Nonculture-based identification of bacteria in milk by protein fingerprinting

Proteomics

Volumn 12, Issue 17, 2012, Pages 2739-2745

  Barreiro, Juliana Regina ^a   Braga, Patricia Aparecida Campos ^a,b   Ferreira, Christina Ramires ^b   Kostrzewa, Markus ^c   Maier, Thomas ^c   Wegemann, Beatrix ^c   Böettcher, Viktoria ^c   Eberlin, Marcos N ^b   dos Santos, Marcos Veiga ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

^c BRUKER DALTONIK GMBH   (Germany)

Author keywords

Bacteria; Mass spectrometry; Microbiology; Microorganisms; Protein biomarker

Indexed keywords

ARTICLE; BACTERIAL COUNT; BACTERIAL LOAD; BACTERIAL STRAIN; BACTERIUM CONTAMINATION; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BIOINFORMATICS; COLONY FORMING UNIT; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; INCUBATION TEMPERATURE; MILK; NONHUMAN; PRIORITY JOURNAL; PROTEIN FINGERPRINTING; PROTEIN MODIFICATION; STAPHYLOCOCCUS AUREUS;

ANIMALS; BACTERIA; BACTERIAL PROTEINS; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; MILK; PEPTIDE MAPPING; SENSITIVITY AND SPECIFICITY; SOFTWARE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STAPHYLOCOCCUS AUREUS;

BACTERIA (MICROORGANISMS); ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; STAPHYLOCOCCUS AUREUS;

EID: 84865554531     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201200053     Document Type: Article

References (27)

1. Rajendhran, J., Gunasekaran, P., Microbial phylogeny and diversity: small subunit ribosomal RNA sequence analysis and beyond. Microbiol. Res. 2011, 166, 99-110.
2. Koskinen, M. T., Holopainen, J., Pyorala, S., Bredbacka, P. et al., Analytical specificity and sensitivity of a real-time polymerase chain reaction assay for identification of bovine mastitis pathogens. J. Dairy Sci. 2009, 92, 952-959.
3. Seng, P., Rolain, J. M., Fournier, P. E., La Scola, B. et al., MALDI-TOF-mass spectrometry applications in clinical microbiology. Future Microbiol. 2010, 5, 1733-1754.
4. Bizzini, A., Greub, G., Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification. Clin. Microbiol. Infect. 2010, 16, 1614-1619.
5. Seng, P., Drancourt, M., Gouriet, F., La Scola, B. et al., Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Infect. Dis. 2009, 49, 543-551.
6. Ilina, E. N., Borovskaya, A. D., Malakhova, M. M., Vereshchagin, V. A. et al., Direct bacterial profiling by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry for identification of pathogenic Neisseria. J. Mol. Diagn. 2009, 11, 75-86.
7. Ilina, E. N., Borovskaya, A. D., Serebryakova, M. V., Chelysheva, V. V. et al., Application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the study of Helicobacter pylori. Rapid Commun. Mass Spectrom. 24, 328-334.
8. Mellmann, A., Bimet, F., Bizet, C., Borovskaya, A. D. et al., High interlaboratory reproducibility of matrix-assisted laser desorption ionization-time of flight mass spectrometry-based species identification of nonfermenting bacteria. J. Clin. Microbiol. 2009, 47, 3732-3734.
9. Fenselau, C., Demirev, P. A., Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom. Rev. 2001, 20, 157-171.
10. dos Reis, C. B., Barreiro, J. R., Moreno, J. F., Porcionato, M. A. et al., Evaluation of somatic cell count thresholds to detect subclinical mastitis in Gyr cows. J. Dairy Sci. 2011, 94, 4406-4412.
11. Hovinen, M., Pyorala, S., Invited review: udder health of dairy cows in automatic milking. J. Dairy Sci. 2011, 94, 547-562.
12. Pyorala, S., Indicators of inflammation in the diagnosis of mastitis. Vet. Res. 2003, 34, 565-578.
13. Auldist, M. J., Hubble, I. B., Effects of mastitis on raw milk and dairy products. Aust. J. Dairy Technol. 1998, 53, 28-36.
14. Pankey, J. W., Drechsler, P. A., Wildman, E. E., Mastitis prevalence in primigravid heifers at parturition. J. Dairy Sci. 1991, 74, 1550-1552.
15. Viguier, C., Arora, S., Gilmartin, N., Welbeck, K. et al., Mastitis detection: current trends and future perspectives. Trends Biotechnol. 2009, 27, 486-493.
16. Bes, M., Guerin-Faublee, V., Meugnier, H., Etienne, J. et al., Improvement of the identification of staphylococci isolated from bovine mammary infections using molecular methods. Vet. Microbiol. 2000, 71, 287-294.
17. Couto, I., Pereira, S., Miragaia, M., Sanches, I. S. et al., Identification of clinical staphylococcal isolates from humans by internal transcribed spacer PCR. J. Clin. Microbiol. 2001, 39, 3099-3103.
18. Skow, A., Mangold, K. A., Tajuddin, M., Huntington, A. et al., Species-level identification of staphylococcal isolates by real-time PCR and melt curve analysis. J. Clin. Microbiol. 2005, 43, 2876-2880.
19. Barreiro, J. R., Ferreira, C. R., Sanvido, G. B., Kostrzewa, M. et al., Short communication: Identification of subclinical cow mastitis pathogens in milk by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Dairy Sci. 2010, 93, 5661-5667.
20. Kok, J., Thomas, L. C., Olma, T., Chen, S. C. et al., Identification of bacteria in blood culture broths using matrix-assisted laser desorption-ionization Sepsityper and time of flight mass spectrometry. PLoS One 2011, 6, e23285.
21. Schubert, S., Weinert, K., Wagner, C., Gunzl, B. et al., Novel, improved sample preparation for rapid, direct identification from positive blood cultures using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry. J. Mol. Diagn. 2011, 13, 701-706.
22. Lartigue, M. F., Hery-Arnaud, G., Haguenoer, E., Domelier, A. S. et al., Identification of Streptococcus agalactiae isolates from various phylogenetic lineages by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 2009, 47, 2284-2287.
23. Barbuddhe, S. B., Maier, T., Schwarz, G., Kostrzewa, M. et al., Rapid identification and typing of listeria species by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Appl. Environ. Microbiol. 2008, 74, 5402-5407.
24. Moussaoui, W., Jaulhac, B., Hoffmann, A. M., Ludes, B. et al., Matrix-assisted laser desorption ionization time-of-flight mass spectrometry identifies 90% of bacteria directly from blood culture vials. Clin. Microbiol. Infect. 2010, 16, 1631-1638.
25. Christner, M., Rohde, H., Wolters, M., Sobottka, I. et al., Rapid identification of bacteria from positive blood culture bottles by use of matrix-assisted laser desorption-ionization time of flight mass spectrometry fingerprinting. J. Clin. Microbiol. 2010, 48, 1584-1591.
26. Szabados, F., Michels, M., Kaase, M., Gatermann, S., The sensitivity of direct identification from positive BacT/ALERT (TM) (bioMerieux) blood culture bottles by matrix-assisted laser desorption ionization time-of-flight mass spectrometry is low. Clin. Microbiol. Infec. 2011, 17, 192-195.
27. Saffert, R. T., Cunningham, S. A., Ihde, S. M., Jobe, K. E. et al., Comparison of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometer to BD Phoenix automated microbiology system for identification of gram-negative bacilli. J. Clin. Microbiol. 2011, 49, 887-892.