메뉴 건너뛰기




Volumn 11, Issue 12, 2010, Pages

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; TRANSCRIPTOME; NITROGEN; PLANT RNA; TRANSCRIPTION FACTOR;

EID: 78650335757     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2010-11-12-r123     Document Type: Article
Times cited : (228)

References (54)
  • 1
    • 0029328453 scopus 로고
    • Nitrate - nutrient and signal for plant-growth.
    • 10.1105/tpc.7.7.859, 160877, 7640524
    • Crawford NM. Nitrate - nutrient and signal for plant-growth. Plant Cell 1995, 7:859-868. 10.1105/tpc.7.7.859, 160877, 7640524.
    • (1995) Plant Cell , vol.7 , pp. 859-868
    • Crawford, N.M.1
  • 2
    • 77955891592 scopus 로고    scopus 로고
    • Nitrate signaling: adaptation to fluctuating environments.
    • 10.1016/j.pbi.2009.12.003, 20093067
    • Krouk G, Crawford NM, Coruzzi GM, Tsay YF. Nitrate signaling: adaptation to fluctuating environments. Curr Opin Plant Biol 2010, 13:266-273. 10.1016/j.pbi.2009.12.003, 20093067.
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 266-273
    • Krouk, G.1    Crawford, N.M.2    Coruzzi, G.M.3    Tsay, Y.F.4
  • 3
    • 75949101552 scopus 로고    scopus 로고
    • A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.
    • 10.1104/pp.109.148502, 19939945
    • Ruffel S, Krouk G, Coruzzi GM. A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling. Plant Physiol 2010, 152:445-452. 10.1104/pp.109.148502, 19939945.
    • (2010) Plant Physiol , vol.152 , pp. 445-452
    • Ruffel, S.1    Krouk, G.2    Coruzzi, G.M.3
  • 4
    • 51649111109 scopus 로고    scopus 로고
    • A systems view of nitrogen nutrient and metabolite responses in Arabidopsis.
    • 10.1016/j.pbi.2008.07.003, 18775665
    • Vidal EA, Gutierrez RA. A systems view of nitrogen nutrient and metabolite responses in Arabidopsis. Curr Opin Plant Biol 2008, 11:521-529. 10.1016/j.pbi.2008.07.003, 18775665.
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 521-529
    • Vidal, E.A.1    Gutierrez, R.A.2
  • 5
    • 0033831570 scopus 로고    scopus 로고
    • Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes induced by nitrate.
    • 10.1105/tpc.12.8.1491, 149118, 10948265
    • Wang R, Guegler K, LaBrie ST, Crawford NM. Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes induced by nitrate. Plant Cell 2000, 12:1491-1510. 10.1105/tpc.12.8.1491, 149118, 10948265.
    • (2000) Plant Cell , vol.12 , pp. 1491-1510
    • Wang, R.1    Guegler, K.2    LaBrie, S.T.3    Crawford, N.M.4
  • 6
    • 0037783247 scopus 로고    scopus 로고
    • Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism.
    • 10.1104/pp.103.021253, 166997, 12805587
    • Wang R, Okamoto M, Xing X, Crawford NM. Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol 2003, 132:556-567. 10.1104/pp.103.021253, 166997, 12805587.
    • (2003) Plant Physiol , vol.132 , pp. 556-567
    • Wang, R.1    Okamoto, M.2    Xing, X.3    Crawford, N.M.4
  • 7
    • 16544369956 scopus 로고    scopus 로고
    • Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis.
    • 10.1104/pp.104.044610, 523318, 15333754
    • Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 2004, 136:2512-2522. 10.1104/pp.104.044610, 523318, 15333754.
    • (2004) Plant Physiol , vol.136 , pp. 2512-2522
    • Wang, R.1    Tischner, R.2    Gutierrez, R.A.3    Hoffman, M.4    Xing, X.5    Chen, M.6    Coruzzi, G.7    Crawford, N.M.8
  • 8
    • 16544392329 scopus 로고    scopus 로고
    • Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
    • 10.1104/pp.104.047019, 523316, 15375205
    • Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 2004, 136:2483-2499. 10.1104/pp.104.047019, 523316, 15375205.
    • (2004) Plant Physiol , vol.136 , pp. 2483-2499
    • Scheible, W.R.1    Morcuende, R.2    Czechowski, T.3    Fritz, C.4    Osuna, D.5    Palacios-Rojas, N.6    Schindelasch, D.7    Thimm, O.8    Udvardi, M.K.9    Stitt, M.10
  • 9
    • 63549132294 scopus 로고    scopus 로고
    • A Systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis.
    • 10.1371/journal.pcbi.1000326, 2652106, 19300494
    • Krouk G, Tranchina D, Lejay L, Cruikshank AA, Shasha D, Coruzzi GM, Gutierrez RA. A Systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis. PLoS Comput Biol 2009, 5:e1000326. 10.1371/journal.pcbi.1000326, 2652106, 19300494.
    • (2009) PLoS Comput Biol , vol.5
    • Krouk, G.1    Tranchina, D.2    Lejay, L.3    Cruikshank, A.A.4    Shasha, D.5    Coruzzi, G.M.6    Gutierrez, R.A.7
  • 10
    • 38649096571 scopus 로고    scopus 로고
    • Cell-specific nitrogen responses mediate developmental plasticity.
    • 10.1073/pnas.0709559105, 2206617, 18180456
    • Gifford ML, Dean A, Gutierrez RA, Coruzzi GM, Birnbaum KD. Cell-specific nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci USA 2008, 105:803-808. 10.1073/pnas.0709559105, 2206617, 18180456.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 803-808
    • Gifford, M.L.1    Dean, A.2    Gutierrez, R.A.3    Coruzzi, G.M.4    Birnbaum, K.D.5
  • 11
    • 34147133691 scopus 로고    scopus 로고
    • Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis.
    • 10.1186/gb-2007-8-1-r7, 1839130, 17217541
    • Gutierrez RA LL, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM. Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biol 2007, 8:R7. 10.1186/gb-2007-8-1-r7, 1839130, 17217541.
    • (2007) Genome Biol , vol.8
    • Gutierrez, R.A.L.L.1    Dean, A.2    Chiaromonte, F.3    Shasha, D.E.4    Coruzzi, G.M.5
  • 13
    • 67650080221 scopus 로고    scopus 로고
    • A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule".
    • 10.1186/1752-0509-3-59, 2702358, 19500399
    • Nero D, Krouk G, Tranchina D, Coruzzi GM. A system biology approach highlights a hormonal enhancer effect on regulation of genes in a nitrate responsive "biomodule". BMC Syst Biol 2009, 3:59. 10.1186/1752-0509-3-59, 2702358, 19500399.
    • (2009) BMC Syst Biol , vol.3 , pp. 59
    • Nero, D.1    Krouk, G.2    Tranchina, D.3    Coruzzi, G.M.4
  • 14
    • 34547676098 scopus 로고    scopus 로고
    • Insights into the genomic nitrate response using genetics and the Sungear Software System.
    • 10.1093/jxb/erm079, 17470441
    • Gutierrez RA, Gifford ML, Poultney C, Wang R, Shasha DE, Coruzzi GM, Crawford NM. Insights into the genomic nitrate response using genetics and the Sungear Software System. J Exp Bot 2007, 58:2359-2367. 10.1093/jxb/erm079, 17470441.
    • (2007) J Exp Bot , vol.58 , pp. 2359-2367
    • Gutierrez, R.A.1    Gifford, M.L.2    Poultney, C.3    Wang, R.4    Shasha, D.E.5    Coruzzi, G.M.6    Crawford, N.M.7
  • 15
    • 34248170500 scopus 로고    scopus 로고
    • The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.
    • 10.1073/pnas.0605275103, 1748200, 17148611
    • Remans T, Nacry P, Pervent M, Filleur S, Diatloff E, Mounier E, Tillard P, Forde BG, Gojon A. The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. Proc Natl Acad Sci USA 2006, 103:19206-19211. 10.1073/pnas.0605275103, 1748200, 17148611.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 19206-19211
    • Remans, T.1    Nacry, P.2    Pervent, M.3    Filleur, S.4    Diatloff, E.5    Mounier, E.6    Tillard, P.7    Forde, B.G.8    Gojon, A.9
  • 17
    • 33751107448 scopus 로고    scopus 로고
    • Regulation of the high-affinity NO3- uptake system by NRT1.1-mediated NO3- demand signaling in Arabidopsis.
    • 10.1104/pp.106.087510, 1630733, 16998085
    • Krouk G, Tillard P, Gojon A. Regulation of the high-affinity NO3- uptake system by NRT1.1-mediated NO3- demand signaling in Arabidopsis. Plant Physiol 2006, 142:1075-1086. 10.1104/pp.106.087510, 1630733, 16998085.
    • (2006) Plant Physiol , vol.142 , pp. 1075-1086
    • Krouk, G.1    Tillard, P.2    Gojon, A.3
  • 18
    • 4544336507 scopus 로고    scopus 로고
    • Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1.
    • 10.1105/tpc.104.024380, 520944, 15319483
    • Muños S, Cazettes C, Fizames C, Gaymard F, Tillard P, Lepetit M, Lejay L, Gojon A. Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. Plant Cell 2004, 16:2433-2447. 10.1105/tpc.104.024380, 520944, 15319483.
    • (2004) Plant Cell , vol.16 , pp. 2433-2447
    • Muños, S.1    Cazettes, C.2    Fizames, C.3    Gaymard, F.4    Tillard, P.5    Lepetit, M.6    Lejay, L.7    Gojon, A.8
  • 19
    • 70349206303 scopus 로고    scopus 로고
    • A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1.
    • 10.1104/pp.109.140434, 2735993, 19633234
    • Wang R, Xing X, Wang Y, Tran A, Crawford NM. A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1. Plant Physiol 2009, 151:472-478. 10.1104/pp.109.140434, 2735993, 19633234.
    • (2009) Plant Physiol , vol.151 , pp. 472-478
    • Wang, R.1    Xing, X.2    Wang, Y.3    Tran, A.4    Crawford, N.M.5
  • 20
    • 70249134972 scopus 로고    scopus 로고
    • CHL1 functions as a nitrate sensor in plants.
    • 10.1016/j.cell.2009.07.004, 19766570
    • Ho CH, Lin SH, Hu HC, Tsay YF. CHL1 functions as a nitrate sensor in plants. Cell 2009, 138:1184-1194. 10.1016/j.cell.2009.07.004, 19766570.
    • (2009) Cell , vol.138 , pp. 1184-1194
    • Ho, C.H.1    Lin, S.H.2    Hu, H.C.3    Tsay, Y.F.4
  • 21
    • 58349088076 scopus 로고    scopus 로고
    • AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response.
    • 10.1111/j.1365-313X.2008.03685.x, 18798873
    • Hu HC, Wang YY, Tsay YF. AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response. Plant J 2009, 57:264-278. 10.1111/j.1365-313X.2008.03685.x, 18798873.
    • (2009) Plant J , vol.57 , pp. 264-278
    • Hu, H.C.1    Wang, Y.Y.2    Tsay, Y.F.3
  • 23
    • 73249138781 scopus 로고    scopus 로고
    • Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis.
    • 10.1105/tpc.109.067041, 2798321, 19933203
    • Rubin G, Tohge T, Matsuda F, Saito K, Scheible WR. Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell 2009, 21:3567-3584. 10.1105/tpc.109.067041, 2798321, 19933203.
    • (2009) Plant Cell , vol.21 , pp. 3567-3584
    • Rubin, G.1    Tohge, T.2    Matsuda, F.3    Saito, K.4    Scheible, W.R.5
  • 24
    • 0032536001 scopus 로고    scopus 로고
    • An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.
    • 10.1126/science.279.5349.407, 9430595
    • Zhang H, Forde BG. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Science 1998, 279:407-409. 10.1126/science.279.5349.407, 9430595.
    • (1998) Science , vol.279 , pp. 407-409
    • Zhang, H.1    Forde, B.G.2
  • 26
    • 34247235591 scopus 로고    scopus 로고
    • The effect of Glc6P uptake and its subsequent oxidation within pea root plastids on nitrite reduction and glutamate synthesis.
    • 10.1093/jxb/erl269, 17220512
    • Bowsher CG, Lacey AE, Hanke GT, Clarkson DT, Saker LR, Stulen I, Emes MJ. The effect of Glc6P uptake and its subsequent oxidation within pea root plastids on nitrite reduction and glutamate synthesis. J Exp Bot 2007, 58:1109-1118. 10.1093/jxb/erl269, 17220512.
    • (2007) J Exp Bot , vol.58 , pp. 1109-1118
    • Bowsher, C.G.1    Lacey, A.E.2    Hanke, G.T.3    Clarkson, D.T.4    Saker, L.R.5    Stulen, I.6    Emes, M.J.7
  • 27
    • 48549089667 scopus 로고    scopus 로고
    • Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis.
    • 10.1104/pp.107.114710, 2287369, 18305209
    • Lejay L, Wirth J, Pervent M, Cross JM, Tillard P, Gojon A. Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiol 2008, 146:2036-2053. 10.1104/pp.107.114710, 2287369, 18305209.
    • (2008) Plant Physiol , vol.146 , pp. 2036-2053
    • Lejay, L.1    Wirth, J.2    Pervent, M.3    Cross, J.M.4    Tillard, P.5    Gojon, A.6
  • 28
    • 36348952053 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA.
    • 10.1007/s11103-007-9241-0, 17885809
    • Peng M, Bi YM, Zhu T, Rothstein SJ. Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. Plant Mol Biol 2007, 65:775-797. 10.1007/s11103-007-9241-0, 17885809.
    • (2007) Plant Mol Biol , vol.65 , pp. 775-797
    • Peng, M.1    Bi, Y.M.2    Zhu, T.3    Rothstein, S.J.4
  • 29
    • 33746777825 scopus 로고    scopus 로고
    • Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses.
    • 10.1016/j.cell.2006.05.050, 16901781
    • Nemhauser JL, Hong F, Chory J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell 2006, 126:467-475. 10.1016/j.cell.2006.05.050, 16901781.
    • (2006) Cell , vol.126 , pp. 467-475
    • Nemhauser, J.L.1    Hong, F.2    Chory, J.3
  • 31
    • 78951494457 scopus 로고    scopus 로고
    • Reverse engineering of gene regulatory networks.
    • Cambridge MA: MIT Press, Lawrence N, Girolami M, Rattray M, Sanguinetti G
    • Jaeger J, Monk N. Reverse engineering of gene regulatory networks. Learning and Inference in Computational Systems Biology 2010, Cambridge MA: MIT Press, Lawrence N, Girolami M, Rattray M, Sanguinetti G.
    • (2010) Learning and Inference in Computational Systems Biology
    • Jaeger, J.1    Monk, N.2
  • 33
    • 33747813561 scopus 로고    scopus 로고
    • The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.
    • 10.1186/gb-2006-7-5-r36, 1779511, 16686963
    • Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V. The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biol 2006, 7:R36. 10.1186/gb-2006-7-5-r36, 1779511, 16686963.
    • (2006) Genome Biol , vol.7
    • Bonneau, R.1    Reiss, D.J.2    Shannon, P.3    Facciotti, M.4    Hood, L.5    Baliga, N.S.6    Thorsson, V.7
  • 34
    • 33750016109 scopus 로고    scopus 로고
    • Inferring gene regulatory networks from multiple microarray datasets.
    • 10.1093/bioinformatics/btl396, 16864593
    • Wang Y, Joshi T, Zhang XS, Xu D, Chen L. Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics 2006, 22:2413-2420. 10.1093/bioinformatics/btl396, 16864593.
    • (2006) Bioinformatics , vol.22 , pp. 2413-2420
    • Wang, Y.1    Joshi, T.2    Zhang, X.S.3    Xu, D.4    Chen, L.5
  • 35
    • 66749164082 scopus 로고    scopus 로고
    • Recursive regularization for inferring gene networks from time-course gene expression profiles.
    • 10.1186/1752-0509-3-41, 2686685, 19386091
    • Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S. Recursive regularization for inferring gene networks from time-course gene expression profiles. BMC Syst Biol 2009, 3:41. 10.1186/1752-0509-3-41, 2686685, 19386091.
    • (2009) BMC Syst Biol , vol.3 , pp. 41
    • Shimamura, T.1    Imoto, S.2    Yamaguchi, R.3    Fujita, A.4    Nagasaki, M.5    Miyano, S.6
  • 37
    • 13844253637 scopus 로고    scopus 로고
    • A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.
    • 10.1093/bioinformatics/bti014, 15353451
    • Beal M, Falciani F, Ghahramani Z, Rangel C, Wild D. A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics 2005, 21:349-356. 10.1093/bioinformatics/bti014, 15353451.
    • (2005) Bioinformatics , vol.21 , pp. 349-356
    • Beal, M.1    Falciani, F.2    Ghahramani, Z.3    Rangel, C.4    Wild, D.5
  • 38
    • 78951494606 scopus 로고    scopus 로고
    • Inferring transcriptional networks using prior biological knowledge and constrained state-space models.
    • Cambridge: MIT Press, Lawrence ND, Girolami M, Rattray M, Sanguinetti G
    • Angus J, Beal M, Li J, Rangel C, Wild D. Inferring transcriptional networks using prior biological knowledge and constrained state-space models. Learning and Inference in Computational Systems Biology 2010, 117-152. Cambridge: MIT Press, Lawrence ND, Girolami M, Rattray M, Sanguinetti G.
    • (2010) Learning and Inference in Computational Systems Biology , pp. 117-152
    • Angus, J.1    Beal, M.2    Li, J.3    Rangel, C.4    Wild, D.5
  • 39
    • 77950422238 scopus 로고    scopus 로고
    • An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis.
    • 10.1186/1752-0509-4-37, 2867773, 20356371
    • Zhang Y, Hatch KA, Bacon J, Wernisch L. An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis. BMC Syst Biol 2010, 4:37. 10.1186/1752-0509-4-37, 2867773, 20356371.
    • (2010) BMC Syst Biol , vol.4 , pp. 37
    • Zhang, Y.1    Hatch, K.A.2    Bacon, J.3    Wernisch, L.4
  • 40
    • 0034791625 scopus 로고    scopus 로고
    • Modeling genetic regulatory dynamic in neural development.
    • 10.1089/106652701752236223, 11571076
    • Wahde M, Hertz J. Modeling genetic regulatory dynamic in neural development. J Comput Biol 2001, 8:429-442. 10.1089/106652701752236223, 11571076.
    • (2001) J Comput Biol , vol.8 , pp. 429-442
    • Wahde, M.1    Hertz, J.2
  • 41
    • 66349115724 scopus 로고    scopus 로고
    • Grouped graphical Granger modeling for gene expression regulatory networks discovery.
    • 10.1093/bioinformatics/btp199, 2687953, 19477976
    • Lozano AC, Abe N, Liu Y, Rosset S. Grouped graphical Granger modeling for gene expression regulatory networks discovery. Bioinformatics 2009, 25:i110-118. 10.1093/bioinformatics/btp199, 2687953, 19477976.
    • (2009) Bioinformatics , vol.25
    • Lozano, A.C.1    Abe, N.2    Liu, Y.3    Rosset, S.4
  • 43
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the elastic net.
    • Zhu H, Hastie T. Regularization and variable selection via the elastic net. J R Stat Soc 2005, 67:301-320.
    • (2005) J R Stat Soc , vol.67 , pp. 301-320
    • Zhu, H.1    Hastie, T.2
  • 44
    • 0001287271 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso.
    • Tibshirani R. Regression shrinkage and selection via the lasso. J R Stat Soc 2006, 58:267-288.
    • (2006) J R Stat Soc , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 45
    • 42149177744 scopus 로고    scopus 로고
    • The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis.
    • 10.1007/s11103-008-9310-z, 2295252, 18278578
    • Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P. The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol Biol 2008, 67:183-195. 10.1007/s11103-008-9310-z, 2295252, 18278578.
    • (2008) Plant Mol Biol , vol.67 , pp. 183-195
    • Schwarz, S.1    Grande, A.V.2    Bujdoso, N.3    Saedler, H.4    Huijser, P.5
  • 46
    • 68749095252 scopus 로고    scopus 로고
    • MiR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana.
    • 10.1016/j.cell.2009.06.014, 19703399
    • Wang JW, Czech B, Weigel D. miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell 2009, 138:738-749. 10.1016/j.cell.2009.06.014, 19703399.
    • (2009) Cell , vol.138 , pp. 738-749
    • Wang, J.W.1    Czech, B.2    Weigel, D.3
  • 47
    • 68749100821 scopus 로고    scopus 로고
    • The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis.
    • 10.1016/j.cell.2009.06.031, 2732587, 19703400
    • Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 2009, 138:750-759. 10.1016/j.cell.2009.06.031, 2732587, 19703400.
    • (2009) Cell , vol.138 , pp. 750-759
    • Wu, G.1    Park, M.Y.2    Conway, S.R.3    Wang, J.W.4    Weigel, D.5    Poethig, R.S.6
  • 48
    • 54949093292 scopus 로고    scopus 로고
    • Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana.
    • 10.1105/tpc.108.058180, 2438454, 18492871
    • Wang JW, Schwab R, Czech B, Mica E, Weigel D. Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell 2008, 20:1231-1243. 10.1105/tpc.108.058180, 2438454, 18492871.
    • (2008) Plant Cell , vol.20 , pp. 1231-1243
    • Wang, J.W.1    Schwab, R.2    Czech, B.3    Mica, E.4    Weigel, D.5
  • 49
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing.
    • 10.1104/pp.109.139139, 2705054, 19465578
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR. Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 2009, 150:1541-1555. 10.1104/pp.109.139139, 2705054, 19465578.
    • (2009) Plant Physiol , vol.150 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 50
    • 71049136041 scopus 로고    scopus 로고
    • Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing.
    • 10.1104/pp.109.147280, 2785986, 19854858
    • Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ. Uncovering small RNA-mediated responses to phosphate-deficiency in Arabidopsis by deep sequencing. Plant Physiol 2009, 151:2120-2132. 10.1104/pp.109.147280, 2785986, 19854858.
    • (2009) Plant Physiol , vol.151 , pp. 2120-2132
    • Hsieh, L.C.1    Lin, S.I.2    Shih, A.C.3    Chen, J.W.4    Lin, W.Y.5    Tseng, C.Y.6    Li, W.H.7    Chiou, T.J.8
  • 51
    • 84976630546 scopus 로고    scopus 로고
    • R project website.
    • R project website. , http://www.r-project.org/
  • 52
    • 80052497665 scopus 로고    scopus 로고
    • MeV software.
    • MeV software. , http://www.tm4.org/mev.html
  • 53
    • 0035024021 scopus 로고    scopus 로고
    • Validating clustering for gene expression data.
    • 10.1093/bioinformatics/17.4.309, 11301299
    • Yeung KY, Haynor DR, Ruzzo WL. Validating clustering for gene expression data. Bioinformatics 2001, 17:309-318. 10.1093/bioinformatics/17.4.309, 11301299.
    • (2001) Bioinformatics , vol.17 , pp. 309-318
    • Yeung, K.Y.1    Haynor, D.R.2    Ruzzo, W.L.3
  • 54
    • 85082788784 scopus 로고    scopus 로고
    • Source code for SSM.
    • Source code for SSM. , http://cs.nyu.edu/~mirowski/Publications_en.html


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.