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Volumn 166, Issue 2, 2011, Pages 99-110

Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond

Author keywords

16S rRNA; Diversity; Metagenomics; Multilocus sequence analysis; Phylogeny

Indexed keywords

16S RRNA; DIVERSITY; METAGENOMICS; PHYLOGENY; SEQUENCE ANALYSIS;

EID: 78651414310     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2010.02.003     Document Type: Review
Times cited : (189)

References (70)
  • 1
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria
    • Asai T., Zaporojets D., Squires C., Squires C.L. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc Natl Acad Sci USA 1999, 96:1971-1976.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaporojets, D.2    Squires, C.3    Squires, C.L.4
  • 2
    • 2342586717 scopus 로고    scopus 로고
    • 16S rDNA primers and the unbiased assessment of thermophile diversity
    • Baker G.C., Cowan D.A. 16S rDNA primers and the unbiased assessment of thermophile diversity. Biochem Soc Trans 2004, 32:218-221.
    • (2004) Biochem Soc Trans , vol.32 , pp. 218-221
    • Baker, G.C.1    Cowan, D.A.2
  • 3
    • 60149098267 scopus 로고    scopus 로고
    • SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses
    • Barker M.S., Dlugosch K.M., Reddy A.C., et al. SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses. Bioinformatics 2009, 25:535-536.
    • (2009) Bioinformatics , vol.25 , pp. 535-536
    • Barker, M.S.1    Dlugosch, K.M.2    Reddy, A.C.3
  • 5
    • 0030025916 scopus 로고    scopus 로고
    • A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences
    • Brunk C.F., Avaniss-Aghajani E., Brunk C.A. A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences. Appl Environ Microbiol 1996, 62:872-879.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 872-879
    • Brunk, C.F.1    Avaniss-Aghajani, E.2    Brunk, C.A.3
  • 7
    • 0031811165 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol
    • Chandler D.P., Brockman F.J., Bailey T.J., Fredrickson J.K. Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol. Microb Ecol 1998, 36:37-50.
    • (1998) Microb Ecol , vol.36 , pp. 37-50
    • Chandler, D.P.1    Brockman, F.J.2    Bailey, T.J.3    Fredrickson, J.K.4
  • 8
    • 58949102552 scopus 로고    scopus 로고
    • Lactobacillus phylogenomics - towards a reclassification of the genus
    • Claesson M.J., van Sinderen D., O'Toole P.W. Lactobacillus phylogenomics - towards a reclassification of the genus. Int J Syst Evol Microbiol 2008, 58:2945-2954.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 2945-2954
    • Claesson, M.J.1    van Sinderen, D.2    O'Toole, P.W.3
  • 9
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan F.M. What are bacterial species?. Annu Rev Microbiol 2002, 56:457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 10
    • 0014868747 scopus 로고
    • Polyphasic taxonomy of the genus Vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species
    • Colwell R.R. Polyphasic taxonomy of the genus Vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species. J Bacteriol 1970, 104:410-433.
    • (1970) J Bacteriol , vol.104 , pp. 410-433
    • Colwell, R.R.1
  • 11
    • 0030467103 scopus 로고    scopus 로고
    • Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies
    • Eardly B.D., Wang F.S., Vanberkum P. Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies. Plant Soil 1996, 186:69-74.
    • (1996) Plant Soil , vol.186 , pp. 69-74
    • Eardly, B.D.1    Wang, F.S.2    Vanberkum, P.3
  • 12
    • 15444377835 scopus 로고    scopus 로고
    • Rhizobial 16S rRNA and dnaK genes: mosaicism and the uncertain phylogenetic placement of Rhizobium galegae
    • Eardly B.D., Nour S.M., van Berkum P., Selander R.K. Rhizobial 16S rRNA and dnaK genes: mosaicism and the uncertain phylogenetic placement of Rhizobium galegae. Appl Environ Microbiol 2005, 71:1328-1335.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1328-1335
    • Eardly, B.D.1    Nour, S.M.2    van Berkum, P.3    Selander, R.K.4
  • 13
    • 0141592292 scopus 로고    scopus 로고
    • Agrobacterium is a definable genus of the family Rhizobiaceae
    • Farrand S.K., van Berkum P., Oger P. Agrobacterium is a definable genus of the family Rhizobiaceae. Int J Syst Evol Microbiol 2003, 53:1681-1687.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1681-1687
    • Farrand, S.K.1    van Berkum, P.2    Oger, P.3
  • 14
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher M.M., Triplett E.W. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 1999, 65:4630-4636.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 15
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox G.E., Wisotzkey J.D., Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Evol Microbiol 1992, 42:166-170.
    • (1992) Int J Syst Evol Microbiol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 18
    • 33744804299 scopus 로고    scopus 로고
    • Metagenomic analysis of the human distal gut microbiome
    • Gill S.R., Pop M., Deboy R.T., et al. Metagenomic analysis of the human distal gut microbiome. Science 2006, 312:1355-1359.
    • (2006) Science , vol.312 , pp. 1355-1359
    • Gill, S.R.1    Pop, M.2    Deboy, R.T.3
  • 19
    • 33846555715 scopus 로고    scopus 로고
    • DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
    • Goris J., Konstantinidis K.T., Klappenbach J.A., et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007, 57:81-91.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 81-91
    • Goris, J.1    Konstantinidis, K.T.2    Klappenbach, J.A.3
  • 20
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Gray J.P., Herwig R.P. Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 1996, 62:4049-4059.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 21
    • 33645464048 scopus 로고    scopus 로고
    • Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray
    • Gresham D., Ruderfer D.M., Pratt S.C., et al. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 2006, 311:1932-1936.
    • (2006) Science , vol.311 , pp. 1932-1936
    • Gresham, D.1    Ruderfer, D.M.2    Pratt, S.C.3
  • 22
    • 0023024708 scopus 로고
    • Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools
    • Grimont F., Grimont P.A. Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools. Annu Inst Pasteur Microbiol 1986, 137B:165-175.
    • (1986) Annu Inst Pasteur Microbiol , vol.137 , pp. 165-175
    • Grimont, F.1    Grimont, P.A.2
  • 23
    • 0026094568 scopus 로고
    • Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA
    • Gurtler V., Wilson V.A., Mayall B.C. Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA. J Gen Microbiol 1991, 137:2673-2679.
    • (1991) J Gen Microbiol , vol.137 , pp. 2673-2679
    • Gurtler, V.1    Wilson, V.A.2    Mayall, B.C.3
  • 24
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 2004, 68:669-685.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 27
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen P.H., Yates P.S., Grinton B.E., Taylor P.M., Sait M. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 2002, 68:2391-2396.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 28
    • 0027461618 scopus 로고
    • Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
    • Jensen M.A., Webster J.A., Straus N. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl Environ Microbiol 1993, 59:945-952.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 945-952
    • Jensen, M.A.1    Webster, J.A.2    Straus, N.3
  • 29
    • 13244267001 scopus 로고    scopus 로고
    • MlstdbNet-distributed multi-locus sequence typing (MLST) Databases
    • Jolley K.A., Chan M., Maiden M.C.J. mlstdbNet-distributed multi-locus sequence typing (MLST) Databases. BMC Bioinformatics 2004, 5:86.
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.2    Maiden, M.C.J.3
  • 30
    • 53649100100 scopus 로고    scopus 로고
    • The development and impact of 454 sequencing
    • Rothberg J.M., Leamon J.H. The development and impact of 454 sequencing. Nat Biotechnol 2008, 26:1117-1124.
    • (2008) Nat Biotechnol , vol.26 , pp. 1117-1124
    • Rothberg, J.M.1    Leamon, J.H.2
  • 31
    • 0034074410 scopus 로고    scopus 로고
    • RRNA operon copy number reflects ecological strategies of bacteria
    • Klappenbach J.A., Dunbar J.M., Schmidt T.M. rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol 2000, 66:1328-1333.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1328-1333
    • Klappenbach, J.A.1    Dunbar, J.M.2    Schmidt, T.M.3
  • 32
    • 40649125049 scopus 로고    scopus 로고
    • Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics
    • Koeppel A., Perry E.B., Sikorski J., et al. Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics. Proc Natl Acad Sci USA 2008, 105:2504-2509.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 2504-2509
    • Koeppel, A.1    Perry, E.B.2    Sikorski, J.3
  • 33
    • 14044262978 scopus 로고    scopus 로고
    • Genomic insights that advance the species definition for prokaryotes
    • Konstantinidis K.T., Tiedje J.M. Genomic insights that advance the species definition for prokaryotes. Proc Natl Acad Sci USA 2005, 102:2567-2572.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2567-2572
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 34
    • 24944587193 scopus 로고    scopus 로고
    • Towards a genome-based taxonomy for prokaryotes
    • Konstantinidis K.T., Tiedje J.M. Towards a genome-based taxonomy for prokaryotes. J Bacteriol 2005, 187:6258-6264.
    • (2005) J Bacteriol , vol.187 , pp. 6258-6264
    • Konstantinidis, K.T.1    Tiedje, J.M.2
  • 35
    • 39549114616 scopus 로고    scopus 로고
    • Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures
    • Korlach J., Marks P.J., Cicero R.L. Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures. Proc Natl Acad Sci USA 2008, 105:1176-1181.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 1176-1181
    • Korlach, J.1    Marks, P.J.2    Cicero, R.L.3
  • 37
    • 0029786831 scopus 로고    scopus 로고
    • Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism
    • Lee D., Zo Y., Kim S. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism. Appl Environ Microbiol 1996, 62:3112-3120.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3112-3120
    • Lee, D.1    Zo, Y.2    Kim, S.3
  • 38
    • 43049159541 scopus 로고    scopus 로고
    • Questionable 16S ribosomal RNA gene annotations are frequent in completed microbial genomes
    • Lin Y., Chang B.C.H., Chiang P., Tang S. Questionable 16S ribosomal RNA gene annotations are frequent in completed microbial genomes. Gene 2008, 416:44-47.
    • (2008) Gene , vol.416 , pp. 44-47
    • Lin, Y.1    Chang, B.C.H.2    Chiang, P.3    Tang, S.4
  • 39
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 1997, 63:4516-4522.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 40
    • 39149143961 scopus 로고    scopus 로고
    • Tracking microbial biodiversity through molecular and genomic ecology
    • Lopez-Garcia P., Moreira D. Tracking microbial biodiversity through molecular and genomic ecology. Res Microbiol 2008, 159:67-73.
    • (2008) Res Microbiol , vol.159 , pp. 67-73
    • Lopez-Garcia, P.1    Moreira, D.2
  • 41
    • 15444369528 scopus 로고    scopus 로고
    • 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"
    • Loy A., Schulz C., Lucker S., et al. 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Appl Environ Microbiol 2005, 71:1373-1386.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1373-1386
    • Loy, A.1    Schulz, C.2    Lucker, S.3
  • 42
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C., Hamady M., Knight R., et al. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 43
    • 0034965017 scopus 로고    scopus 로고
    • Population genetics of Helicobacter pylori in the southern part of Switzerland analysed by sequencing of four housekeeping genes (atpD, glnA, scoB and recA), and by vacA, cagA, iceA and IS605 genotyping
    • Maggi-Solca N., Bernasconi M.V., Valsangiacomo C., van Doom L.J., Piffaretti J.C. Population genetics of Helicobacter pylori in the southern part of Switzerland analysed by sequencing of four housekeeping genes (atpD, glnA, scoB and recA), and by vacA, cagA, iceA and IS605 genotyping. Microbiology 2001, 147:1693-1707.
    • (2001) Microbiology , vol.147 , pp. 1693-1707
    • Maggi-Solca, N.1    Bernasconi, M.V.2    Valsangiacomo, C.3    van Doom, L.J.4    Piffaretti, J.C.5
  • 45
    • 0033573165 scopus 로고    scopus 로고
    • In situ localized amplification and contact replication of many individual DNA molecules
    • Mitra R.D., Church G.M. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res 1999, 27:e34.
    • (1999) Nucleic Acids Res , vol.27
    • Mitra, R.D.1    Church, G.M.2
  • 46
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., Uitierlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993, 59:695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitierlinden, A.G.3
  • 47
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni M.A., Martin F.E., Jacques N.A., Hunter N. Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 2002, 148:257-266.
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 48
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nubel U., Engelen B., Felske A., et al. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 1996, 178:5636-5643.
    • (1996) J Bacteriol , vol.178 , pp. 5636-5643
    • Nubel, U.1    Engelen, B.2    Felske, A.3
  • 49
    • 2542509415 scopus 로고    scopus 로고
    • Quantifying microbial diversity: morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats
    • Nubel U., Garcia-Pichel F., Kuhl M., Muyzer G. Quantifying microbial diversity: morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats. Appl Environ Microbiol 1999, 65:422-430.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 422-430
    • Nubel, U.1    Garcia-Pichel, F.2    Kuhl, M.3    Muyzer, G.4
  • 50
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data
    • Palys T., Nakamura L.K., Cohan F.M. Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int J Syst Evol Microbiol 1997, 47:1145-1156.
    • (1997) Int J Syst Evol Microbiol , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 51
    • 22144466242 scopus 로고    scopus 로고
    • Development of a recA gene-based identification approach for the entire Burkholderia genus
    • Payne G.W., Vandamme P., Morgan S.H., et al. Development of a recA gene-based identification approach for the entire Burkholderia genus. Appl Environ Microbiol 2005, 71:3917-3927.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3917-3927
    • Payne, G.W.1    Vandamme, P.2    Morgan, S.H.3
  • 52
    • 53149111487 scopus 로고    scopus 로고
    • Strategies for accessing soil metagenome for desired applications
    • Rajendhran J., Gunasekaran P. Strategies for accessing soil metagenome for desired applications. Biotechnol Adv 2008, 26:576-590.
    • (2008) Biotechnol Adv , vol.26 , pp. 576-590
    • Rajendhran, J.1    Gunasekaran, P.2
  • 53
    • 44449135469 scopus 로고    scopus 로고
    • Assessment of microbial diversity in effluent treatment plants by culture dependent and culture independent approaches
    • Rani A., Porwal S., Sharma R., Kapley A., Purohit H.J., Kalia V.C. Assessment of microbial diversity in effluent treatment plants by culture dependent and culture independent approaches. Biores Technol 2008, 99:7098-7107.
    • (2008) Biores Technol , vol.99 , pp. 7098-7107
    • Rani, A.1    Porwal, S.2    Sharma, R.3    Kapley, A.4    Purohit, H.J.5    Kalia, V.C.6
  • 54
    • 0037176217 scopus 로고    scopus 로고
    • Pyrosequencing for microbial typing
    • Ronaghi M., Elahi E. Pyrosequencing for microbial typing. J Chromatogr B 2002, 782:67-72.
    • (2002) J Chromatogr B , vol.782 , pp. 67-72
    • Ronaghi, M.1    Elahi, E.2
  • 56
    • 33750078701 scopus 로고    scopus 로고
    • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures
    • Schloss P.D., Handelsman J. Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol 2006, 72:6773-6779.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6773-6779
    • Schloss, P.D.1    Handelsman, J.2
  • 57
    • 0344666688 scopus 로고    scopus 로고
    • Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group
    • Schouls L.M., Schot C.S., Jacobs J.A. Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group. J Bacteriol 2003, 185:7241-7246.
    • (2003) J Bacteriol , vol.185 , pp. 7241-7246
    • Schouls, L.M.1    Schot, C.S.2    Jacobs, J.A.3
  • 58
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J., Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26:1135-1145.
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 60
    • 0034932267 scopus 로고    scopus 로고
    • PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods
    • Stach J.E.M., Bathe S., Clapp J.P., Burns R.G. PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods. FEMS Microbiol Ecol 2001, 36:139-151.
    • (2001) FEMS Microbiol Ecol , vol.36 , pp. 139-151
    • Stach, J.E.M.1    Bathe, S.2    Clapp, J.P.3    Burns, R.G.4
  • 61
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 1994, 44:846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 62
    • 84920629237 scopus 로고    scopus 로고
    • A renaissance for the pioneering 16S rRNA gene
    • Tringe S.G., Hugenholtz P. A renaissance for the pioneering 16S rRNA gene. Curr Opin Microbiol 2008, 11:442-446.
    • (2008) Curr Opin Microbiol , vol.11 , pp. 442-446
    • Tringe, S.G.1    Hugenholtz, P.2
  • 64
    • 0028343191 scopus 로고
    • Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons
    • Viale A.M., Arakaki A.K., Soncini F.C., Ferreyra R.G. Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons. Int J Syst Bacteriol 1994, 44:527-533.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 527-533
    • Viale, A.M.1    Arakaki, A.K.2    Soncini, F.C.3    Ferreyra, R.G.4
  • 65
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang Y., Zhang Z., Ramanan N. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J Bacteriol 1997, 179:3270-3276.
    • (1997) J Bacteriol , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.2    Ramanan, N.3
  • 66
    • 2342463530 scopus 로고    scopus 로고
    • Novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro
    • Wang Y., Prosen D.E., Mei L., Sullivan J.C., Finney M., Horn PBV.A. novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro. Nucleic Acids Res 2004, 32:1197-1207.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1197-1207
    • Wang, Y.1    Prosen, D.E.2    Mei, L.3    Sullivan, J.C.4    Finney, M.5    Horn, P.B.V.A.6
  • 67
    • 0035167764 scopus 로고    scopus 로고
    • ICB database: the gyrB database for identification and classification of bacteria
    • Watanabe K., Nelson J., Harayama S., Kasai H. ICB database: the gyrB database for identification and classification of bacteria. Nucleic Acids Res 2001, 29:344-345.
    • (2001) Nucleic Acids Res , vol.29 , pp. 344-345
    • Watanabe, K.1    Nelson, J.2    Harayama, S.3    Kasai, H.4
  • 68
    • 0000770675 scopus 로고
    • Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Wayne L.G., Brenner D.J., Colwell R.R., et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987, 37:463-464.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3
  • 69
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. Bacterial evolution. Microbiol Rev 1987, 51:221-271.
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 70
    • 0035151030 scopus 로고    scopus 로고
    • A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn, 1942 and Allorhizobium undicola de Lajudie et al., 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis
    • Young J.M., Kuykendall L.D., Martinez-Romero E., Kerr A., Sawada H. A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn, 1942 and Allorhizobium undicola de Lajudie et al., 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis. Int J Syst Evol Microbiol 2001, 51:89-103.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 89-103
    • Young, J.M.1    Kuykendall, L.D.2    Martinez-Romero, E.3    Kerr, A.4    Sawada, H.5


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