13C relaxation and dynamics of the purine bases in the iron responsive element RNA hairpin

Biochemistry

Volumn 37, Issue 26, 1998, Pages 9323-9332

  Hall, Kathleen B ^a   Tang, Changguo ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IRON; PURINE; RNA; CARBON; FERRITIN; HETERODUPLEX; IRON REGULATORY FACTOR; IRON SULFUR PROTEIN; PURINE NUCLEOTIDE; RNA BINDING PROTEIN;

ARTICLE; COMPUTER SIMULATION; HYDROGEN BOND; IRON RESPONSIVE ELEMENT; METAL BINDING; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; REACTION ANALYSIS; RNA ANALYSIS; TEMPERATURE MEASUREMENT; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DNA BASE COMPOSITION; THERMODYNAMICS;

BASE COMPOSITION; CARBON ISOTOPES; FERRITINS; IRON-REGULATORY PROTEINS; IRON-SULFUR PROTEINS; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; PURINE NUCLEOTIDES; RNA; RNA-BINDING PROTEINS; THERMODYNAMICS;

EID: 0032580790     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9805285     Document Type: Article

References (45)

1. Casey, J. L., Hentze, M. W., Koeller, D. M., Caughman, S. W., Roualt, T. A., Klausner, R. D., and Harford, J. B. (1988) Science 240, 924.
2. Gray, N. K., and Hentze, M. W. (1994) EMBO J. 13, 3882.
3. Laing, L. G., and Hall, K. B. (1996) Biochemistry 35, 13586.
4. King, G. C., Xi, Z., Michnicka, M. J., and Akratos, C. (1995) in Stable Isotope Applications in Biomolecular Struct & Mechanisms, pp 145-154, Los Alamos National Laboratory, Los Alamos, NM.
5. Akke, M., Fiala, R., Jiang, F., Patel, D., and Palmer, A. G. (1997) RNA 3, 702.
6. Kay, L. E., Torchia, D. A., and Bax, A. (1989) Biochemistry 28, 8972.
7. Nicholson, L. K., Yamazaki, T., Torchia, D., Grzeisiek, S., Bax, A., Stahl, S., Kaufman, J. D., Wingfield, P. T., Lam, P. Y. S., Jadhav, P. K., Hodge, C. N., Domaille, P. J., and Chang, C.-H. (1995) Nat. Struct. Biol. 2, 274.
8. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1995) Biochemistry 34, 868.
9. Stone, M. J., Fairbrother, W. J., Palmer, A. G., III, Reizer, J., Saier, M. H., and Wright, P. E. (1992) Biochemistry 31, 4394.
10. Weaver, A. J., Kemple, M. D., and Prendergast, F. G. (1989) Biochemistry 28, 8624.
11. Wand, A. J., Urbauer, J. L., McEvoy, R. P., and Bieber, R. J. (1996) Biochemistry 35, 6116.
12. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4546.
13. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4559.
14. Peng, J. W., and Wagner, G. (1992) J. Magn. Reson. 98, 308.
15. Dayie, K. T., Wagner, G., and Lefevre, J. F. (1996) Annu. Rev. Phys. Chem. 47, 243.
16. Dellwo, M. J., and Wand, A. J. (1989) J. Am. Chem. Soc. 111, 4571.
17. Borer, P. N., LaPlante, S. R., Kumar, A., Zanatta, N., Martin, A., Hakkinen, A., and Levy, G. C. (1994) Biochemistry 33, 2441.
18. Gaudin, F., Paquet, F., Chanteloup, L., Beau, J.-M., Thuong, N. T., and Lancelot, G. (1995) J. Biomol. NMR 5, 49.
19. Williamson, J., and Boxer, S. (1989) Biochemistry 28, 2819.
20. Zichi, D. A. (1995) J. Am. Chem. Soc. 117, 295.
21. Miller, J. L., and Kollman, P. A. (1997) J. Mol. Biol. 270, 436.
22. Cheatham, T. E., and Kollman, P. A. (1997) J. Am. Chem. Soc. 119, 4805.
23. Auffinger, P., and Westhof, E. (1997) J. Mol. Biol. 269, 326.
24. Kemple, M. D., Yuan, P., Nollet, K. E., Fuchs, J. A., Silva, N., and Prendergast, F. G. (1994) Biophys. J. 66, 2111.
25. Daragon, V. A., and Mayo, K. H. (1998) J. Biomol. NMR 130, 329.
26. London, R. E., and Avitabile, J. (1978) J. Am. Chem. Soc. 100, 7159.
27. Lipari, G., and Szabo, A. (1980) Biophys. J. 30, 489.
28. Brainard, J. R., and Szabo, A. (1981) Biochemistry 20, 4618.
29. Nikonowicz, E. P., Sirr, A., Legault, P., Jucker, F. M., Baer, L. M., and Pardi, A. (1992) Nucleic Acids Res. 20, 4507.
30. Yamazaki, T., Muhandiram, R., and Kay, L. E. (1994) J. Am. Chem. Soc. 116, 8266.
31. Shaka, A. J., Barker, P. B., and Freeman, R. (1985) J. Magn. Reson. 64, 547.
32. States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982) J. Magn. Reson. 48, 286.
33. Abragam, A. (1961) Principles of nuclear magnetism, Oxford University Press, Oxford, U.K.
34. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989.
35. Press, W. H., Teukolsky, S. A., Vetterling, W. T., and Flannery, B. P. (1988) Numerical recipes in C, 2nd ed., Cambridge University Press, Cambridge, U.K.
36. Bruschweiler, R., and Wright, P. E. (1994) J. Am. Chem. Soc. 116, 8426.
37. Roussel, A., and Cambillau, C. (1991) in TURBO-FRODO in Silicon Graphics Partners Directory 86, Silicon Graphics, Mountain View, CA.
38. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., III, and Skelton, N. J. (1996) Protein NMR Spectroscopy: Principles and practice, Academic Press, San Diego.
39. Deverell, C., Morgan, R. E., and Strange, J. H. (1970) Mol. Phys. 18, 553.
40. Lane, A. N., and Lefevre, J.-F. (1994) Methods Enzymol. 239, 596.
41. Briki, F., Ramstein, J., Lavery, R., and Genest, D. (1991) J. Am. Chem. Soc. 113, 2490-2493.
42. Addess, K. J., Basilion, J. P., Klausner, R. D., Rouault, T. A., and Pardi, A. (1997) J. Mol. Biol. 274, 72.
43. Wittebort, R. J., and Szabo, A. (1978) J. Chem. Phys. 69, 1722.
44. Schweitzer, B. I., Gardner, K. H., and Tucker-Kellogg, G. (1995) J. Biomol. NMR 6, 180.
45. Palmer, A. G., III, and Case, D. A. (1992) J. Am. Chem. Soc. 114, 9059.