Positive selection pressure within teleost toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish

Molecular Biology Reports

Volumn 39, Issue 9, 2012, Pages 8965-8975

  Sundaram, Arvind Y M ^a   Consuegra, Sonia ^b   Kiron, Viswanath ^a   Fernandes, Jorge M O ^a  

^a NORD UNIVERSITY   (Norway)

^b ABERYSTWYTH UNIVERSITY   (United Kingdom)

Author keywords

Innate immunity; Positive selection; Teleost fish; Tlr22; Toll like receptor

Indexed keywords

LIPOPOLYSACCHARIDE; PEPTIDOGLYCAN; POLYINOSINIC POLYCYTIDYLIC ACID;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; ATLANTIC SALMON; CLADISTICS; CONTROLLED STUDY; EMBRYO; GENE; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE LOCUS; GENETIC SELECTION; HOST PATHOGEN INTERACTION; HOST RESISTANCE; IMMUNOSTIMULATION; INNATE IMMUNITY; KIDNEY; LARVAL DEVELOPMENT; LARVAL STAGE; MOLECULAR EVOLUTION; MOLECULAR RECOGNITION; NONHUMAN; PHYLOGENETIC TREE; POSITIVE SELECTION PRESSURE; SPLEEN; TELEOST; TEMPERATURE STRESS; TISSUE DISTRIBUTION; TLR21 GENE; TLR22 GENE; TLR23 GENE; ZEBRA FISH;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANIMALS; EVOLUTION, MOLECULAR; FEMALE; FISHES; GENE EXPRESSION REGULATION; MALE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PHYLOGENY; PROTEIN CONFORMATION; SELECTION, GENETIC; SEQUENCE ALIGNMENT; STRESS, PHYSIOLOGICAL; TEMPERATURE; TOLL-LIKE RECEPTORS; ZEBRAFISH;

AVES; DANIO RERIO; MAMMALIA; SALMO SALAR; TELEOSTEI;

EID: 84865153588     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-1765-y     Document Type: Article

References (53)

1. Smith VJ, Fernandes JMO (2009) Antimicrobial peptides of the innate immune system. In: Zaccone G, Perriere C, Mathis A, Kapoor BG (eds) Fish defences: pathogens, parasites and predators. Science Publishers, USA, pp 241-276. doi: 10.1201/b10188-9
2. Janeway CA Jr, Medzhitov R (2002) Innate immune recognition. Annu Rev Immunol 20:197-216. doi: 10.1146/annurev.immunol.20.083001.084359 (Pubitemid 34293424)
3. Medzhitov R, Janeway CA Jr (1998) Innate immune recognition and control of adaptive immune responses. Semin Immunol 10(5):351-353. doi: 10.1006/smim.1998.0136 (Pubitemid 28499548)
4. Kumar H, Kawai T, Akira S (2009) Toll-like receptors and innate immunity. Biochem Biophys Res Commun 388(4):621-625. doi: 10.1016/j.bbrc.2009.08.062
5. Medzhitov R (2007) Recognition of microorganisms and activation of the immune response. Nature 449(7164):819-826. doi: 10.1038/nature06246 (Pubitemid 47598622)
6. Akira S, Uematsu S, Takeuchi O (2006) Pathogen recognition and innate immunity. Cell 124(4):783-801. doi: 10.1016/j.cell.2006.02.015 (Pubitemid 43261452)
7. Jin MS, Lee JO (2008) Structures of the toll-like receptor family and its ligand complexes. Immunity 29(2):182-191. doi: 10.1016/j.immuni.2008.07.007
8. Kawai T, Akira S (2010) The role of pattern-recognition receptors in innate immunity: update on toll-like receptors. Nat Immunol 11(5):373-384. doi: 10.1038/ni.1863
9. Hashimoto C, Hudson KL, Anderson KV (1988) The Toll gene of drosophila, required for dorsal-ventral embryonic polarity, appears to encode a transmembrane protein. Cell 52(2):269-279. doi: 10.1016/0092-8674(88)90516-8
10. Lemaitre B, Nicolas E, Michaut L, Reichhart JM, Hoffmann JA (1996) The dorsoventral regulatory gene cassette spatzle/Toll/cactus controls the potent antifungal response in Drosophila adults. Cell 86(6):973-983. doi: 10.1016/S0092-8674(00)80172-5 (Pubitemid 26336801)
11. Roach JC, Glusman G, Rowen L, Kaur A, Purcell MK, Smith KD, Hood LE, Aderem A (2005) The evolution of vertebrate toll-like receptors. Proc Natl Acad Sci USA 102(27):9577-9582. doi: 10.1073/pnas.0502272102 (Pubitemid 40981723)
12. Brownlie R, Allan B (2011) Avian toll-like receptors. Cell Tissue Res 343(1):121-130. doi: 10.1007/s00441-010-1026-0
13. Rebl A, Goldammer T, Seyfert HM (2010) Toll-like receptor signaling in bony fish. Vet Immunol Immunopathol 134(3-4):139-150. doi: 10.1016/j.vetimm. 2009.09.021
14. Wlasiuk G, Nachman MW (2010) Adaptation and constraint at toll-like receptors in primates. Mol Biol Evol 27(9):2172-2186. doi: 10.1093/molbev/msq104
15. Cormican P, Lloyd AT, Downing T, Connell SJ, Bradley D, O'Farrelly C (2009) The avian Toll-Like receptor pathway-subtle differences amidst general conformity. Dev Comp Immunol 33(9):967-973. doi: 10.1016/j.dci.2009.04.001
16. Chen JS, Wang TY, Tzeng TD, Wang CY, Wang D (2008) Evidence for positive selection in the TLR9 gene of teleosts. Fish Shellfish Immunol 24(2):234-242. doi: 10.1016/j.fsi.2007.11.005
17. Novoa B, Figueras A (2012) Zebrafish: model for the study of inflammation and the innate immune response to infectious diseases. Adv Exp Med Biol 946:253-275. doi: 10.1007/978-1-4614-0106-3-15
18. Guindon S, Delsuc F, Dufayard JF, Gascuel O (2009) Estimating maximum likelihood phylogenies with PhyML. Methods Mol Biol 537:113-137. doi: 10.1007/978-1-59745-251-9-6
19. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12):1572-1574. doi: 10.1093/bioinformatics/btg180 (Pubitemid 37038874)
20. Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24(8):1586-1591. doi: 10.1093/molbev/msm088 (Pubitemid 47236688)
21. Fernandes JM, Ruangsri J, Kiron V (2010) Atlantic cod piscidin and its diversification through positive selection. PLoS One 5(3):e9501. doi: 10.1371/journal.pone.0009501
22. Consuegra S, Megens HJ, Leon K, Stet RJM, Jordan WC (2005) Patterns of variability at the major histocompatibility class II alpha locus in Atlantic salmon contrast with those at the class I locus. Immunogenetics 57(1):16-24. doi: 10.1007/s00251-004-0765-z (Pubitemid 40591243)
23. Sarropoulou E, Fernandes JMO, Mitter K, Magoulas A, Mulero V, Sepulcre MP, Figueras A, Novoa B, Kotoulas G (2010) Evolution of a multifunctional gene: the warm temperature acclimation protein Wap65 in the European seabass Dicentrarchus labrax. Mol Phylogenet Evol 55(2):640-649. doi: 10.1016/j.ympev.2009.10.001
24. Delport W, Poon AFY, Frost SDW, Kosakovsky Pond SL (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26(19):2455-2457. doi: 10.1093/bioinformatics/btq429
25. Campos C, Valente LMP, Fernandes JMO (2012) Molecular evolution of zebrafish dnmt3 genes and thermal plasticity of their expression during embryonic development. Gene 500(1):93-100. doi: 10.1016/j.gene.2012.03.041
26. Novoa B, Bowman TV, Zon L, Figueras A (2009) LPS response and tolerance in the zebrafish (Danio rerio). Fish Shellfish Immunol 26(2):326-331. doi: 10.1016/j.fsi.2008.12.004
27. Johansen A, Collet B, Sandaker E, Secombes CJ, Jørgensen JB (2004) Quantification of Atlantic salmon type-I interferon using an Mx1 promoter reporter gene assay. Fish Shellfish Immunol 16(2):173-184. doi: 10.1016/s1050-4648(03)00060-3 (Pubitemid 38231243)
28. Campos C, Valente LMP, Borges P, Bizuayehu T, Fernandes JMO (2010) Dietary lipid levels have a remarkable impact on the expression of growth-related genes in Senegalese sole (Solea senegalensis Kaup). J Exp Biol 213(2):200-209. doi: 10.1242/jeb.033126
29. Wheelan SJ, Church DM, Ostell JM (2001) Spidey: a tool for mRNA-to-genomic alignments. Genome Res 11(11):1952-1957. doi: 10.1101/gr.195301 (Pubitemid 33100436)
30. Fernandes JM, Mommens M, Hagen O, Babiak I, Solberg C (2008) Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development. Comp Biochem Physiol B Biochem Mol Biol 150(1):23-32. doi: 10.1016/j.cbpb.2008.01.003
31. Pfaffl MW, Horgan GW, Dempfle L (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30(9):e36. doi: 10.1093/nar/30.9.e36
32. Kobe B, Kajava AV (2001) The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 11(6):725-732. doi: 10.1016/s0959-440x(01)00266-4 (Pubitemid 34076634)
33. Matsushima N, Tanaka T, Enkhbayar P, Mikami T, Taga M, Yamada K, Kuroki Y (2007) Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors. BMC Genomics 8:124-143. doi: 10.1186/1471-2164-8-124 (Pubitemid 46995052)
34. Bell JK, Mullen GED, Leifer CA, Mazzoni A, Davies DR, Segal DM (2003) Leucine-rich repeats and pathogen recognition in toll-like receptors. Trends Immunol 24(10):528-533. doi: 10.1016/s1471-4906(03)00242-4 (Pubitemid 37205203)
35. Bell JK, Botos I, Hall PR, Askins J, Shiloach J, Segal DM, Davies DR (2005) The molecular structure of the Toll-like receptor 3 ligand-binding domain. Proc Natl Acad Sci USA 102(31):10976-10980. doi: 10.1073/pnas.0505077102 (Pubitemid 41105978)
36. Palti Y (2011) Toll-like receptors in bony fish: from genomics to function. Dev Comp Immunol 35(12):1263-1272. doi: 10.1016/j.dci.2011.03.006
37. Leong J, Jantzen S, von Schalburg K, Cooper G, Messmer A, Liao N, Munro S, Moore R, Holt R, Jones S, Davidson W, Koop B (2010) Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. BMC Genomics 11(1):279-295. doi: 10.1186/1471-2164-11-279
38. Yang Z, Wong WS, Nielsen R (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 22(4):1107-1118. doi: 10.1093/molbev/msi097 (Pubitemid 40471423)
39. Park S, Park D, Jung Y-J, Chung E, Choi S (2010) Positive selection signatures in the TLR7 family. Genes Genomics 32(2):143-150. doi: 10.1007/s13258-009-0837-4
40. Areal H, Abrantes J, Esteves P (2011) Signatures of positive selection in Toll-like receptor (TLR) genes in mammals. BMC Evol Bio 11(1):368. doi: 10.1186/1471-2148-11-368
41. Werling D, Jann OC, Offord V, Glass EJ, Coffey TJ (2009) Variation matters: TLR structure and species-specific pathogen recognition. Trends Immunol 30(3):124-130. doi: 10.1016/j.it.2008.12.001
42. John T (2011) The MHC, disease and selection. Immunol Lett 137(1-2):1-8. doi: 10.1016/j.imlet.2011.01.002
43. Rebl A, Siegl E, Köllner B, Fischer U, Seyfert H-M (2007) Characterization of twin toll-like receptors from rainbow trout (Oncorhynchus mykiss): evolutionary relationship and induced expression by Aeromonas salmonicida salmonicida. Dev Comp Immunol 31(5):499-510. doi: 10.1016/j.dci.2006.08.007 (Pubitemid 46127706)
44. Stafford JL, Ellestad KK, Magor KE, Belosevic M, Magor BG (2003) A toll-like receptor (TLR) gene that is up-regulated in activated goldfish macrophages. Dev Comp Immunol 27(8):685-698. doi: 10.1016/s0145-305x(03)00041-7 (Pubitemid 36683070)
45. Xiao X, Qin Q, Chen X (2011) Molecular characterization of a toll-like receptor 22 homologue in large yellow croaker (Pseudosciaena crocea) and promoter activity analysis of its 5′-flanking sequence. Fish Shellfish Immunol 30(1):224-233. doi: 10.1016/j.fsi.2010.10.014
46. Oshiumi H, Tsujita T, Shida K, Matsumoto M, Ikeo K, Seya T (2003) Prediction of the prototype of the human Toll-like receptor gene family from the pufferfish, Fugu rubripes, genome. Immunogenetics 54(11):791-800. doi: 10.1007/s00251-002-0519-8 (Pubitemid 36384474)
47. Nishimura M, Naito S (2005) Tissue-specific mRNA expression profiles of human toll-like receptors and related genes. Biol Pharm Bull 28(5):886-892. doi: 10.1248/bpb.28.886 (Pubitemid 40740661)
48. Baoprasertkul P, Xu P, Peatman E, Kucuktas H, Liu Z (2007) Divergent toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21. Fish Shellfish Immunol 23(6):1218-1230. doi: 10.1016/j.fsi.2007.06.002 (Pubitemid 350047545)
49. Watzke J, Schirmer K, Scholz S (2007) Bacterial lipopolysaccharides induce genes involved in the innate immune response in embryos of the zebrafish (Danio rerio). Fish Shellfish Immunol 23(4):901-905. doi: 10.1016/j.fsi.2007.03. 004 (Pubitemid 47199064)
50. Brownlie R, Zhu J, Allan B, Mutwiri GK, Babiuk LA, Potter A, Griebel P (2009) Chicken TLR21 acts as a functional homologue to mammalian TLR9 in the recognition of CpG oligodeoxynucleotides. Mol Immunol 46(15):3163-3170. doi: 10.1016/j.molimm.2009.06.002
51. Hirono I, Takami M, Miyata M, Miyazaki T, Han H-J, Takano T, Endo M, Aoki T (2004) Characterization of gene structure and expression of two toll-like receptors from Japanese flounder, Paralichthys olivaceus. Immunogenetics 56(1):38-46. doi: 10.1007/s00251-004-0657-2 (Pubitemid 38626420)
52. Matsuo A, Oshiumi H, Tsujita T, Mitani H, Kasai H, Yoshimizu M, Matsumoto M, Seya T (2008) Teleost TLR22 recognizes RNA duplex to induce IFN and protect cells from birnaviruses. J Immunol 181(5):3474-3485
53. Meijer AH, Gabby Krens SF, Medina Rodriguez IA, He S, Bitter W, Ewa Snaar-Jagalska B, Spaink HP (2004) Expression analysis of the toll-like receptor and TIR domain adaptor families of zebrafish. Mol Immunol 40(11):773-783. doi: 10.1016/j.molimm.2003.10.003 (Pubitemid 37542427)