Salinity-induced changes in protein expression in the halophytic plant Nitraria sphaerocarpa

Journal of Proteomics

Volumn 75, Issue 17, 2012, Pages 5226-5243

  Chen, Jinhui ^a   Cheng, Tielong ^b   Wang, Pengkai ^a   Liu, Weidong ^a   Xiao, Jiao ^a   Yang, Yunqiang ^c   Hu, Xiangyang ^c   Jiang, Zeping ^b   Zhang, Shougong ^b   Shi, Jisen ^a  

^a NANJING FORESTRY UNIVERSITY   (China)

^b RESEARCH INSTITUTE OF FORESTRY   (China)

^c KUNMING INSTITUTE OF BOTANY   (China)

Author keywords

Cell suspension; Comparative proteomics; Nitraria sphaerocarpa; Salinity stress

Indexed keywords

SODIUM CHLORIDE; VEGETABLE PROTEIN;

ANTIOXIDANT ACTIVITY; ARTICLE; CELL CYCLE; CELL CYCLE REGULATION; CELL SUSPENSION; CYTOSKELETON; DATA BASE; GENE EXPRESSION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NITRARIA SPHAEROCARPA; PHENOTYPE; PLANT CELL; PLANT RESPONSE; PLANT TISSUE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN SYNTHESIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALINITY; SALT STRESS; SIGNAL TRANSDUCTION; TWO DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS; ZYGOPHYLLACEAE;

ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; MICROARRAY ANALYSIS; MODELS, BIOLOGICAL; PLANT PROTEINS; PROTEOME; PROTEOMICS; SALINITY; SALT-TOLERANT PLANTS; SODIUM CHLORIDE; STRESS, PHYSIOLOGICAL; TANDEM MASS SPECTROMETRY; ZYGOPHYLLACEAE;

NITRARIA SPHAEROCARPA;

EID: 84865545370     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.06.006     Document Type: Article

References (61)

1. Rhoades J., Loveday J. Salinity in irrigated agriculture. In salinity in irrigated agriculture 1990, 1089-1142. American Society of Agronomists, Madison, WI. J.D. Rhodaes, J. Loveday (Eds.).
2. Munns R. Comparative physiology of salt and water stress. Plant Cell Environ 2002, 25:239-250.
3. Kader M.A., Lindberg S. Cellular traits for sodium tolerance in rice (Oryza sativa L.). Plant Biotechnol 2008, 25:247-255.
4. Hasegawa P.M., Bressan R.A., Zhu J.K., Bohnert H.J. Plant cellular and molecular responses to high salinity. Annu Rev Plant Biol 2000, 51:463-499.
5. Zhu J.K. Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 2002, 53:247.
6. Zhu JK. Plant salt stress. In: John Wiley & Sons, editor. Encyclopedia of Life Sciences, 2007, p. 1-3.
7. Zhu J.K. Plant salt tolerance. Trends Plant Sci 2001, 6:66-71.
8. Glenn E.P., Brown J., Khan M.J. Mechanisms of salt tolerance in higher plants. Mechanism of environmental stress resistance in plants 1997, 83-110. Harwood Academic, The Netherlands. A. Basra (Ed.).
9. Munns R., James R.A., Läuchli A. Approaches to increasing the salt tolerance of wheat and other cereals. J Exp Bot 2006, 57:1025.
10. Miller G., Schlauch K., Tam R., Cortes D., Torres M., Shulaev V., et al. The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci Signal 2009, 2:45.
11. Xiong L., Zhu J.K. Molecular and genetic aspects of plant responses to osmotic stress. Plant Cell Environ 2002, 25:131-139.
12. Roy P., Niyogi K., SenGupta D., Ghosh B. Spermidine treatment to rice seedlings recovers salinity stress-induced damage of plasma membrane and PM-bound H+-ATPase in salt-tolerant and salt-sensitive rice cultivars. Plant Sci 2005, 168:583-591.
13. Chen J.H., Tian L., Xu H.F., Tian D.G., Luo Y.M., Ren C.M., et al. Cold-induced changes of protein and phosphoprotein expression patterns from rice roots as revealed by multiplex proteomic analysis. Plant Omics. 2012, 5:194-199.
14. Wang X.S., Han J.G. Changes of proline content, activity, and active isoforms of antioxidative enzymes in two alfalfa cultivars under salt stress. Agr Sci China 2009, 8:431-440.
15. Ahmad R., Kim Y.H., Kim M.D., Kwon S.Y., Cho K., Lee H.S., et al. Simultaneous expression of choline oxidase, superoxide dismutase and ascorbate peroxidase in potato plant chloroplasts provides synergistically enhanced protection against various abiotic stresses. Physiol Plant 2010, 138:520-533.
16. Qi Y., Liu W., Qiu L., Zhang S., Ma L., Zhang H. Overexpression of glutathione S-transferase gene increases salt tolerance of Arabidopsis. Russ J Plant Physiol 2010, 57:233-240.
17. Valentovicova K., Huttova J., Mistrik I., Tamas L. Effect of abiotic stresses on glutathione peroxidase and glutathione S-transferase activity in barley root tips. Plant Physiol Biochem 2009, 47:1069-1074.
18. Flowers T.J., Colmer T.D. Salinity tolerance in halophytes. New Phytol 2008, 179:945-963.
19. Sobhanian H., Aghaei K., Komatsu S. Changes in the plant proteome resulting from salt stress: toward the creation of salt-tolerant crops?. J Proteomics 2011, 74:1323-1337.
20. Sobhanian H., Motamed N., Jazii F.R., Nakamura T., Komatsu S. Salt stress induced differential proteome and metabolome response in the shoots of Aeluropus lagopoides (Poaceae), a halophyte C4 plant. J Proteome Res 2010, 9:2882-2897.
21. May M.J., Leaver C.J. Oxidative stimulation of glutathione synthesis in Arabidopsis thaliana suspension cultures. Plant Physiol 1993, 103:621-627.
22. Bru R., Sellés S., Casado-Vela J., Belchí-Navarro S., Pedreño M.A. Modified cyclodextrins are chemically defined glucan inducers of defense responses in grapevine cell cultures. J Agric Food Chem 2006, 54:65-71.
23. Towill L.E., Mazur P. Studies on the reduction of 2, 3, 5-triphenyltetrazolium chloride as a viability assay for plant tissue cultures. Can J Bot 1975, 53:1097-1102.
24. Yang L., Luo Y., Wei J., Ren C., Zhou X., He S. Methods for protein identification using expressed sequence tags and peptide mass fingerprinting for seed crops without complete genome sequences. Seed Sci Res 2010, 20:257-262.
25. Yang L., Tian D., Luo Y., Zhang R., Ren C., Zhou X. Proteomics-based identification of storage, metabolic, and allergenic proteins in wheat seed from 2-DE gels. Afr J Agric Res 2011, 6:808-816.
26. Bateman A., Birney E., Cerruti L., Durbin R., Etwiller L., Eddy S.R., et al. The Pfam protein families database. Nucleic Acids Res 2002, 30:276.
27. Apweiler R., Attwood T.K., Bairoch A., Bateman A., Birney E., Biswas M., et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 2001, 29:37-40.
28. Bancroft I., Bent E., Love K., Goodman H., Dean C., Bergkamp R., et al. Analysis of 1.9Mb of contiguous sequence from chromosome 4. Nature 1998, 391:485-488.
29. Sharov A.A., Dudekula D.B., Ko M.S.H. A web-based tool for principal component and significance analysis of microarray data. Bioinformatics 2005, 21:2548-2549.
30. Askari H., Edqvist J., Hajheidari M., Kafi M., Salekdeh G.H. Effects of salinity levels on proteome of Suaeda aegyptiaca leaves. Proteomics 2006, 6:2542-2554.
31. Coursol S., Fan L.M., Stunff H.L., Spiegel S., Gilroy S., Assmann S.M. Sphingolipid signalling in Arabidopsis guard cells involves heterotrimeric G proteins. Nature 2003, 423:651-654.
32. Trusov Y., Rookes J.E., Chakravorty D., Armour D., Schenk P.M., Botella J.R. Heterotrimeric G proteins facilitate Arabidopsis resistance to necrotrophic pathogens and are involved in jasmonate signaling. Plant Physiol 2006, 140:210.
33. Luan S. Protein phosphatases and signaling cascades in higher plants. Trends Plant Sci 1998, 3:271-275.
34. Morris E.R., Walker J.C. Receptor-like protein kinases: the keys to response. Curr Opin Plant Biol 2003, 6:339-342.
35. Shiu S.H., Bleecker A.B. Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001, 113:1-13.
36. He Z.H., He D., Kohorn B.D. Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. Plant J 1998, 14:55-63.
37. Cosgrove D.J. Plant cell walls: wall-associated kinases and cell expansion. Curr Biol 2001, 11:R558-R559.
38. Decreux A., Messiaen J. Wall-associated kinase WAK1 interacts with cell wall pectins in a calcium-induced conformation. Plant Cell Physiol 2005, 46:268-278.
39. He Z.H., Cheeseman I., He D., Kohorn B.D. A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis. Plant Mol Biol 1999, 39:1189-1196.
40. Sivaguru M., Ezaki B., He Z.H., Tong H., Osawa H., Baluska F., et al. Aluminum-induced gene expression and protein localization of a cell wall-associated receptor kinase in Arabidopsis. Plant Physiol 2003, 132:2256-2266.
41. Wagner T.A., Kohorn B.D. Wall-associated kinases are expressed throughout plant development and are required for cell expansion. Plant Cell 2001, 13:303-318.
42. Knight H., Trewavas A.J., Knight M.R. Calcium signalling in Arabidopsis thaliana responding to drought and salinity. Plant J 1997, 12:1067-1078.
43. Sheen J. Ca2+-dependent protein kinases and stress signal transduction in plants. Science 1996, 274:1900.
44. Brini F., Hanin M., Lumbreras V., Amara I., Khoudi H., Hassairi A., et al. Overexpression of wheat dehydrin DHN-5 enhances tolerance to salt and osmotic stress in Arabidopsis thaliana. Plant Cell Rep 2007, 26:2017-2026.
45. Saavedra L., Svensson J., Carballo V., Izmendi D., Welin B., Vidal S. A dehydrin gene in Physcomitrella patens is required for salt and osmotic stress tolerance. Plant J 2006, 45:237-249.
46. Dixon D.P., Davis B.G., Edwards R. Functional divergence in the glutathione transferase superfamily in plants. J Biol Chem 2002, 277:30859.
47. Seki M., Narusaka M., Abe H., Kasuga M., Yamaguchi-Shinozaki K., Carninci P., et al. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 2001, 13:61-72.
48. Seki M., Narusaka M., Ishida J., Nanjo T., Fujita M., Oono Y., et al. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 2002, 31:279-292.
49. Vieira Dos Santos C., Rey P. Plant thioredoxins are key actors in the oxidative stress response. Trends Plant Sci 2006, 11:329-334.
50. Dixon D.P., Lapthorn A., Edwards R. Plant glutathione transferases. Genome Biol 2002, 3:1-10.
51. Kobayashi M., Ishizuka T., Katayama M., Kanehisa M., Bhattacharyya-Pakrasi M., Pakrasi H.B., et al. Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol 2004, 45:290.
52. Ndimba B.K., Chivasa S., Simon W.J., Slabas A.R. Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics 2005, 5:4185-4196.
53. Peng Z., Wang M., Li F., Lv H., Li C., Xia G. A proteomic study of the response to salinity and drought stress in an introgression strain of bread wheat. Mol Cell Proteomics 2009, 8:2676-2686.
54. Kerepesi I., Galiba G. Osmotic and salt stress-induced alteration in soluble carbohydrate content in wheat seedlings. Crop Sci 2000, 40:482-487.
55. Gupta D., Tuteja N. Chaperones and foldases in endoplasmic reticulum stress signaling in plants. Plant Signal Behav 2011, 6:232.
56. Tiroli-Cepeda A.O., Ramos C.H.I. An overview of the role of molecular chaperones in protein homeostasis. Protein Pept Lett 2011, 18:101-109.
57. Liu Y., Du H., He X., Huang B., Wang Z. Identification of differentially expressed salt-responsive proteins in roots of two perennial grass species contrasting in salinity tolerance. J Plant Physiol 2011.
58. Horwich A.L., Fenton W.A. Chaperonin-mediated protein folding: using a central cavity to kinetically assist polypeptide chain folding. Q Rev Biophys 2009, 42:83-116.
59. Johnson J.L. Evolution and function of diverse Hsp90 homologs and cochaperone proteins. Biochim Biophys Acta 2012, 1823:607-613.
60. Kettern N., Dreiseidler M., Tawo R., Höhfeld J. Chaperone-assisted degradation: multiple paths to destruction. J Biol Chem 2010, 391:481-489.
61. Lyzenga W.J., Stone S.L. Abiotic stress tolerance mediated by protein ubiquitination. J Exp Bot 2011, 63:599-616.