, 2654074, 19287494.
    • (2009) PLOS One , vol.4
    • Bozek, K.1    Relogio, A.2    Kielbasa, S.M.3    Heine, M.4    Dame, C.5    Kramer, A.6    Herzel, H.7
  • 36
    • 6944239882 scopus 로고    scopus 로고
    • The CES-2-related transcription factor E4BP4 is an intrinsic regulator of motoneuron growth and survival
    • 10.1242/dev.01313, 15306565
    • Junghans D, Chauvet S, Buhler E, Dudley K, Sykes T, Henderson CE. The CES-2-related transcription factor E4BP4 is an intrinsic regulator of motoneuron growth and survival. Development 2004, 131:4425-4434. 10.1242/dev.01313, 15306565.
    • (2004) Development , vol.131 , pp. 4425-4434
    • Junghans, D.1    Chauvet, S.2    Buhler, E.3    Dudley, K.4    Sykes, T.5    Henderson, C.E.6
  • 39
    • 79959558062 scopus 로고    scopus 로고
    • A distal enhancer in Il12b is the target of transcriptional repression by the STAT3 pathway and requires the basic leucine zipper (B-ZIP) protein NFIL3
    • 2011286
    • Smith AM, Qualls JE, O'Brien K, Balouzian L, Johnson PF, Schultz-Cherry S, Smale ST, Murray PJ. A distal enhancer in Il12b is the target of transcriptional repression by the STAT3 pathway and requires the basic leucine zipper (B-ZIP) protein NFIL3. J Biol Chem 2011, 2011286:23582-23590.
    • (2011) J Biol Chem , pp. 23582-23590
    • Smith, A.M.1    Qualls, J.E.2    O'Brien, K.3    Balouzian, L.4    Johnson, P.F.5    Schultz-Cherry, S.6    Smale, S.T.7    Murray, P.J.8
  • 40
    • 0032167787 scopus 로고    scopus 로고
    • Importance of immunological and inflammatory processes in the pathogenesis and therapy of Alzheimer's disease
    • 10.3109/00207459809003341, 9777440
    • Popović M, Caballero-Bleda M, Puelles L, Popović N. Importance of immunological and inflammatory processes in the pathogenesis and therapy of Alzheimer's disease. Int J Neurosci 1998, 95:203-236. 10.3109/00207459809003341, 9777440.
    • (1998) Int J Neurosci , vol.95 , pp. 203-236
    • Popović, M.1    Caballero-Bleda, M.2    Puelles, L.3    Popović, N.4
  • 42
    • 70349608875 scopus 로고    scopus 로고
    • Detailed expression pattern of Foxp1 and its possible roles in neurons of the spinal cord during embryogenesis
    • Morikawa Y, Komori T, Hisaoka T, Senba E. Detailed expression pattern of Foxp1 and its possible roles in neurons of the spinal cord during embryogenesis. Dev Neurosc. 2009, 31:511-522.
    • (2009) Dev Neurosc. , vol.31 , pp. 511-522
    • Morikawa, Y.1    Komori, T.2    Hisaoka, T.3    Senba, E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.