메뉴 건너뛰기




Volumn 7, Issue 8, 2012, Pages

CD8 T cell epitope distribution in viruses reveals patterns of protein biosynthesis

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; GAG PROTEIN; HLA A ANTIGEN; HLA B ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; NONSTRUCTURAL PROTEIN 5A; NONSTRUCTURAL PROTEIN 5B; PROTEOME; VIRUS PROTEIN; HLA ANTIGEN; VIRAL PROTEIN;

EID: 84865412394     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043674     Document Type: Article
Times cited : (19)

References (34)
  • 1
    • 0032549142 scopus 로고    scopus 로고
    • Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen
    • Garcia KC, Degano M, Pease L, Huang M, Peterson PA, et al. (1998) Structural basis of plasticity in T cell receptor recognition of a self peptide-MHC antigen. Science 279: 1166-1172.
    • (1998) Science , vol.279 , pp. 1166-1172
    • Garcia, K.C.1    Degano, M.2    Pease, L.3    Huang, M.4    Peterson, P.A.5
  • 2
    • 0037377309 scopus 로고    scopus 로고
    • Comparison of overlapping peptide sets for detection of antiviral CD8 and CD4 T cell responses
    • Draenert R, Altfeld M, Brander C, Basgoz N, Corcoran C, et al. (2003) Comparison of overlapping peptide sets for detection of antiviral CD8 and CD4 T cell responses. J Immunol Methods 275: 19-29.
    • (2003) J Immunol Methods , vol.275 , pp. 19-29
    • Draenert, R.1    Altfeld, M.2    Brander, C.3    Basgoz, N.4    Corcoran, C.5
  • 3
    • 70449416038 scopus 로고    scopus 로고
    • Prediction of MHC-peptide binding: a systematic and comprehensive overview
    • Lafuente EM, Reche PA, (2009) Prediction of MHC-peptide binding: a systematic and comprehensive overview. Curr Pharm Des 15: 3209-3220.
    • (2009) Curr Pharm Des , vol.15 , pp. 3209-3220
    • Lafuente, E.M.1    Reche, P.A.2
  • 4
    • 77956881280 scopus 로고    scopus 로고
    • Computational analysis and modeling of cleavage by the immunoproteasome and the constitutive proteasome
    • Diez-Rivero CM, Lafuente EM, Reche PA, (2010) Computational analysis and modeling of cleavage by the immunoproteasome and the constitutive proteasome. BMC Bioinformatics 11: 479.
    • (2010) BMC Bioinformatics , vol.11 , pp. 479
    • Diez-Rivero, C.M.1    Lafuente, E.M.2    Reche, P.A.3
  • 5
    • 77949368187 scopus 로고    scopus 로고
    • Quantitative modeling of peptide binding to TAP using support vector machine
    • Diez-Rivero CM, Chenlo B, Zuluaga P, Reche PA, (2010) Quantitative modeling of peptide binding to TAP using support vector machine. Proteins 78: 63-72.
    • (2010) Proteins , vol.78 , pp. 63-72
    • Diez-Rivero, C.M.1    Chenlo, B.2    Zuluaga, P.3    Reche, P.A.4
  • 6
    • 20844434026 scopus 로고    scopus 로고
    • Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding
    • Tenzer S, Peters B, Bulik S, Schoor O, Lemmel C, et al. (2005) Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding. Cell Mol Life Sci 62: 1025-1037.
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1025-1037
    • Tenzer, S.1    Peters, B.2    Bulik, S.3    Schoor, O.4    Lemmel, C.5
  • 7
    • 0242581356 scopus 로고    scopus 로고
    • Genome-wide characterization of a viral cytotoxic T lymphocyte epitope repertoire
    • Zhong W, Reche PA, Lai CC, Reinhold B, Reinherz EL, (2003) Genome-wide characterization of a viral cytotoxic T lymphocyte epitope repertoire. J Biol Chem 278: 45135-45144.
    • (2003) J Biol Chem , vol.278 , pp. 45135-45144
    • Zhong, W.1    Reche, P.A.2    Lai, C.C.3    Reinhold, B.4    Reinherz, E.L.5
  • 8
    • 23644443226 scopus 로고    scopus 로고
    • Integrated modeling of the major events in the MHC class I antigen processing pathway
    • Donnes P, Kohlbacher O, (2005) Integrated modeling of the major events in the MHC class I antigen processing pathway. Protein Sci 14: 2132-2140.
    • (2005) Protein Sci , vol.14 , pp. 2132-2140
    • Donnes, P.1    Kohlbacher, O.2
  • 11
    • 0027250808 scopus 로고
    • How does HIV cause AIDS?
    • Weiss RA, (1993) How does HIV cause AIDS? Science 260: 1273-1279.
    • (1993) Science , vol.260 , pp. 1273-1279
    • Weiss, R.A.1
  • 12
    • 34250355170 scopus 로고    scopus 로고
    • Biology of influenza a virus
    • Cheung TK, Poon LL, (2007) Biology of influenza a virus. Ann N Y Acad Sci 1102: 1-25.
    • (2007) Ann N Y Acad Sci , vol.1102 , pp. 1-25
    • Cheung, T.K.1    Poon, L.L.2
  • 13
    • 23144443082 scopus 로고    scopus 로고
    • PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands
    • Reche PA, Reinherz EL, (2005) PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands. Nucleic Acids Res 33: W138-142.
    • (2005) Nucleic Acids Res , vol.33
    • Reche, P.A.1    Reinherz, E.L.2
  • 15
    • 0037342270 scopus 로고    scopus 로고
    • Quantitating protein synthesis, degradation, and endogenous antigen processing
    • Princiotta MF, Finzi D, Qian SB, Gibbs J, Schuchmann S, et al. (2003) Quantitating protein synthesis, degradation, and endogenous antigen processing. Immunity 18: 343-354.
    • (2003) Immunity , vol.18 , pp. 343-354
    • Princiotta, M.F.1    Finzi, D.2    Qian, S.B.3    Gibbs, J.4    Schuchmann, S.5
  • 16
    • 0035399848 scopus 로고    scopus 로고
    • Not such a dismal science: the economics of protein synthesis, folding, degradation and antigen processing
    • Yewdell JW, (2001) Not such a dismal science: the economics of protein synthesis, folding, degradation and antigen processing. Trends Cell Biol 11: 294-297.
    • (2001) Trends Cell Biol , vol.11 , pp. 294-297
    • Yewdell, J.W.1
  • 17
    • 0035500453 scopus 로고    scopus 로고
    • Cutting edge: neosynthesis is required for the presentation of a T cell epitope from a long-lived viral protein
    • Khan S, de Giuli R, Schmidtke G, Bruns M, Buchmeier M, et al. (2001) Cutting edge: neosynthesis is required for the presentation of a T cell epitope from a long-lived viral protein. J Immunol 167: 4801-4804.
    • (2001) J Immunol , vol.167 , pp. 4801-4804
    • Khan, S.1    de Giuli, R.2    Schmidtke, G.3    Bruns, M.4    Buchmeier, M.5
  • 18
    • 33745301876 scopus 로고    scopus 로고
    • Tight linkage between translation and MHC class I peptide ligand generation implies specialized antigen processing for defective ribosomal products
    • Qian SB, Reits E, Neefjes J, Deslich JM, Bennink JR, et al. (2006) Tight linkage between translation and MHC class I peptide ligand generation implies specialized antigen processing for defective ribosomal products. J Immunol 177: 227-233.
    • (2006) J Immunol , vol.177 , pp. 227-233
    • Qian, S.B.1    Reits, E.2    Neefjes, J.3    Deslich, J.M.4    Bennink, J.R.5
  • 19
    • 0034643348 scopus 로고    scopus 로고
    • The major substrates for TAP in vivo are derived from newly synthesized proteins
    • Reits E, A J, Vos JC, Grommé M, Neefjes J (2000) The major substrates for TAP in vivo are derived from newly synthesized proteins. Nature: 774-778.
    • (2000) Nature , pp. 774-778
    • Reits, E.A.J.1    Vos, J.C.2    Grommé, M.3    Neefjes, J.4
  • 20
    • 0030239693 scopus 로고    scopus 로고
    • Defective ribosomal products (DRiPs): a major source of antigenic peptides for MHC class I molecules?
    • Yewdell JW, Anton LC, Bennink JR, (1996) Defective ribosomal products (DRiPs): a major source of antigenic peptides for MHC class I molecules? J Immunol 157: 1823-1826.
    • (1996) J Immunol , vol.157 , pp. 1823-1826
    • Yewdell, J.W.1    Anton, L.C.2    Bennink, J.R.3
  • 21
    • 0017235955 scopus 로고
    • Determination of molar ratios of vesicular stomatitis virus induced RNA species in BHK21 cells
    • Villarreal LP, Breindl M, Holland JJ, (1976) Determination of molar ratios of vesicular stomatitis virus induced RNA species in BHK21 cells. Biochemistry 15: 1663-1667.
    • (1976) Biochemistry , vol.15 , pp. 1663-1667
    • Villarreal, L.P.1    Breindl, M.2    Holland, J.J.3
  • 22
    • 0033046472 scopus 로고    scopus 로고
    • Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
    • Yewdell JW, Bennink JR, (1999) Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses. Annu Rev Immunol 17: 51-88.
    • (1999) Annu Rev Immunol , vol.17 , pp. 51-88
    • Yewdell, J.W.1    Bennink, J.R.2
  • 23
    • 0035862326 scopus 로고    scopus 로고
    • Substantial differences in specificity of HIV-specific cytotoxic T cells in acute and chronic HIV infection
    • Goulder PJ, Altfeld MA, Rosenberg ES, Nguyen T, Tang Y, et al. (2001) Substantial differences in specificity of HIV-specific cytotoxic T cells in acute and chronic HIV infection. J Exp Med 193: 181-194.
    • (2001) J Exp Med , vol.193 , pp. 181-194
    • Goulder, P.J.1    Altfeld, M.A.2    Rosenberg, E.S.3    Nguyen, T.4    Tang, Y.5
  • 24
    • 0032055366 scopus 로고    scopus 로고
    • Superdominance among immunodominant H-2Kb-restricted epitopes and reversal by dendritic cell-mediated antigen delivery
    • Sandberg JK, Grufman P, Wolpert EZ, Franksson L, Chambers BJ, et al. (1998) Superdominance among immunodominant H-2Kb-restricted epitopes and reversal by dendritic cell-mediated antigen delivery. J Immunol 160: 3163-3169.
    • (1998) J Immunol , vol.160 , pp. 3163-3169
    • Sandberg, J.K.1    Grufman, P.2    Wolpert, E.Z.3    Franksson, L.4    Chambers, B.J.5
  • 25
    • 0029905742 scopus 로고    scopus 로고
    • Immunodominance of cytotoxic T lymphocyte epitopes co-injected in vivo and modulation by interleukin-12
    • Eberl G, Kessler B, Eberl LP, Brunda MJ, Valmori D, et al. (1996) Immunodominance of cytotoxic T lymphocyte epitopes co-injected in vivo and modulation by interleukin-12. Eur J Immunol 26: 2709-2716.
    • (1996) Eur J Immunol , vol.26 , pp. 2709-2716
    • Eberl, G.1    Kessler, B.2    Eberl, L.P.3    Brunda, M.J.4    Valmori, D.5
  • 26
    • 29244462802 scopus 로고    scopus 로고
    • Identification of protective and non-protective T cell epitopes in influenza
    • Epub 2005 Aug 2018
    • Crowe SR, Miller SC, Woodland DL (2006) Identification of protective and non-protective T cell epitopes in influenza. Vaccine 24: 452-456. Epub 2005 Aug 2018.
    • (2006) Vaccine , vol.24 , pp. 452-456
    • Crowe, S.R.1    Miller, S.C.2    Woodland, D.L.3
  • 27
    • 52049105157 scopus 로고    scopus 로고
    • Protective CD8 T cells against Plasmodium liver stages: immunobiology of an 'unnatural' immune response
    • Overstreet MG, Cockburn IA, Chen YC, Zavala F, (2008) Protective CD8 T cells against Plasmodium liver stages: immunobiology of an 'unnatural' immune response. Immunol Rev 225: 272-283.
    • (2008) Immunol Rev , vol.225 , pp. 272-283
    • Overstreet, M.G.1    Cockburn, I.A.2    Chen, Y.C.3    Zavala, F.4
  • 28
    • 0027462422 scopus 로고
    • Immunity to intracellular bacteria
    • Kaufmann SH, (1993) Immunity to intracellular bacteria. Annu Rev Immunol 11: 129-163.
    • (1993) Annu Rev Immunol , vol.11 , pp. 129-163
    • Kaufmann, S.H.1
  • 29
    • 18744368784 scopus 로고    scopus 로고
    • EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology
    • Epub 2005 Jan 2118
    • Reche PA, Zhang H, Glutting JP, Reinherz EL (2005) EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology. Bioinformatics 21: 2140-2141. Epub 2005 Jan 2118.
    • (2005) Bioinformatics , vol.21 , pp. 2140-2141
    • Reche, P.A.1    Zhang, H.2    Glutting, J.P.3    Reinherz, E.L.4
  • 30
    • 20944447214 scopus 로고    scopus 로고
    • The immune epitope database and analysis resource: from vision to blueprint
    • Peters B, Sidney J, Bourne P, Bui H, Buus S, et al. (2005) The immune epitope database and analysis resource: from vision to blueprint. PLoS Biol 3: e91.
    • (2005) PLoS Biol , vol.3
    • Peters, B.1    Sidney, J.2    Bourne, P.3    Bui, H.4    Buus, S.5
  • 31
    • 48449095267 scopus 로고    scopus 로고
    • PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
    • Epub 2008 Apr 2027
    • Garcia-Boronat M, Diez-Rivero CM, Reinherz EL, Reche PA (2008) PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res 36: W35-41. Epub 2008 Apr 2027.
    • (2008) Nucleic Acids Res , vol.36 , pp. 35-41
    • Garcia-Boronat, M.1    Diez-Rivero, C.M.2    Reinherz, E.L.3    Reche, P.A.4
  • 32
    • 33748335464 scopus 로고    scopus 로고
    • Elicitation from virus-naive individuals of cytotoxic T lymphocytes directed against conserved HIV-1 epitopes
    • Reche PA, Keskin DB, Hussey RE, Ancuta P, Gabuzda D, et al. (2006) Elicitation from virus-naive individuals of cytotoxic T lymphocytes directed against conserved HIV-1 epitopes. Med Immunol 5: 1.
    • (2006) Med Immunol , vol.5 , pp. 1
    • Reche, P.A.1    Keskin, D.B.2    Hussey, R.E.3    Ancuta, P.4    Gabuzda, D.5
  • 33
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J, (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 302: 205-217.
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 34
    • 0036727207 scopus 로고    scopus 로고
    • Prediction of MHC class I binding peptides using profile motifs
    • Reche PA, Glutting JP, Reinherz EL, (2002) Prediction of MHC class I binding peptides using profile motifs. Hum Immunol 63: 701-709.
    • (2002) Hum Immunol , vol.63 , pp. 701-709
    • Reche, P.A.1    Glutting, J.P.2    Reinherz, E.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.