Measuring genome-wide nucleosome turnover using CATCH-IT

Methods in Enzymology

Volumn 513, Issue , 2012, Pages 169-184

  Teves, Sheila S ^a,b   Deal, Roger B ^a   Henikoff, Steven ^a,c  

^a Fred Hutchinson Cancer Research Center   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Chromatin mapping; Illumina paired end library; Nucleosome dynamics

Indexed keywords

BIOTIN; DNA; DNA BINDING PROTEIN; EDETIC ACID; GLUCOSE; GLYCOGEN; METHIONINE; STREPTAVIDIN;

ARTICLE; BINDING AFFINITY; CELL METABOLISM; CHROMATIN; COVALENT BOND; DNA ISOLATION; DNA LIBRARY; DNA SEQUENCE; GENETIC ASSOCIATION; INSECT CELL; MOLECULAR DYNAMICS; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN METABOLISM;

EID: 84865461059     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-391938-0.00007-0     Document Type: Chapter

References (11)

1. D.R. Bentley Whole-genome re-sequencing Current Opinion in Genetics and Development 16 2006 545 552
2. R.B. Deal, J.G. Henikoff, and S. Henikoff Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones Science 328 2010 1161 1164
3. J.G. Henikoff, J.A. Belsky, K. Krassovsky, D.M. Macalpine, and S. Henikoff Epigenome characterization at single base-pair resolution Proceedings of the National Academy of Sciences of the United States of America 108 2011 18318 18323
4. S. Henikoff, J.G. Henikoff, A. Sakai, G.B. Loeb, and K. Ahmad Genome-wide profiling of salt fractions maps physical properties of chromatin Genome Research 19 2009 460 469
5. N.A. Kent, S. Adams, A. Moorhouse, and K. Paszkiewicz Chromatin particle spectrum analysis: A method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing Nucleic Acids Research 39 2011 e26
6. M.J. Lopez-Barragan, M. Quinones, K. Cui, J. Lemieux, K. Zhao, and X.Z. Su Effect of PCR extension temperature on high-throughput sequencing Molecular and Biochemical Parasitology 176 2010 64 67
7. M.A. Quail, I. Kozarewa, F. Smith, A. Scally, P.J. Stephens, and R. Durbin A large genome center's improvements to the Illumina sequencing system Nature Methods 5 2008 1005 1010
8. A. Rufiange, P.E. Jacques, W. Bhat, F. Robert, and A. Nourani Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1 Molecular Cell 27 2007 393 405
9. S.S. Teves, and S. Henikoff Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide Genes & Development 25 2011 2387 2397
10. C. Thiriet, and J.J. Hayes Replication-independent core histone dynamics at transcriptionally active loci in vivo Genes & Development 19 2005 677 682
11. C.M. Weber, J.G. Henikoff, and S. Henikoff H2A.Z nucleosomes enriched over active genes are homotypic Nature Structural and Molecular Biology 17 2010 1500 1507