메뉴 건너뛰기




Volumn 176, Issue 1, 2011, Pages 64-67

Effect of PCR extension temperature on high-throughput sequencing

Author keywords

Amplification bias; Genome; Malaria; New generation sequencing; Nucleosome

Indexed keywords

ARTICLE; COPY NUMBER VARIATION; GENE AMPLIFICATION; GENE EXPRESSION; GENE SEQUENCE; GENOME; NONHUMAN; NUCLEOSOME; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TEMPERATURE;

EID: 78951476270     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2010.11.013     Document Type: Article
Times cited : (18)

References (18)
  • 2
    • 33748591589 scopus 로고    scopus 로고
    • Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
    • R. Pinard, A. de Winter, and G.J. Sarkis Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing BMC Genomics 7 2006 216
    • (2006) BMC Genomics , vol.7 , pp. 216
    • Pinard, R.1    De Winter, A.2    Sarkis, G.J.3
  • 3
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • J.C. Dohm, C. Lottaz, T. Borodina, and H. Himmelbauer Substantial biases in ultra-short read data sets from high-throughput DNA sequencing Nucleic Acids Res 36 2008 e105
    • (2008) Nucleic Acids Res , vol.36 , pp. 105
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 4
    • 48349105094 scopus 로고    scopus 로고
    • Impact of whole genome amplification on analysis of copy number variants
    • T.J. Pugh, A.D. Delaney, and N. Farnoud Impact of whole genome amplification on analysis of copy number variants Nucleic Acids Res 36 2008 e80
    • (2008) Nucleic Acids Res , vol.36 , pp. 80
    • Pugh, T.J.1    Delaney, A.D.2    Farnoud, N.3
  • 5
    • 77449147610 scopus 로고    scopus 로고
    • Frt-seq: Amplification-free, strand-specific transcriptome sequencing
    • L. Mamanova, R.M. Andrews, and K.D. James Frt-seq: amplification-free, strand-specific transcriptome sequencing Nat Methods 7 2010 130 132
    • (2010) Nat Methods , vol.7 , pp. 130-132
    • Mamanova, L.1    Andrews, R.M.2    James, K.D.3
  • 6
    • 41749104588 scopus 로고    scopus 로고
    • Single-molecule DNA sequencing of a viral genome
    • T.D. Harris, P.R. Buzby, and H. Babcock Single-molecule DNA sequencing of a viral genome Science 320 2008 106 109
    • (2008) Science , vol.320 , pp. 106-109
    • Harris, T.D.1    Buzby, P.R.2    Babcock, H.3
  • 7
    • 63949083912 scopus 로고    scopus 로고
    • Amplification-free illumina sequencing-library preparation facilitates improved mapping and assembly of (g + c)-biased genomes
    • I. Kozarewa, Z. Ning, and M.A. Quail Amplification-free illumina sequencing-library preparation facilitates improved mapping and assembly of (g + c)-biased genomes Nat Methods 6 2009 291 295
    • (2009) Nat Methods , vol.6 , pp. 291-295
    • Kozarewa, I.1    Ning, Z.2    Quail, M.A.3
  • 8
    • 0037015614 scopus 로고    scopus 로고
    • Genome sequence of the human malaria parasite plasmodium falciparum
    • M.J. Gardner, N. Hall, and E. Fung Genome sequence of the human malaria parasite plasmodium falciparum Nature 419 2002 498 511
    • (2002) Nature , vol.419 , pp. 498-511
    • Gardner, M.J.1    Hall, N.2    Fung, E.3
  • 9
    • 41649113803 scopus 로고    scopus 로고
    • Analysis of sequence variability in the macronuclear DNA of paramecium tetraurelia: A somatic view of the germline
    • L. Duret, J. Cohen, and C. Jubin Analysis of sequence variability in the macronuclear DNA of paramecium tetraurelia: a somatic view of the germline Genome Res 18 2008 585 596
    • (2008) Genome Res , vol.18 , pp. 585-596
    • Duret, L.1    Cohen, J.2    Jubin, C.3
  • 10
    • 0029873641 scopus 로고    scopus 로고
    • Reduced extension temperatures required for PCR amplification of extremely A + T-rich DNA
    • X-z Su, Y. Wu, C.D. Sifri, and T.E. Wellems Reduced extension temperatures required for PCR amplification of extremely A + T-rich DNA Nucleic Acids Res 24 1996 1574 1575
    • (1996) Nucleic Acids Res , vol.24 , pp. 1574-1575
    • S, X.-Z.1    Wu, Y.2    Sifri, C.D.3    Wellems, T.E.4
  • 11
    • 0017311840 scopus 로고
    • Human malaria parasites in continuous culture
    • W. Trager, and J.B. Jensen Human malaria parasites in continuous culture Science 193 1976 673 675
    • (1976) Science , vol.193 , pp. 673-675
    • Trager, W.1    Jensen, J.B.2
  • 12
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • A. Barski, S. Cuddapah, and K. Cui High-resolution profiling of histone methylations in the human genome Cell 129 2007 823 837
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3
  • 13
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol 10 2009 R25
    • (2009) Genome Biol , vol.10 , pp. 25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 14
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and Samtools
    • H. Li, B. Handsaker, and A. Wysoker The sequence alignment/map format and Samtools Bioinformatics 25 2009 2078 2079
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 15
    • 0034201441 scopus 로고    scopus 로고
    • Emboss: The european molecular biology open software suite
    • P. Rice, I. Longden, and A. Bleasby Emboss: the european molecular biology open software suite Trends Genet 16 2000 276 277
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 16
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • A.R. Quinlan, and I.M. Hall BEDTools: a flexible suite of utilities for comparing genomic features Bioinformatics 26 2010 841 842
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 17
    • 75649102519 scopus 로고    scopus 로고
    • Nucleosome landscape and control of transcription in the human malaria parasite
    • N. Ponts, E.Y. Harris, and J. Prudhomme Nucleosome landscape and control of transcription in the human malaria parasite Genome Res 20 2010 228 238
    • (2010) Genome Res , vol.20 , pp. 228-238
    • Ponts, N.1    Harris, E.Y.2    Prudhomme, J.3
  • 18
    • 0029070914 scopus 로고
    • The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of plasmodium falciparum-infected erythrocytes
    • X.-z. Su, V.M. Heatwole, and S.P. Wertheimer The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of plasmodium falciparum-infected erythrocytes Cell 82 1995 89 100
    • (1995) Cell , vol.82 , pp. 89-100
    • X, -Z.S.1    Heatwole, V.M.2    Wertheimer, S.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.