Flow cytometry of fluorescent proteins

Methods

Volumn 57, Issue 3, 2012, Pages 318-330

  Telford, William G ^a   Hawley, Teresa ^b   Subach, Fedor ^c   Verkhusha, Vladislav ^c   Hawley, Robert G ^b  

^a NATIONAL CANCER INSTITUTE   (United States)

^b GEORGE WASHINGTON UNIVERSITY SCHOOL OF MEDICINE AND HEALTH SCIENCES   (United States)

^c ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

CFP; DsRed; Flow cytometry; Fluorescent protein; GFP; MCherry; YFP

Indexed keywords

CYAN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN; RED FLUORESCENT PROTEIN; YELLOW FLUORESCENT PROTEIN;

DIODE LASER; FILTER; FLOW CYTOMETRY; FLUORESCENCE RESONANCE ENERGY TRANSFER; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN ISOLATION; REVIEW;

BACTERIAL PROTEINS; CELLS, CULTURED; ESCHERICHIA COLI; FLOW CYTOMETRY; FLUORESCENT DYES; GENETIC VECTORS; GREEN FLUORESCENT PROTEINS; HUMANS; LUMINESCENT PROTEINS; RECOMBINANT FUSION PROTEINS; SPECTROMETRY, FLUORESCENCE;

EID: 84865585678     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2012.01.003     Document Type: Review

References (56)

1. Shaner N.C., Steinbach P.A., Tsien R.Y. Nat. Methods 2005, 2:905-909.
2. Zhang J., Campbell R.E., Ting A.Y., Tsien R.Y. Nat. Rev. Mol. Cell Biol. 2002, 3:906-918.
3. Shaner N.C., Patterson G.H., Davidson M.W. J. Cell Sci. 2007, 120:4247-4260.
4. Chalfie M., Tu Y., Euskirchen G., Ward W.W., Prasher D.C. Science 1994, 263:802-805.
5. Cubitt A.B., Heim R., Adams S.R., Boyd A.E., Gross L.A., Tsien R.Y. Trends Biochem. Sci. 1995, 20:448-455.
6. Tsien R.Y. Annu. Rev. Biochem. 1998, 67:509-544.
7. Shapiro H.M., Perlmutter N.G. Cytometry 2001, 44:133-136.
8. Beavis A.J., Kalejta R.F. Cytometry 1999, 37:68-73.
9. Hawley T.S., Telford W.G., Ramezani A., Hawley R.G. BioTechniques 2001, 30:1028-1034.
10. Hawley T.S., Telford W.G., Ramezani A., Hawley R.G. Stem Cell 2001, 19:118-124.
11. Matz M.V., Fradkov A.F., Labas Y.A., Savitsky A.P., Zaraisky A.G., Markelov M.L., Lukyanov S.A. Nat. Biotechnol. 1999, 17:969-973.
12. Baird G.S., Zacharias D.A., Tsien R.Y. PNAS 2000, 97:11984-11989.
13. Verkhusha V.V., Chudakov D.M., Gurskaya N.G., Lukyanov S., Lukyanov K.A. Chem. Biol. 2004, 11:845-854.
14. Chudakov D.M., Lukyanov S., Lukyanov K.A. Trends Biotech. 2005, 23:605-613.
15. Chudakov D.M., Matz M.V., Lukyanov S., Lukyanov K.A. Phys. Rev. 2010, 90:1103-1163.
16. N.G. Gurskaya, A.P. Savitsky, Y.G. Yanushevich, S.A. Lukyanov, K.A. Lukyanov, BMC Biochem. 2001, 2-6 (). http://www.biomedcentral.com/1471-2091/2/6.
17. Campbell R.E., Tour O., Palmer A.E., Steinbach P.A., Baird G.S., Zacharias D.A., Tsien R.Y. PNAS 2002, 99:7877-7882.
18. Shaner N.C., Campbell R.E., Steinbach P.A., Giepmans B.N.G., Palmer A.E., Tsien R.Y. Nat. Biotechnol. 2004, 22:1567-1572.
19. Wang L., Jackson W.C., Steinbach P.A., Tsien R.Y. PNAS 2004, 101:16745-16749.
20. Verkhusha V.V., Lukyanov K.A. Nat. Biotech. 2004, 22:289-296.
21. Alieva N.O., Konzen K.A., Field S.F., Meleshkevitch E.A., Hunt M.E., Beltran-Ramirez V., Miller D.J., Wiedenmann J., Salih A., Matz M.V. PLoS ONE 2008, 3:e2680.
22. Gurksaya N.G., Fradkov A.F., Terkikh A., Matz M.V., Labas Y.A., Martynov V.I., Yanushevich Y.G., Lukyanov K.A., Lukyanov S.A. FEBS Lett. 2001, 507:16-20.
23. S.G. Olenych, N.S. Claxton, G.K. Ottenberg, M.W. Davidson, The fluorescent protein color palette, in: J.P. Darzynkiewicz, Z. Dobrucki, J. Hoffman, R.A. Nolan, J.P. Orfao, A. Rabinovitch, P.S. (Eds), Current Protocols in Cell Biology, Robinson, John Wiley and Sons, New York, NY, 2007, 21.5.1-21.5.34.
24. Merzlyak E.M., Goedhart J., Shcherbo D., Bulina M.E., Shcheglov A.S., Fradkov A.F., Gaintzeva A., Lukyanov K.A., Lukyanov S., Gadella T.W.J., Chudakov D.M. Nat. Methods 2007, 5:555-557.
25. Shcherbo D., Merzlyak E.M., Chepurnykh T.V., Fradkov A.F., Ermakova G.V., Solovieva E.A., Lukyanov K.A., Bogdanova E.A., Zaraisky A.G., Lukyanov S., Chudakov D.M. Nat. Methods 2007, 4:741-746.
26. Kredel S., Neinhaus K., Oswald F., Wolff M., Ivanchenko S., Cymer F., Jeromin A., Michel F.J., Spindler K.-D., Heilker R., Nienhaus G.U., Wiedenmann J. Cell Chem. Biol. 2008, 15:224-233.
27. Lin M.Z., McKeown M.R., Ng H.-L., Aguilera T.A., Shaner N.C., Campbell R.E., Adams S.R., Gross L.A., Ma W., Alber T., Tsien R.Y. Cell Chem. Biol. 2009, 16:1169-1179.
28. Strack R.L., Hein B., Bhattacharyya D., Hell S.W., Keenan R.J., Glick B.S. Biochemistry 2009, 48:8279-8281.
29. Morozova K.S., Piatkevich K.D., Gould T.J., Zhang J., Bewersdorf J., Verkhusha V.V. Biophys. J. 2010, 99:L13-L15.
30. Shcherbo D., Shemiakina I.I., Ryabova A.V., Luker K.E., Schmidt B.T., Souslova E.A., Gorodnicheva T.V., Strukova L., Shidlovskiy K.M., Britanova O.V., Zaraisky A.G., Lukyanov K.A., Loschenov V.B., Luker G.D., Chudakov D.M. Nat. Methods 2010, 7:827-830.
31. Piatkevich K.D., Hulit J., Subach O.M., Wu B., Abdulla A., Segall J.E., Verkhusha V.V. PNAS 2010, 107:5369-5374.
32. Shapiro H.M., Telford W.G. Lasers for flow cytometry. Current Protocols in Cytometry 2009, 1.9. John Wiley and Sons, New York, NY. J.P. Robinson, Z. Darzynkiewicz, J. Dobrucki, R.A. Hoffman, J.P. Nolan, A. Orfao, P.S. Rabinovitch (Eds.).
33. Telford W.G., Hawley T.S., Hawley R.G. Cytometry 2003, 54A:48-55.
34. Perfetto S.P., Roederer M. Cytometry 2007, 71A:73-79.
35. Telford W.G., Murga M., Hawley T., Hawley R.G., Packard B.Z., Komoriya A., Haas R., Hubert C. Cytometry 2005, 68A:36-44.
36. Ai H.-W., Shaner N.C., Cheng Z., Tsien R.Y., Campbell R.E. Biochemistry 2007, 46:5904-5910.
37. Mena M.A., Treynor T.P., Mayo S.L., Daugherty P.S. Nat. Biotech. 2006, 24:1569-1571.
38. Subach O.M., Gunderov I.S., Yoshimura M., Subach F.V., Zhang J., Gruenwald D., Souslova E.A., Chudakov D.M., Verkhusha V.V. Cell Chem. Biol. 2008, 15:1116-1124.
39. Rizzo M.A., Springer G.H., Granada B., Piston D.W. Nat. Biotech. 2004, 22:445-449.
40. Nguyen A.W., Daugherty P.S. Nat. Biotech. 2005, 23:355-360.
41. Heim R., Cubitt A.B., Tsien R.Y. Nature 1995, 373:663-664.
42. Heim R., Prasher D.C., Tsien R.Y. Proc. Natl. Acad. Sci. USA 1994, 91:12501-12504.
43. Ilagan R.P., Rhoades E., Gruber D.F., Kao H.-T., Pieribone V.A., Regan L. FEBS J. 2010, 277:1967-1978.
44. Griesbeck O., Baird G.S., Campbell R.E., Zacharias D.A., Tsien R.Y. J. Biol. Chem. 2001, 31:29188-29194.
45. Nagai T., Ibata K., Park E.S., Kubota M., Mikoshiba K., Miyawaki A. Nat. Biotech. 2002, 20:87-90.
46. Strack R.L., Bhattacharyya D., Glick B.S., Keenan R.J. BMC Biotech. 2009, 9:32. 10.1186/1472-6750-9-32.
47. Telford W.G., Babin S.A., Khorev S.V., Rowe S.H. Cytometry A 2009, 75:1031-1039.
48. Kapoor V., Subach F.V., Kozlov V.G., Grudinin A., Verkhusha V.V., Telford W.G. Nat. Methods 2007, 4:678-679.
49. Kapoor V., Karpov V., Linton C., Subach F.V., Verkhusha V.V., Telford W.G. Cytometry 2008, 73:570-577.
50. Piatkevich K.D., Verkhusha V.V. Curr. Opin. Chem. Biol. 2010, 14:23-29.
51. Stepanenko O.V., Verkhusha V.V., Kuznetsova I.M., Uversky V.N., Turoverov K.K. Curr. Protein Pept. Sci. 2008, 9:338-369.
52. Markwardt M.L., Kremers G.J., Kraft C.A., Ray K., Cranfill P.J., Wilson K.A., Day R.N., Wachter R.M., Davidson M.W., Rizzo M.A. PLoS One. 2011, 6:e17896.
53. Goedhart J., van Weeren L., Hink M.A., Vischer N.O., Jalink K., Gadella T.W. Nat. Methods 2010, 7:137-139.
54. Wu B., Piatkevich K.D., Lionnet T., Singer R.H., Verkhusha V.V. Curr. Opin. Cell Biol. 2001, 23:310-317.
55. Shu X., Royant A., Kin M.Z., Aguilera T.A., Lev-Ram V., Steinbach P.A., Tsien R.Y. Science 2009, 324:804-807.
56. Filonov G.S., Piatkevich K.D., Ting L.M., Zhang J., Verkhusha K.Kim V.V. Nat. Biotechnol. 2001, 29:575-761.