Mapping single-locus and epistatic quantitative trait loci for plant architectural traits in chrysanthemum

Molecular Breeding

Volumn 30, Issue 2, 2012, Pages 1027-1036

  Zhang, Fei ^a,b   Jiang, Jiafu ^a   Chen, Sumei ^a   Chen, Fadi ^a   Fang, Weimin ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

Author keywords

Chrysanthemum; Epistatic QTL; Plant architecture; QTL mapping

Indexed keywords

ARCHITECTURE; MAPPING; PLANTS (BOTANY);

ARCHITECTURAL TRAITS; CHRYSANTHEMUM; EPISTATIC QUANTITATIVE TRAIT LOCUS; GENETIC BASIS; GROUND COVERS; PHENOTYPIC VARIATIONS; PLANT ARCHITECTURE; PLANT HEIGHT; QUANTITATIVE TRAIT LOCI MAPPINGS; QUANTITATIVE TRAIT LOCUS;

CULTIVATION;

CHRYSANTHEMUM;

EID: 84865439179     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9686-3     Document Type: Article

References (50)

1. Abe H, Nakano M, Nakatsuka A, Nakayama M, Koshioka M, Yamagishi M (2002) Genetic analysis of floral anthocyanin pigmentation traits in Asiatic hybrid lily using molecular linkage maps. Theor Appl Genet 105: 1175-1182.
2. Blas AL, Yu Q, Veatch QJ, Paull RE, Moore PH, Ming R (2011) Genetic mapping of quantitative trait loci controlling fruit size and shape in papaya. Mol Breed. doi: 10. 1007/s11032-011-9562-1.
3. Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfem JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigei D, Chory J (2002) Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics 160: 683-696.
4. Carlborg O, Haley CS (2004) Epistasis: too often neglected in complex trait studies. Nat Rev Genet 5: 618-625.
5. Cilas C, Bar-Hen A, Montagnon C, Godin C (2006) Definition of architectural ideotypes for good yield capacity in coffee Canephor. Ann Bot 97: 405-411.
6. Dugo ML, Satovic Z, Millan T, Cubero JI (2005) Genetic mapping of QTLs controlling horticultural traits in diploid roses. Theor Appl Genet 111: 511-520.
7. Dunemann F, Kahnau R, Stange I (1999) Analysis of complex leaf and flower characters in Rhododendron using a molecular linkage map. Theor Appl Genet 98: 1146-1155.
8. Falconer DS, Machay TFC (1996) Introduction to quantitative genetics, 4th edn. Longmans Green, Harlow, pp 1-90.
9. He XH, Qin HD, Hu ZL, Zhang TZ, Zhang YM (2011) Mapping of epistatic quantitative traits loci in four-way crosses. Theor Appl Genet 122: 33-48.
10. Hibrand-Saint Oyant L, Crespel L, Rajapakse S, Zhang L, Foucher F (2008) Genetic linkage maps of rose constructed with new microsatellite markers and locating QTL controlling flowering traits. Tree Genet Genomes 4: 11-23.
11. Imtiaz M, Ogbonnaya FC, Oman J, Ginkel M (2008) Characterization of quantitative trait loci controlling genetic variation for preharvest spouting in synthetic backcross-derived wheat lines. Genetics 178: 1725-1736.
12. Jiang J, Chen F, Guo W (2003) Heredity of several characters in Dendranthema grandiflora with small inflorescences. J Nanjing Agric Univ 26(2): 11-15.
13. 2 population. Plant Prod Sci 11: 447-456.
14. Kawamura K, Hibrand-Saint Oyant L, Crespel L, Thouroude T, Lalanne D, Foucher F (2011) Quantitative trait loci for flowering time and inflorescence architecture in rose. Theor Appl Genet 122: 661-675.
15. Kenis K, Keulemans J (2007) Study of tree architecture of apple (Malus × domestica Borkh.) by QTL analysis of growth traits. Mol Breed 19: 193-208.
16. Knapp SJ, Stroup WW, Ross WM (1985) Exact confidence intervals for heritability on a progeny mean basis. Crop Sci 25: 192-194.
17. Kobayashi S, Fukuta Y, Sato T, Osaki M, Khush GS (2003) Molecular marker dissection of rice (Oryza sativa L.) plant architecture under temperate and tropical climates. Theor Appl Genet 107: 1350-1356.
18. Li Z (1998) Molecular analysis of epistasis affecting complex traits. In: Paterson AH (ed) Molecular dissection of complex traits. CRC Press, Boca Raton, pp 119-130.
19. Li XZ, Yuan XJ, Jiang S, Pan JS, Deng SL, Wang G, He HL, Wu AZ, Zhu LH, Koba T, Cai R (2008a) Detecting QTLs for plant architecture traits in cucumber (Cucumis sativus L.). Breed Sci 58: 453-600.
20. Li H, Ribaut JM, Li Z, Wang J (2008b) Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations. Theor Appl Genet 116: 243-260.
21. Li JZ, Fu CY, Zhang HL, Liu LF, Mu P, Li ZC (2009) QTL mapping and QTL × environment interactions of appearance quality in upland rice introgression lines under upland and lowland environments. J Agric Biotechnol 17: 651-658.
22. Lou J, Chen L, Yue G, Lou Q, Mei H, Xiong L, Luo L (2009) QTL mapping of grain quality traits in rice. J Cereal Sci 50: 145-151.
23. Malmberg RL, Held S, Waits A, Mauricio R (2005) Epistasis for fitness-related quantitative traits in Arabidopsis thaliana grown in the field. Genetica 171: 2013-2027.
24. Mohan A, Kulwal P, Singh R, Kumar V, Mir RR, Kumar J, Prasad M, Balyan HS, Gupta PK (2009) Genome-wide QTL analysis for pre-harvest spouting tolerance in bread wheat. Euphytica 168: 319-329.
25. Okogbenin E, Fregene M (2003) Genetic mapping of QTLs affecting productivity and plant architecture in a full-sib cross from non-inbred parents in cassava (Manihot esculenta Crantz). Theor Appl Genet 107: 1452-1462.
26. Onishi K, Horiuchi Y, Ishigoh ON, Takagi K, Ichikawa N, Maruoka M, Sano Y (2007) A QTL cluster for plant architecture and its ecological significance in Asian wild rice [Oryza sativa]. Breed Sci 57: 7-16.
27. Ravi K, Vadez V, Isobe S, Mir RR, Guo Y, Nigam SN, Gowda MVC, Radhakrishnan T, Bertioli DJ, Knapp SJ, Varshney RK (2011) Identification of several small main-effect QTL and a large number of epistatic QTLs for drought tolerance related traits in groundnut (Arachis hypogaea L.). Theor Appl Genet 122: 1119-1132.
28. Segura V, Denance C, Durel CE, Costes E (2007) Wide range QTL analysis for complex architectural traits in a 1-year-old apple progeny. Genome 50: 159-171.
29. Segura V, Durel CE, Costes E (2009) Dissecting apple tree architecture into genetic, ontogenetic and environmental effects: QTL mapping. Tree Genet Genomes 5: 165-179.
30. Sen S, Churchill GA (2001) A statistical framework for quantitative trait mapping. Genetics 159: 371-387.
31. Song X, Zhang T (2009) Quantitative trait loci controlling plant architectural traits in cotton. Plant Sci 177: 317-323.
32. Thumma BR, Southerton SG, Bell JC, Owen JV, Henery ML, Moran GF (2010) Quantitative trait locus (QTL) analysis of wood quality traits in Eucalyptus nitens. Tree Genet Genomes 6: 305-317.
33. Wang Y, Li J (2005) The plant architecture of rice (Oryza sativa). Plant Mol Biol 59: 75-84.
34. Wang B, Wu Y, Huang N, Zhu X, Guo W, Zhang T (2006) QTL mapping for plant architecture traits in upland cotton using RILs and SSR markers. Acta Genet Sin 33: 161-170.
35. Xu SZ, Jia ZY (2007) Genome-wide analysis of epistatic effects for quantitative traits in barley. Genetics 175: 1955-1963.
36. Xu D, Cai Y, Lv X, Dai G, Wang G, Wang J, Sun H, Tan H (2009) QTL mapping for plant-tape traits in maize. J Maize Sci 17(6): 27-31.
37. Yagi M, Onozaki T, Taneya M, Watanabe H, Yoshimura T, Yoshinari T, Ochiai Y, Shibata H (2006) Construction of a genetic linkage map for the carnation by using RAPD and SSR markers and mapping quantitative trait loci (QTL) for resistance to bacterial wilt caused by Burkholderia caryophylli. J Jpn Soc Hort Sci 75: 166-172.
38. Yamamoto T, Yonemaru J, Yano M (2009) Towards the understanding of complex trait in rice: substantially or superficially? DNA Res 16: 141-154.
39. Yan Z, Visser PB, Hendriks T, Prins TW, Stam P, Dolstra O (2007) QTL analysis of variation for vigour in rose. Euphytica 154: 53-62.
40. Yang J, Zhu J, Williams RW (2007) Mapping the genetic architecture of complex traits in experimental population. Bioinformatics 23: 1527-1536.
41. Yang J, Hu CC, Hu H, Yu RD, Xia Z, Ye XZ, Zhu J (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental population. Bioinformatics 24: 721-723.
42. Yang X, Guo Y, Yan J, Zhang J, Song T, Rocheford T, Li J (2010) Major and minor QTL and epistasis contribute to fatty acid compositions and oil concentration in high-oil maize. Theor Appl Genet 120: 665-678.
43. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
44. Zhang K, Tian J, Zhao L, Liu B, Chen G (2009) Detection of quantitative trait loci for heading date based on the doubled haploid progeny of two elite Chinese wheat cultivars. Genetica 135: 257-265.
45. Zhang F, Fang W, Chen F, Chen S (2010a) Combining ability analysis on ornamental characters of chrysanthemum. Acta Hort Sin 37: 589-596.
46. Zhang F, Chen F, Fang W, Chen S (2010b) Detection of RAPD and ISSR markers associated with ornamental traits of chrysanthemum in vegetative stage. Acta Hort Sin 37: 1345-1350.
47. Zhang F, Chen S, Chen F, Fang W, Chen Y, Li F (2011a) SRAP-based mapping and QTL detection for inflorescence-related traits in chrysanthemum (Dendranthema morifolium). Mol Breed 27: 11-23.
48. Zhang F, Chen F, Fang W, Chen S, Li F (2011b) Heterosis and major gene plus polygene mixed genetic analysis for vegetative traits in chrysanthemum. Sci Silvae Sin 47: 46-52.
49. Zhang F, Chen S, Chen F, Fang W, Deng Y, Chang Q, Liu P (2011c) Genetic analysis and associated SRAP markers for flowering traits of chrysanthemum (Chrysanthemum morifolium). Euphytica 177: 15-24.
50. Zhao J, Chen F, Teng N, Chen S (2009) Genetic analysis and RAPD marker of creeping habits in ground-cover chrysanthemum. Sci Agric Sin 42: 734-741.