Nitrate sensing and signaling in plants

Seminars in Cell and Developmental Biology

Volumn 23, Issue 6, 2012, Pages 648-654

  Bouguyon, Eléonore ^a   Gojon, Alain ^a   Nacry, Philippe ^a  

^a INRA   (France)

Author keywords

Arabidopsis thaliana; Development; Gene expression; Hormones; Nitrogen; Nutrition

Indexed keywords

NITRATE; PROTEIN KINASE; TRANSCRIPTION FACTOR;

ARABIDOPSIS; GENE EXPRESSION REGULATION; GENETIC TRANSDUCTION; NITRATE METABOLISM; NONHUMAN; PLANT GENETICS; PLANT GENOME; PLANT METABOLISM; PLANT NUTRIENT; PLANT ROOT; REVIEW; SIGNAL TRANSDUCTION;

ARABIDOPSIS THALIANA;

EID: 84865167595     PISSN: 10849521     EISSN: 10963634     Source Type: Journal    
DOI: 10.1016/j.semcdb.2012.01.004     Document Type: Review

References (58)

1. Crawford N.M., Glass A.D.M. Molecular and physiological aspects of nitrate uptake in plants. Trends Plant Sci 1998, 3:389-395.
2. Crawford N.M. Nitrate: nutrient and signal for plant growth. Plant Cell 1995, 7:859-868.
3. Stitt M. Nitrate regulation of metabolism and growth. Curr Opin Plant Biol 1999, 2:178-186.
4. Tsay Y.F., Chiu C.C., Tsai C.B., Ho C.H., Hsu P.K. Nitrate transporters and peptide transporters. FEBS Lett 2007, 581:2290-2300.
5. Gojon A., Nacry P., Davidian J.C. Root uptake regulation: a central process for NPS homeostasis in plants. Curr Opin Plant Biol 2009, 12:328-338.
6. Guerrero M.G., Vega J.M., Losada M. The assimilatory nitrate reducing system and its regulation. Annu Rev Plant Physiol 1981, 32:169-204.
7. Lam H.-M., Coschigano K.T., Oliveira I.C., Melo-Oliveira R., Coruzzi G.M. The molecular-genetics of nitrogen assimilation into amino acids in higher plants. Annu Rev Plant Physiol Plant Mol Biol 1996, 47:569-593.
8. Waraich E.A., Ahmad R., Saifullah, Ashraf M.Y., Ehsanullah Role of mineral nutrition in alleviation of drought stress in plants. Austral J Crop Sci 2011, 5:764-777.
9. Salsac L., Chaillou S., Morot-Gaudry J.-F., Lesaint C., Jolivet E. Nitrate and ammonium nutrition in plants. Plant Physiol Biochem 1987, 25:805-812.
10. - uptake systems by N- and C-status of Arabidopsis plants. Plant J 1999, 18:509-519.
11. Wang R., Tischner R., Gutierrez R.A., Hoffman M., Xing X., Chen M., et al. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 2004, 136:2512-2522.
12. Wang R., Guegler K., LaBrie S.T., Crawford N.M. Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes induced by nitrate. Plant Cell 2000, 12:1491-1510.
13. Scheible W.R., Morcuende R., Czechowski T., Fritz C., Osuna D., Palacios-Rojas N., et al. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 2004, 136:2483-2499.
14. Gutierrez R.A., Gifford M.L., Poultney C., Wang R., Shasha D.E., Coruzzi G.M., et al. Insights into the genomic nitrate response using genetics and the Sungear Software System. J Exp Bot 2007, 58:2359-2367.
15. Krouk G., Mirowski P., LeCun Y., Shasha D.E., Coruzzi G.M. Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate. Genome Biol 2010, 11:R123.
16. Krouk G., Crawford N.M., Coruzzi G.M., Tsay Y.F. Nitrate signaling: adaptation to fluctuating environments. Curr Opin Plant Biol 2010, 13:266-273.
17. Pant B.D., Musialak-Lange M., Nuc P., May P., Buhtz A., Kehr J., et al. Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 2009, 150:1541-1555.
18. Engelsberger W.R., Schulze W.X. Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen starved Arabidopsis seedlings. Plant J 2011, 7. 10.1111/j.1365-313X.2011.04848.x.
19. Alboresi A., Gestin C., Leydecker M.T., Bedu M., Meyer C., Truong H.N. Nitrate, a signal relieving seed dormancy in Arabidopsis. Plant Cell Environ 2005, 28:500-512.
20. Guo F.Q., Wang R., Chen M., Crawford N.M. The Arabidopsis dual-affinity nitrate transporter gene atnrt1.1 (chl1) is activated and functions in nascent organ development during vegetative and reproductive growth. Plant Cell 2001, 13:1761-2177.
21. --induced stimulation of leaf growth. J Exp Bot 2005, 56:1143-1152.
22. Castro-Marin I., Loef I., Bartetzko L., Searle I., Coupland G., Stitt M., et al. Nitrate regulates floral induction in Arabidopsis, acting independently of light, gibberellin and autonomous pathways. Planta 2011, 233:539-552.
23. Zhang H., Jennings A., Barlow P.W., Forde B.G. Dual pathways for regulation of root branching by nitrate. Proc Natl Acad Sci U S A 1999, 96:6529-6534.
24. Linkohr B.I., Williamson L.C., Fitter A.H., Nitrate Leyser H.M. phosphate availability and distribution have different effects on root system architecture of Arabidopsis. Plant J 2002, 29:751-760.
25. Krouk G., Lacombe B., Bielach A., Perrine-Walker F., Malinska K., Mounier E., et al. Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants. Dev Cell 2010, 18:927-937.
26. Zhang H., Forde B.G. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 1998, 279:407-409.
27. Remans T., Nacry P., Pervent M., Filleur S., Diatloff E., Mounier E., et al. The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. Proc Natl Acad Sci U S A 2006, 103:19206-19211.
28. Forde B.G. Local and long-range signaling pathways regulating plant responses to nitrate. Annu Rev Plant Biol 2002, 53:203-224.
29. Vidal E.A., Araus V., Lu C., Parry G., Green P.J., Coruzzi G.M., et al. Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2010, 107:4477-4482.
30. Chapin F.S. Integrated responses of plants to stress. Bioscience 1991, 41:29-36.
31. Kiba T., Kudo T., Kojima M., Sakakibara H. Hormonal control of nitrogen acquisition: roles of auxin, abscisic acid, and cytokinin. J Exp Bot 2011, 62:1399-1409.
32. Takei K., Ueda N., Aoki K., Kuromori T., Hirayama T., Shinozaki K., et al. AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant Cell Physiol 2004, 45:1053-1062.
33. Stewart V. Nitrate regulation of anaerobic respiratory gene-expression in Escherichia coli. Mol Microb 1993, 9:425-434.
34. Gojon A., Krouk G., Perrine-Walker F., Laugier E. Nitrate transceptor(s) in plants. J Exp Bot 2011.
35. Liu K.H., Tsay Y.F. Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation. EMBO J 2003, 22:1005-1013.
36. Filleur S., Dorbe M.F., Cerezo M., Orsel M., Granier F., Gojon A., et al. An Arabidopsis T-DNA mutant affected in Nrt2 genes is impaired in nitrate uptake. FEBS Lett 2001, 489:220-224.
37. Li W., Wang Y., Okamoto M., Crawford N.M., Siddiqi M.Y., Glass A.D. Dissection of the AtNRT2.1:AtNRT2.2 inducible high-affinity nitrate transporter gene cluster. Plant Physiol 2007, 143:425-433.
38. Munos S., Cazettes C., Fizames C., Gaymard F., Tillard P., Lepetit M., et al. Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. Plant Cell 2004, 16:2433-2447.
39. --demand signalling in Arabidopsis. Plant Physiol 2006, 142:1075-1086.
40. Ho C.H., Lin S.H., Hu H.C., Tsay Y.F. CHL1 functions as a nitrate sensor in plants. Cell 2009, 138:1184-1194.
41. Wang R., Xing X., Wang Y., Tran A., Crawford N.M. A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1. Plant Physiol 2009, 151:472-478.
42. Walch-Liu P., Forde B.G. Nitrate signalling mediated by the NRT1.1 nitrate transporter antagonises l-glutamate-induced changes in root architecture. Plant J 2008, 54:820-828.
43. Hachiya T., Watanabe C.K., Boom C., Tholen D., Takahara K., Kawai-Yamada M., et al. Ammonium-dependent respiratory increase is dependent on the cytochrome pathway in Arabidopsis thaliana shoots. Plant Cell Environ 2010, 33:1888-1897.
44. Little D.Y., Rao H., Oliva S., Daniel-Vedele F., Krapp A., Malamy J.E. The putative high-affinity nitrate transporter NRT2.1 represses lateral root initiation in response to nutritional cues. Proc Natl Acad Sci U S A 2005, 102:13693-13698.
45. Remans T., Nacry P., Pervent M., Girin T., Tillard P., Lepetit M., et al. A central role for the nitrate transporter NRT2.1 in the integrated morphological and physiological responses of the root system to nitrogen limitation in Arabidopsis. Plant Physiol 2006, 140:909-921.
46. Holsbeeks I., Lagatie O., Van Nuland A., Van de Velde S., Thevelein J.M. The eukaryotic plasma membrane as a nutrient-sensing device. Trends Biochem Sci 2004, 29:556-564.
47. Yendrek C.R., Lee Y.C., Morris V., Liang Y., Pislariu C.I., Burkart G., et al. A putative transporter is essential for integrating nutrient and hormone signaling with lateral root growth and nodule development in Medicago truncatula. Plant J 2010, 62:100-112.
48. Morere-Le Paven M.C., Viau L., Hamon A., Vandecasteele C., Pellizzaro A., Bourdin C., et al. Characterization of a dual-affinity nitrate transporter MtNRT1.3 in the model legume Medicago truncatula. J Exp Bot 2011, 62:5595-5605.
49. Rogato A., D'Apuzzo E., Barbulova A., Omrane S., Parlati A., Carfagna S., et al. Characterization of a developmental root response caused by external ammonium supply in Lotus japonicus. Plant Physiol 2010, 154:784-795.
50. Lima J.E., Kojima S., Takahashi H., von Wirén N. Ammonium triggers lateral root branching in Arabidopsis in an ammonium transporter1;3-dependent manner. Plant Cell 2010, 22:3621-3633.
51. Rouached H., Stefanovic A., Secco D., Bulak Arpat A., Gout E., Bligny R., et al. Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis. Plant J 2011, 65:557-570.
52. Benkova E., Michniewicz M., Sauer M., Teichmann T., Seifertova D., Jurgens G., et al. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 2003, 115:591-602.
53. Camargo A., Llamas A., Schnell R.A., Higuera J.J., González-Ballester D., Lefebvre P.A., et al. Nitrate signaling by the regulatory gene NIT2 in chlamydomonas. Plant Cell 2007, 19:3491-3503.
54. Castaings L., Camargo A., Pocholle D., Gaudon V., Texier Y., Boutet-Mercey S., et al. The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis. Plant J 2009, 57:426-435.
55. Rubin G., Tohge T., Matsuda F., Saito K., Scheible W.R. Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell 2009, 21:3567-3584.
56. Hu H.C., Wang Y.Y., Tsay Y.F. AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response. Plant J 2009, 57:264-278.
57. Gan Y., Filleur S., Rahman A., Gotensparre S., Forde B.G. Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Planta 2005, 222:730-742.
58. Ruffel S., Krouk G., Coruzzi G.M. A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling. Plant Physiol 2010, 152:445-452.