메뉴 건너뛰기




Volumn 12, Issue 2, 2012, Pages 233-245

An atlas of the Epstein-Barr virus transcriptome and epigenome reveals host-virus regulatory interactions

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR PAX5; TRANSCRIPTOME; VIRUS PROTEIN;

EID: 84865137988     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2012.06.008     Document Type: Article
Times cited : (199)

References (69)
  • 3
    • 77955982402 scopus 로고    scopus 로고
    • Epstein-Barr virus infection and multiple sclerosis: A review
    • A. Ascherio, and K.L. Munger Epstein-Barr virus infection and multiple sclerosis: a review J. Neuroimmune Pharmacol. 5 2010 271 277
    • (2010) J. Neuroimmune Pharmacol. , vol.5 , pp. 271-277
    • Ascherio, A.1    Munger, K.L.2
  • 4
    • 0023896618 scopus 로고
    • Complex transcription of the Epstein-Barr virus BamHI fragment H rightward open reading frame 1 (BHRF1) in latently and lytically infected B lymphocytes
    • P.J. Austin, E. Flemington, C.N. Yandava, J.L. Strominger, and S.H. Speck Complex transcription of the Epstein-Barr virus BamHI fragment H rightward open reading frame 1 (BHRF1) in latently and lytically infected B lymphocytes Proc. Natl. Acad. Sci. USA 85 1988 3678 3682
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3678-3682
    • Austin, P.J.1    Flemington, E.2    Yandava, C.N.3    Strominger, J.L.4    Speck, S.H.5
  • 5
    • 28844444995 scopus 로고    scopus 로고
    • Transformation of BCR-deficient germinal-center B cells by EBV supports a major role of the virus in the pathogenesis of Hodgkin and posttransplantation lymphomas
    • DOI 10.1182/blood-2005-06-2342
    • D. Bechtel, J. Kurth, C. Unkel, and R. Küppers Transformation of BCR-deficient germinal-center B cells by EBV supports a major role of the virus in the pathogenesis of Hodgkin and posttransplantation lymphomas Blood 106 2005 4345 4350 (Pubitemid 41775946)
    • (2005) Blood , vol.106 , Issue.13 , pp. 4345-4350
    • Bechtel, D.1    Kurth, J.2    Unkel, C.3    Kuppers, R.4
  • 13
    • 77649188072 scopus 로고    scopus 로고
    • Cellular factors associated with latency and spontaneous Epstein-Barr virus reactivation in B-lymphoblastoid cell lines
    • M.L. Davies, S. Xu, J. Lyons-Weiler, A. Rosendorff, S.A. Webber, L.R. Wasil, D. Metes, and D.T. Rowe Cellular factors associated with latency and spontaneous Epstein-Barr virus reactivation in B-lymphoblastoid cell lines Virology 400 2010 53 67
    • (2010) Virology , vol.400 , pp. 53-67
    • Davies, M.L.1    Xu, S.2    Lyons-Weiler, J.3    Rosendorff, A.4    Webber, S.A.5    Wasil, L.R.6    Metes, D.7    Rowe, D.T.8
  • 14
    • 79958106597 scopus 로고    scopus 로고
    • The replisome pausing factor Timeless is required for episomal maintenance of latent Epstein-Barr virus
    • J. Dheekollu, and P.M. Lieberman The replisome pausing factor Timeless is required for episomal maintenance of latent Epstein-Barr virus J. Virol. 85 2011 5853 5863
    • (2011) J. Virol. , vol.85 , pp. 5853-5863
    • Dheekollu, J.1    Lieberman, P.M.2
  • 15
    • 63149089891 scopus 로고    scopus 로고
    • Identifying sites bound by Epstein-Barr virus nuclear antigen 1 (EBNA1) in the human genome: Defining a position-weighted matrix to predict sites bound by EBNA1 in viral genomes
    • L.R. Dresang, D.T. Vereide, and B. Sugden Identifying sites bound by Epstein-Barr virus nuclear antigen 1 (EBNA1) in the human genome: defining a position-weighted matrix to predict sites bound by EBNA1 in viral genomes J. Virol. 83 2009 2930 2940
    • (2009) J. Virol. , vol.83 , pp. 2930-2940
    • Dresang, L.R.1    Vereide, D.T.2    Sugden, B.3
  • 16
    • 40349106161 scopus 로고    scopus 로고
    • The landscape of human proteins interacting with viruses and other pathogens
    • M.D. Dyer, T.M. Murali, and B.W. Sobral The landscape of human proteins interacting with viruses and other pathogens PLoS Pathog. 4 2008 e32
    • (2008) PLoS Pathog. , vol.4 , pp. 32
    • Dyer, M.D.1    Murali, T.M.2    Sobral, B.W.3
  • 17
    • 79951737927 scopus 로고    scopus 로고
    • The distal V(H) gene cluster of the Igh locus contains distinct regulatory elements with Pax5 transcription factor-dependent activity in pro-B cells
    • A. Ebert, S. McManus, H. Tagoh, J. Medvedovic, G. Salvagiotto, M. Novatchkova, I. Tamir, A. Sommer, M. Jaritz, and M. Busslinger The distal V(H) gene cluster of the Igh locus contains distinct regulatory elements with Pax5 transcription factor-dependent activity in pro-B cells Immunity 34 2011 175 187
    • (2011) Immunity , vol.34 , pp. 175-187
    • Ebert, A.1    McManus, S.2    Tagoh, H.3    Medvedovic, J.4    Salvagiotto, G.5    Novatchkova, M.6    Tamir, I.7    Sommer, A.8    Jaritz, M.9    Busslinger, M.10
  • 18
    • 39749113080 scopus 로고    scopus 로고
    • Clonal integration of a polyomavirus in human Merkel cell carcinoma
    • DOI 10.1126/science.1152586
    • H. Feng, M. Shuda, Y. Chang, and P.S. Moore Clonal integration of a polyomavirus in human Merkel cell carcinoma Science 319 2008 1096 1100 (Pubitemid 351300792)
    • (2008) Science , vol.319 , Issue.5866 , pp. 1096-1100
    • Feng, H.1    Shuda, M.2    Chang, Y.3    Moore, P.S.4
  • 19
    • 0028932082 scopus 로고
    • An EBNA-1-dependent enhancer acts from a distance of 10 kilobase pairs to increase expression of the Epstein-Barr virus LMP gene
    • T.A. Gahn, and B. Sugden An EBNA-1-dependent enhancer acts from a distance of 10 kilobase pairs to increase expression of the Epstein-Barr virus LMP gene J. Virol. 69 1995 2633 2636
    • (1995) J. Virol. , vol.69 , pp. 2633-2636
    • Gahn, T.A.1    Sugden, B.2
  • 21
    • 0024347503 scopus 로고
    • The transforming prototype of Epstein-Barr virus (B95-8) is also a lytic virus
    • R. Glaser, K.L. Tarr, and A.W. Dangel The transforming prototype of Epstein-Barr virus (B95-8) is also a lytic virus Int. J. Cancer 44 1989 95 100 (Pubitemid 19184684)
    • (1989) International Journal of Cancer , vol.44 , Issue.1 , pp. 95-100
    • Glaser, R.1    Tarr, K.L.2    Dangel, A.W.3
  • 22
    • 77954688337 scopus 로고    scopus 로고
    • The epigenetic landscape of latent Kaposi sarcoma-associated herpesvirus genomes
    • T. Günther, and A. Grundhoff The epigenetic landscape of latent Kaposi sarcoma-associated herpesvirus genomes PLoS Pathog. 6 2010 e1000935
    • (2010) PLoS Pathog. , vol.6 , pp. 1000935
    • Günther, T.1    Grundhoff, A.2
  • 24
    • 0020604815 scopus 로고
    • Epstein-Barr virus (EBV) induced polyclonal and monoclonal B-cell lymphoproliferative diseases occurring after renal transplantation. Clinical, pathologic, and virologic findings and implications for therapy
    • D.W. Hanto, K.J. Gajl-Peczalska, G. Frizzera, D.C. Arthur, H.H. Balfour Jr., K. McClain, R.L. Simmons, and J.S. Najarian Epstein-Barr virus (EBV) induced polyclonal and monoclonal B-cell lymphoproliferative diseases occurring after renal transplantation. Clinical, pathologic, and virologic findings and implications for therapy Ann. Surg. 198 1983 356 369 (Pubitemid 13050829)
    • (1983) Annals of Surgery , vol.198 , Issue.3 , pp. 356-369
    • Hanto, D.W.1    Gajl Peczalska, K.J.2    Frizzera, G.3
  • 27
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • L.M. Iyer, S. Balaji, E.V. Koonin, and L. Aravind Evolutionary genomics of nucleo-cytoplasmic large DNA viruses Virus Res. 117 2006 156 184
    • (2006) Virus Res. , vol.117 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 29
    • 63449086437 scopus 로고    scopus 로고
    • An Epstein-Barr virus anti-apoptotic protein constitutively expressed in transformed cells and implicated in Burkitt lymphomagenesis: The Wp/BHRF1 link
    • G.L. Kelly, H.M. Long, J. Stylianou, W.A. Thomas, A. Leese, A.I. Bell, G.W. Bornkamm, J. Mautner, A.B. Rickinson, and M. Rowe An Epstein-Barr virus anti-apoptotic protein constitutively expressed in transformed cells and implicated in Burkitt lymphomagenesis: the Wp/BHRF1 link PLoS Pathog. 5 2009 e1000341
    • (2009) PLoS Pathog. , vol.5 , pp. 1000341
    • Kelly, G.L.1    Long, H.M.2    Stylianou, J.3    Thomas, W.A.4    Leese, A.5    Bell, A.I.6    Bornkamm, G.W.7    Mautner, J.8    Rickinson, A.B.9    Rowe, M.10
  • 30
    • 37549015263 scopus 로고    scopus 로고
    • Germinal centres: Role in B-cell physiology and malignancy
    • U. Klein, and R. Dalla-Favera Germinal centres: role in B-cell physiology and malignancy Nat. Rev. Immunol. 8 2008 22 33
    • (2008) Nat. Rev. Immunol. , vol.8 , pp. 22-33
    • Klein, U.1    Dalla-Favera, R.2
  • 31
    • 79956053726 scopus 로고    scopus 로고
    • Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis
    • B.-K. Lee, A.A. Bhinge, and V.R. Iyer Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis Nucleic Acids Res. 39 2011 3558 3573
    • (2011) Nucleic Acids Res. , vol.39 , pp. 3558-3573
    • Lee, B.-K.1    Bhinge, A.A.2    Iyer, V.R.3
  • 33
    • 33644863216 scopus 로고    scopus 로고
    • Chromatin regulation of virus infection
    • DOI 10.1016/j.tim.2006.01.001, PII S0966842X06000035
    • P.M. Lieberman Chromatin regulation of virus infection Trends Microbiol. 14 2006 132 140 (Pubitemid 43376052)
    • (2006) Trends in Microbiology , vol.14 , Issue.3 , pp. 132-140
    • Lieberman, P.M.1
  • 34
    • 78649427725 scopus 로고    scopus 로고
    • Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type i latency Burkitt's lymphoma cells
    • Z. Lin, G. Xu, N. Deng, C. Taylor, D. Zhu, and E.K. Flemington Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells J. Virol. 84 2010 13053 13058
    • (2010) J. Virol. , vol.84 , pp. 13053-13058
    • Lin, Z.1    Xu, G.2    Deng, N.3    Taylor, C.4    Zhu, D.5    Flemington, E.K.6
  • 35
    • 34249864763 scopus 로고    scopus 로고
    • The plasmid replicon of Epstein-Barr virus: Mechanistic insights into efficient, licensed, extrachromosomal replication in human cells
    • DOI 10.1016/j.plasmid.2007.01.003, PII S0147619X07000042
    • S.E. Lindner, and B. Sugden The plasmid replicon of Epstein-Barr virus: mechanistic insights into efficient, licensed, extrachromosomal replication in human cells Plasmid 58 2007 1 12 (Pubitemid 46874590)
    • (2007) Plasmid , vol.58 , Issue.1 , pp. 1-12
    • Lindner, S.E.1    Sugden, B.2
  • 38
    • 78650059562 scopus 로고    scopus 로고
    • A new model of Epstein-Barr virus infection reveals an important role for early lytic viral protein expression in the development of lymphomas
    • S.-D. Ma, S. Hegde, K.H. Young, R. Sullivan, D. Rajesh, Y. Zhou, E. Jankowska-Gan, W.J. Burlingham, X. Sun, and M.L. Gulley A new model of Epstein-Barr virus infection reveals an important role for early lytic viral protein expression in the development of lymphomas J. Virol. 85 2011 165 177
    • (2011) J. Virol. , vol.85 , pp. 165-177
    • Ma, S.-D.1    Hegde, S.2    Young, K.H.3    Sullivan, R.4    Rajesh, D.5    Zhou, Y.6    Jankowska-Gan, E.7    Burlingham, W.J.8    Sun, X.9    Gulley, M.L.10
  • 39
    • 28844502383 scopus 로고    scopus 로고
    • Rescue of "crippled" germinal center B cells from apoptosis by Epstein-Barr virus
    • DOI 10.1182/blood-2005-06-2341
    • C. Mancao, M. Altmann, B. Jungnickel, and W. Hammerschmidt Rescue of "crippled" germinal center B cells from apoptosis by Epstein-Barr virus Blood 106 2005 4339 4344 (Pubitemid 41775945)
    • (2005) Blood , vol.106 , Issue.13 , pp. 4339-4344
    • Mancao, C.1    Altmann, M.2    Jungnickel, B.3    Hammerschmidt, W.4
  • 40
    • 33745184853 scopus 로고    scopus 로고
    • Expression profiling of transcription factors Pax-5, Oct-1, Oct-2, BOB.1, and PU.1 in Hodgkin's and non-Hodgkin's lymphomas: A comparative study using high throughput tissue microarrays
    • R.C. McCune, S.I. Syrbu, and M.A. Vasef Expression profiling of transcription factors Pax-5, Oct-1, Oct-2, BOB.1, and PU.1 in Hodgkin's and non-Hodgkin's lymphomas: a comparative study using high throughput tissue microarrays Mod. Pathol. 19 2006 1010 1018
    • (2006) Mod. Pathol. , vol.19 , pp. 1010-1018
    • McCune, R.C.1    Syrbu, S.I.2    Vasef, M.A.3
  • 42
    • 78649489748 scopus 로고    scopus 로고
    • Why do viruses cause cancer? Highlights of the first century of human tumour virology
    • P.S. Moore, and Y. Chang Why do viruses cause cancer? Highlights of the first century of human tumour virology Nat. Rev. Cancer 10 2010 878 889
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 878-889
    • Moore, P.S.1    Chang, Y.2
  • 44
    • 33646413672 scopus 로고    scopus 로고
    • The global health burden of infection-associated cancers in the year 2002
    • D.M. Parkin The global health burden of infection-associated cancers in the year 2002 Int. J. Cancer 118 2006 3030 3044
    • (2006) Int. J. Cancer , vol.118 , pp. 3030-3044
    • Parkin, D.M.1
  • 50
    • 79952431682 scopus 로고    scopus 로고
    • Initiation of Epstein-Barr virus lytic replication requires transcription and the formation of a stable RNA-DNA hybrid molecule at OriLyt
    • A.J. Rennekamp, and P.M. Lieberman Initiation of Epstein-Barr virus lytic replication requires transcription and the formation of a stable RNA-DNA hybrid molecule at OriLyt J. Virol. 85 2011 2837 2850
    • (2011) J. Virol. , vol.85 , pp. 2837-2850
    • Rennekamp, A.J.1    Lieberman, P.M.2
  • 51
    • 77649209052 scopus 로고    scopus 로고
    • Augmented latent membrane protein 1 expression from Epstein-Barr virus episomes with minimal terminal repeats
    • A.M. Repic, M. Shi, R.S. Scott, and J.W. Sixbey Augmented latent membrane protein 1 expression from Epstein-Barr virus episomes with minimal terminal repeats J. Virol. 84 2010 2236 2244
    • (2010) J. Virol. , vol.84 , pp. 2236-2244
    • Repic, A.M.1    Shi, M.2    Scott, R.S.3    Sixbey, J.W.4
  • 53
  • 54
    • 64049099870 scopus 로고    scopus 로고
    • The intersection of Epstein-Barr virus with the germinal center
    • J.E. Roughan, and D.A. Thorley-Lawson The intersection of Epstein-Barr virus with the germinal center J. Virol. 83 2009 3968 3976
    • (2009) J. Virol. , vol.83 , pp. 3968-3976
    • Roughan, J.E.1    Thorley-Lawson, D.A.2
  • 56
    • 0028803804 scopus 로고
    • PU box-binding transcription factors and a POU domain protein cooperate in the Epstein-Barr virus (EBV) nuclear antigen 2-induced transactivation of the EBV latent membrane protein 1 promoter
    • A. Sjöblom, A. Jansson, W. Yang, S. Laín, T. Nilsson, and L. Rymo PU box-binding transcription factors and a POU domain protein cooperate in the Epstein-Barr virus (EBV) nuclear antigen 2-induced transactivation of the EBV latent membrane protein 1 promoter J. Gen. Virol. 76 1995 2679 2692
    • (1995) J. Gen. Virol. , vol.76 , pp. 2679-2692
    • Sjöblom, A.1    Jansson, A.2    Yang, W.3    Laín, S.4    Nilsson, T.5    Rymo, L.6
  • 57
    • 39449111307 scopus 로고    scopus 로고
    • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    • DOI 10.1038/emboj.2008.1, PII EMBOJ20081
    • W. Stedman, H. Kang, S. Lin, J.L. Kissil, M.S. Bartolomei, and P.M. Lieberman Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators EMBO J. 27 2008 654 666 (Pubitemid 351273124)
    • (2008) EMBO Journal , vol.27 , Issue.4 , pp. 654-666
    • Stedman, W.1    Kang, H.2    Lin, S.3    Kissil, J.L.4    Bartolomei, M.S.5    Lieberman, P.M.6
  • 59
    • 79959855149 scopus 로고    scopus 로고
    • Probing individual environmental bacteria for viruses by using microfluidic digital PCR
    • A.D. Tadmor, E.A. Ottesen, J.R. Leadbetter, and R. Phillips Probing individual environmental bacteria for viruses by using microfluidic digital PCR Science 333 2011 58 62
    • (2011) Science , vol.333 , pp. 58-62
    • Tadmor, A.D.1    Ottesen, E.A.2    Leadbetter, J.R.3    Phillips, R.4
  • 60
    • 77958134523 scopus 로고    scopus 로고
    • CTCF prevents the epigenetic drift of EBV latency promoter Qp
    • I. Tempera, A. Wiedmer, J. Dheekollu, and P.M. Lieberman CTCF prevents the epigenetic drift of EBV latency promoter Qp PLoS Pathog. 6 2010 e1001048
    • (2010) PLoS Pathog. , vol.6 , pp. 1001048
    • Tempera, I.1    Wiedmer, A.2    Dheekollu, J.3    Lieberman, P.M.4
  • 61
    • 79960960371 scopus 로고    scopus 로고
    • EBV latency types adopt alternative chromatin conformations
    • I. Tempera, M. Klichinsky, and P.M. Lieberman EBV latency types adopt alternative chromatin conformations PLoS Pathogens 7 2011 e1002180
    • (2011) PLoS Pathogens , vol.7 , pp. 1002180
    • Tempera, I.1    Klichinsky, M.2    Lieberman, P.M.3
  • 62
    • 1642334164 scopus 로고    scopus 로고
    • Persistence of the Epstein-Barr Virus and the Origins of Associated Lymphomas
    • DOI 10.1056/NEJMra032015
    • D.A. Thorley-Lawson, and A. Gross Persistence of the Epstein-Barr virus and the origins of associated lymphomas N. Engl. J. Med. 350 2004 1328 1337 (Pubitemid 38375368)
    • (2004) New England Journal of Medicine , vol.350 , Issue.13 , pp. 1328-1337
    • Thorley-Lawson, D.A.1    Gross, A.2
  • 63
    • 0033762242 scopus 로고    scopus 로고
    • The Epstein-Barr virus promoter initiating B-cell transformation is activated by RFX proteins and the B-cell-specific activator protein BSAP/Pax5
    • R. Tierney, H. Kirby, J. Nagra, A. Rickinson, and A. Bell The Epstein-Barr virus promoter initiating B-cell transformation is activated by RFX proteins and the B-cell-specific activator protein BSAP/Pax5 J. Virol. 74 2000 10458 10467
    • (2000) J. Virol. , vol.74 , pp. 10458-10467
    • Tierney, R.1    Kirby, H.2    Nagra, J.3    Rickinson, A.4    Bell, A.5
  • 64
  • 68
    • 4944266319 scopus 로고    scopus 로고
    • Epstein-Barr virus: 40 Years on
    • DOI 10.1038/nrc1452
    • L.S. Young, and A.B. Rickinson Epstein-Barr virus: 40 years on Nat. Rev. Cancer 4 2004 757 768 (Pubitemid 39331148)
    • (2004) Nature Reviews Cancer , vol.4 , Issue.10 , pp. 757-768
    • Young, L.S.1    Rickinson, A.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.