SRAP-based mapping and QTL detection for inflorescence-related traits in chrysanthemum (Dendranthema morifolium)

Molecular Breeding

Volumn 27, Issue 1, 2011, Pages 11-23

  Zhang, Fei ^a   Chen, Sumei ^a   Chen, Fadi ^a   Fang, Weimin ^a   Chen, Yu ^a   Li, Fengtong ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Chrysanthemum; Genetic mapping; Inflorescence related traits; QTL detection; SRAP

Indexed keywords

CHRYSANTHEMUM; DENDRANTHEMA; EAST ASIAN COUNTRIES; EUROPEAN COUNTRIES; GENETIC LINKAGE MAPS; GENETIC MAPPING; INFLORESCENCE-RELATED TRAIT; LINKAGE GROUPS; QTL DETECTION; SRAP;

VEGETATION MAPPING;

CHRYSANTHEMUM; CHRYSANTHEMUM X MORIFOLIUM;

EID: 78650723941     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-010-9409-1     Document Type: Article

References (64)

1. Abe H, Nakano M, Nakatsuka A et al (2002) Genetic analysis of floral anthocyanin pigmentation traits in Asiatic hybrid lily using molecular linkage maps. Theor Appl Genet 105: 1175-1182.
2. Anderson NO, Ascher PD (2000) Fertility changes in inbred families of self-incompatible chrysanthemums (Dendranthema grandiflorum). J Am Soc Hortic Sci 125(5): 619-625.
3. Beedanagari SR, Dove SK, Wood BW, Conner PJ (2005) A first linkage map of pecan cultivars based on RAPD and AFLP markers. Theor Appl Genet 110: 1127-1137.
4. Bennett JH (1953) Linkage in hexasomic inheritance. Heredity 7: 265-283.
5. Bennett JH (1954) Panmixia with tetrasomic and hexasomic inheritance. Genetics 39: 150-158.
6. Bradshaw JE, Hackett CA, Pande B et al (2008) QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum). Theor Appl Genet 116: 193-211.
7. Brennan R, Jorgensen L, Hackett C et al (2008) The development of a genetic linkage map of blackcurrent (Ribes nigrum L.) and the identification of regions associated with key fruit quality and agronomic traits. Euphytica 161: 19-34.
8. Chakravarti A, Lasher L, Reefer J (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128: 175-182.
9. Chen FD, Chen PD, Li HJ (1996) Genome analysis and their phylogenetic relationships of several wild species of Dendranthema in China. Acta Hortic Sin 23(1): 67-72.
10. Chen FD, Li FT, Chen SM, Guan ZY, Fang WM (2009) Meiosis and pollen germinability in small-flowered anemone type chrysanthemum cultivars. Plant Syst Evol 280: 143-151.
11. Crespel L, Chirollet M, Durel C, Zhang D, Meynet J, Gudin S (2002) Mapping of qualitative and quantitative phenotypic traits in Rosa using AFLP markers. Theor Appl Genet 105: 1207-1214.
12. Cui NX, Chen FD, Zhao HB, Fang WM, Wang ZM (2006) Research on meiosis of some Dendranthema species and their hybrids. Acta Hortic Sin 33(5): 1033-1038.
13. Dai SL, Chen JY, Li WB (1998) Application of RAPD analysis in the study on the origin of Chinese cultivated chrysanthemum. Acta Bot Sin 40(11): 1053-1059.
14. Dawson CDR (1941) Tetrasomic inheritance in Lotus corniculatus L. J Genet 42: 49-72.
15. Dowrick GJ (1953) The chromosomes of Chrysanthemum, I: garden varieties. Heredity 7: 59-72.
16. Dufour P, Johnsson C, Antoine-Michard S, Cheng R, Murigneux A, Beckert M (2001) Segregation distortion at marker loci: variation during microspore embryogenesis in maize. Theor Appl Genet 102: 993-1001.
17. Dugo ML, Satovic Z, Millan T et al (2005) Genetic mapping of QTLs controlling horticultural traits in diploid roses. Theor Appl Genet 111: 511-520.
18. Dunemann F, Kahnau R, Stange I (1999) Analysis of complex leaf and flower characters in Rhododendron using a molecular linkage map. Theor Appl Genet 98: 1146-1155.
19. Ferriol M, Pico B, Nuez F (2003) Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor Appl Genet 107: 271-282.
20. Gonzalo MJ, Oliver M, Garcia-Mas J et al (2005) Simple-sequence repeat markers used in merging linkage maps of melon (Cucumis melo L.). Theor Appl Genet 110: 802-811.
21. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137: 1121-1137.
22. Han TH, van Eck H, de Jeu M, Jacobsen E (2002) The construction of a linkage map of Alstroemeria aurea by AFLP markers. Euphytica 128: 153-164.
23. Han XY, Wang LS, Liu ZA, Jan DR, Shu QY (2008) Characterization of sequence-related amplified polymorphism markers analysis of tree peony bud sports. Scientia Hortic 115: 261-267.
24. Hulbert S, Ilott T, Legg EJ, Lincoln S, Lander E, Michelmore R (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction length polymorphism. Genetics 120: 947-958.
25. Jones A (1967) Theoretical segregation ratios of qualitatively inherited characters for hexaploid sweetpotato (Ipomoea batatas). Bull No 1368 USDA Tech.
26. Kolmogoroff A (1941) Confidence limits for an unknown distribution function. Ann Math Stat 12: 461-463.
27. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
28. Kriegner A, Cervantes JC, Burg K et al (2003) A genetic linkage map of sweet potato [Ipomoea batatas (L.) Lam.] based on AFLP markers. Mol Breed 11: 169-185.
29. Langton FA (1989) Inheritance in Chrysanthemum morifolium Ramat. Heredity 62: 419-423.
30. Lerceteau E, Guerin G, Laigret F, Denoyes-Rothan B (2003) Characterization of mixed disomic and polysomic inheritance in the octoploid strawberry (Fragaria x ananassa) using AFLP mapping. Theor Appl Genet 107: 619-628.
31. Li XL, Chen FD (2007) Self-incompatibility in Dendranthema morifolium. J Wuhan Bot Res 25(6): 591-595.
32. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103: 455-461.
33. Li C, Chen FD, Zhao HB, Fang WM (2008) Karyotype diversity of chrysanthemum cultivars with small inflorescences. Acta Hortic Sin 35(l): 71-80.
34. Lilliefors HW (1967) On the Kolmogorov-Smirnov test for normality on the resolution of AFLP in plants with small genomes. Focus 18: 68-69.
35. Lin ZX, Zhang YX, Zhang XL, Guo XP (2009) A high-density integrative linkage map for Gossypium hirsutum. Euphytica 166: 35-45.
36. Lowe KM, Walker MA (2006) Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) × Riparia Gloire (Vitis riparia). Theor Appl Genet 112: 1582-1592.
37. Maliepaard C, Jansen J, van Ooijen JW (1997) Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequence for applications. Genet Res 70: 235-250.
38. Murray M, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321-4325.
39. Nazeer MA, Khoshoo TN (1985) Meiotic variations in Chrysanthemum morifolium complex. Nucleus (Calcutta) 28: 35-41.
40. Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM (2004) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109: 167-175.
41. Nilsson NO, Hallden C, Hansen M, Hjerdin A, Sall T (1997) Comparing the distribution of RAPD and RFLP markers in a high density linkage map of sugar beet. Genome 40: 644-651.
42. Nordenskiöld H (1953) A genetical study in the mode of segregation in hexaploid Pheum pratense. Hereditas 39: 469-488.
43. Oliveira K, Pinto LR, Marconi TG et al (2007) Functional integrated genetic linkage map based on EST-markers for sugarcane (Saccharum spp.) commercial cross. Mol Breed 20: 189-208.
44. Oyant LHS, Crespel L, Rajapakse S, Zhang L, Foucher F (2008) Genetic linkage maps of rose constructed with new microsatellite markers and locating QTL controlling flowering traits. Tree Genet Gen 4: 11-23.
45. Peace C, Vithanage V, Turnbull C, Carroll B (2003) A genetic map of macadamia based on randomly amplified DNA fingerprinting (RAF) markers. Euphytica 134: 17-26.
46. Quillet MC, Madjidian N, Griveau Y et al (1995) Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus. Theor Appl Genet 91: 1195-1202.
47. Remay A, Balanne D, Thouroude T, Couviour FL, Oyant LHS, Foucher F (2009) A survey of flowering genes reveals the role of gibberellins in floral control in rose. Theor Appl Genet 119: 767-781.
48. Saha MC, Mian R, Zwonitzer JC, Chekhovskiy K, Hopkins AA (2005) An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schred.). Theor Appl Genet 110: 323-336.
49. Shen XL, Guo WZ, Lu QX et al (2007) Genetic mapping of quantitative trait loci for fiber quality and yield traits by RIL approach in upland cotton. Euphytica 155: 371-380.
50. Tang FP, Chen FD, Chen SM, Teng NJ, Fang WM (2009) Intergeneric hybridization and relationship of genera within the tribe Anthemideae Cass. (I. Dendranthema crassum (Kitam.) kitam. × Crossostephium chinense (L.) Makino). Euphytica 169: 133-140.
51. Ukoskit K, Thompson PG (1997) Autopolyploidy versus allopolyploidy and low-density randomly amplified polymorphic DNA linkage maps of sweetpotato. J Am Soc Hortic Sci 122: 822-828.
52. van der Rouppe JNAM, van Zandvoort P, van Eck HJ et al (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255: 438-447.
53. van Ooijen JW, Voorrips RE (2001) JoinMap v3. 0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
54. Wang BQ, Porter AH (2004) An AFLP-based interspecific linkage map of sympatric hybridizing colias butterflies. Genetics 168: 215-225.
55. Wang CY, Chen JY, Maarten AJ (2004) Molecular evolution and phylogeny of florist's chrysanthemum and related species. J Beijing For Univ S1: 91-96.
56. Wang S, Basten JC, Zeng ZB (2007) Window QTL Cartographer Version 2. 5. Statistical genetics. North Carolina State University, USA.
57. Warnke SE, Barker RE, Jung G et al (2004) Genetic linkage mapping of an annual x perennial ryegrass population. Theor Appl Genet 109: 294-304.
58. Watanabe K (1977) The control of diploid-like meiosis in polyploid texa of Chrysanthemum (Compositae). Jpn J Genet 52(2): 125-131.
59. Watanabe K (1983) Studies on the control of diploid-like meiosis in polyploid texa of Chrysanthemum. Theor Appl Genet 66: 9-14.
60. Xu YF, Chen FD, Chen SM, Teng NJ, Li FT (2009) Seed set of inbred, meiosis and pollen capacity of five chrysanthemum cultivars. Acta Bot Bore-Occi Sin 29(3): 469-474.
61. Yagi M, Onosaki T, Taneya M, Watanabe H, Yoshimura T, Yoshinari T, Ochiai Y, Shibata M (2006) Construction of a genetic linkage map fro the carnation by using RAPD and SSR markers and mapping quantitative trait loci (QTL) for resistance to bacterial wilt caused by Burkholderia caryophylli. J Jpn Soc Hortic Sci 75(2): 166-172.
62. Yasukochi Y (1998) A dense genetic linkage map of the silkworm, Bombyx mori, covering all chromosomes based on 1018 molecular markers. Genetics 150: 1513-1525.
63. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
64. Zhang ZS, Hu MC, Zhang J et al (2009) Construction of a comprehensive PCR-based marker linkage map and QTL mapping for fiber quality traits in up land cotton (Gossypium hirsutum L.). Mol Breed 24: 49-61.