Multiplex proteomics analysis of gender-associated proteins in Brugia malayi

International Journal for Parasitology

Volumn 42, Issue 9, 2012, Pages 841-850

  Jiang, Daojun ^a   Malone, James ^b   Townsend, Reid ^b   Weil, Gary J ^a   Li, Benwen ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b USA   (United States)

Author keywords

Brugia malayi; Gender associated proteins; In situ hybridization; Multiplex proteomics analysis; Two dimensional difference in gel electrophoresis

Indexed keywords

GENDER ASSOCIATED PROTEIN; LACTATE DEHYDROGENASE; MICROORGANISM PROTEIN; PARASITE PROTEIN; UNCLASSIFIED DRUG;

BIOINFORMATICS; ELECTROKINESIS; EMBRYONIC DEVELOPMENT; GAMETE; GENDER; GENOME; HYBRIDIZATION; NEMATODE; PROTEIN; PROTEOMICS; RNA;

ARTICLE; BRUGIA MALAYI; CONTROLLED STUDY; GA GENE; GENE; GENE EXPRESSION; GENE LOCATION; GENOMIC IN SITU HYBRIDIZATION; MASS SPECTROMETRY; MORULA; NONHUMAN; OOCYTE; PHENOTYPE; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN MODIFICATION; PROTEOMICS; RNA INTERFERENCE; SEX DIFFERENCE; SPERMATOCYTE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; BRUGIA MALAYI; COMPUTATIONAL BIOLOGY; FEMALE; GENE EXPRESSION REGULATION; IN SITU HYBRIDIZATION; MALE; PROTEOMICS; TRANSCRIPTOME;

BRUGIA MALAYI; CAENORHABDITIS ELEGANS; NEMATODA;

EID: 84865437871     PISSN: 00207519     EISSN: 18790135     Source Type: Journal    
DOI: 10.1016/j.ijpara.2012.06.004     Document Type: Article

References (29)

1. Alban A., David S.O., Bjorkesten L., Andersson C., Sloge E., Lewis S., Currie I. A novel experimental design for comparative two-dimensional gel analysis: two-dimensional difference gel electrophoresis incorporating a pooled internal standard. Proteomics 2003, 3:36-44.
2. Bennuru S., Semnani R., Meng Z., Ribeiro J.M., Veenstra T.D., Nutman T.B. Brugia malayi excreted/secreted proteins at the host/parasite interface: stage- and gender-specific proteomic profiling. PLoS Negl. Trop. Dis. 2009, 3:e410.
3. Bennuru S., Meng Z., Ribeiro J.M., Semnani R.T., Ghedin E., Chan K., Lucas D.A., Veenstra T.D., Nutman T.B. Stage-specific proteomic expression patterns of the human filarial parasite Brugia malayi and its endosymbiont Wolbachia. Proc. Nat. Acad. Sci. U.S.A. 2011, 108:9649-9654.
4. Bondarenko P.V., Chelius D., Shaler T.A. Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry. Anal. Chem. 2002, 74:4741-4749.
5. Bredemeyer A.J., Lewis R.M., Malone J.P., Davis A.E., Gross J., Townsend R.R., Ley T.J. A proteomic approach for the discovery of protease substrates. Proc. Natl. Acad. Sci. USA 2004, 101:11785-11790.
6. C. elegans Sequencing Consortium, 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012-2018.
7. Ceylan-Isik A.F., LaCour K.H., Ren J. Sex difference in cardiomyocyte function in normal and metallothionein transgenic mice: the effect of diabetes mellitus. J. Appl. Physiol. 2006, 100:1638-1646.
8. Chelius D., Bondarenko P.V. Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry. J. Proteome Res. 2002, 1:317-323.
9. Chirac P., Torreele E. Global framework on essential health R&D. Lancet 2006, 367:1560-1561.
10. Crowther G.J., Shanmugam D., Carmona S.J., Doyle M.A., Hertz-Fowler C., Berriman M., Nwaka S., Ralph S.A., Roos D.S., Van Voorhis W.C., Aguero F. Identification of attractive drug targets in neglected-disease pathogens using an in silico approach. PLoS Negl. Trop. Dis. 2010, 4:e804.
11. Ghaemmaghami S., Huh W.K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S. Global analysis of protein expression in yeast. Nature 2003, 425:737-741.
12. Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J., Allen J.E., Delcher A.L., Guiliano D.B., Miranda-Saavedra D., Angiuoli S.V., Creasy T., Amedeo P., Haas B., El-Sayed N.M., Wortman J.R., Feldblyum T., Tallon L., Schatz M., Shumway M., Koo H., Salzberg S.L., Schobel S., Pertea M., Pop M., White O., Barton G.J., Carlow C.K., Crawford M.J., Daub J., Dimmic M.W., Estes C.F., Foster J.M., Ganatra M., Gregory W.F., Johnson N.M., Jin J., Komuniecki R., Korf I., Kumar S., Laney S., Li B.W., Li W., Lindblom T.H., Lustigman S., Ma D., Maina C.V., Martin D.M., McCarter J.P., McReynolds L., Mitreva M., Nutman T.B., Parkinson J., Peregrin-Alvarez J.M., Poole C., Ren Q., Saunders L., Sluder A.E., Smith K., Stanke M., Unnasch T.R., Ware J., Wei A.D., Weil G., Williams D.J., Zhang Y., Williams S.A., Fraser-Liggett C., Slatko B., Blaxter M.L., Scott A.L. Draft genome of the filarial nematode parasite Brugia malayi. Science 2007, 317:1756-1760.
13. Havlis J., Thomas H., Sebela M., Shevchenko A. Fast-response proteomics by accelerated in-gel digestion of proteins. Anal. Chem. 2003, 75:1300-1306.
14. Hewitson J.P., Harcus Y.M., Curwen R.S., Dowle A.A., Atmadja A.K., Ashton P.D., Wilson A., Maizels R.M. The secretome of the filarial parasite, Brugia malayi: proteomic profile of adult excretory-secretory products. Mol. Biochem. Parasitol. 2008, 160:8-21.
15. Jiang D., Li B.W., Fischer P.U., Weil G.J. Localization of gender-regulated gene expression in the filarial nematode Brugia malayi. Int. J. Parasitol. 2008, 38:503-512.
16. Kumar S., Chaudhary K., Foster J.M., Novelli J.F., Zhang Y., Wang S., Spiro D., Ghedin E., Carlow C.K. Mining predicted essential genes of Brugia malayi for nematode drug targets. PLoS One 2007, 2:e1189.
17. Lagranha C.J., Deschamps A., Aponte A., Steenbergen C., Murphy E. Sex differences in the phosphorylation of mitochondrial proteins result in reduced production of reactive oxygen species and cardioprotection in females. Circ. Res. 2010, 106:1681-1691.
18. Li B.W., Rush A.C., Tan J., Weil G.J. Quantitative analysis of gender-regulated transcripts in the filarial nematode Brugia malayi by real-time RT-PCR. Mol. Biochem. Parasitol. 2004, 137:329-337.
19. Li B.W., Rush A.C., Crosby S.D., Warren W.C., Williams S.A., Mitreva M., Weil G.J. Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Mol. Biochem. Parasitol. 2005, 143:49-57.
20. Li B.W., Rush A.C., Jiang D.J., Mitreva M., Abubucker S., Weil G.J. Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets. PLoS Negl. Trop. Dis. 2011, 5:e947.
21. Liu H., Sadygov R.G., Yates J.R. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76:4193-4201.
22. Maizels R.M., Blaxter M.L., Scott A.L. Immunological genomics of Brugia malayi: filarial genes implicated in immune evasion and protective immunity. Parasite Immunol. 2001, 23:327-344.
23. Moreno Y., Geary T.G. Stage- and gender-specific proteomic analysis of Brugia malayi excretory-secretory products. PLoS Negl. Trop. Dis. 2008, 2:e326.
24. Osei-Atweneboana M.Y., Eng J.K., Boakye D.A., Gyapong J.O., Prichard R.K. Prevalence and intensity of Onchocerca volvulus infection and efficacy of ivermectin in endemic communities in Ghana: a two-phase epidemiological study. Lancet 2007, 369:2021-2029.
25. Reinke V., Smith H.E., Nance J., Wang J., Van Doren C., Begley R., Jones S.J., Davis E.B., Scherer S., Ward S., Kim S.K. A global profile of germline gene expression in C. elegans. Mol. Cell 2000, 6:605-616.
26. Tonge R., Shaw J., Middleton B., Rowlinson R., Rayner S., Young J., Pognan F., Hawkins E., Currie I., Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 2001, 1:377-396.
27. Unlu M., Morgan M.E., Minden J.S. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 1997, 18:2071-2077.
28. Wang W., Zhou H., Lin H., Roy S., Shaler T.A., Hill L.R., Norton S., Kumar P., Anderle M., Becker C.H. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal. Chem. 2003, 75:4818-4826.
29. Zhong Y., Reiser P.J., Matlib M.A. Gender differences in myosin heavy chain-beta and phosphorylated phospholamban in diabetic rat hearts. Am. J. Physiol. Heart Circ. Physiol. 2003, 285:H2688-H2693.