-
1
-
-
33747068248
-
Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray
-
DOI 10.1186/1743-422X-3-43
-
Bernasconi, M., C. Berger, J. A. Sigrist, A. Bonanomi, J. Sobek, F. K. Niggli, and D. Nadal. 2006. Quantitative profiling of housekeeping and Epstein- Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray. Virol. J. 3:43. (Pubitemid 44211798)
-
(2006)
Virology Journal
, vol.3
, pp. 43
-
-
Bernasconi, M.1
Berger, C.2
Sigrist, J.A.3
Bonanomi, A.4
Sobek, J.5
Niggli, F.K.6
Nadal, D.7
-
2
-
-
77955393112
-
Uncovering the complexity of transcriptomes with RNA-Seq
-
Costa, V., C. Angelini, I. De Feis, and A. Ciccodicola. 2010. Uncovering the complexity of transcriptomes with RNA-Seq. J. Biomed Biotechnol. 2010: 853916.
-
(2010)
J. Biomed Biotechnol.
, vol.2010
, pp. 853916
-
-
Costa, V.1
Angelini, C.2
De Feis, I.3
Ciccodicola, A.4
-
3
-
-
33744921669
-
The genome of Epstein-Barr virus type 2 strain AG876
-
Dolan, A., C. Addison, D. Gatherer, A. J. Davison, and D. J. McGeoch. 2006. The genome of Epstein-Barr virus type 2 strain AG876. Virology 350:164-170.
-
(2006)
Virology
, vol.350
, pp. 164-170
-
-
Dolan, A.1
Addison, C.2
Gatherer, D.3
Davison, A.J.4
McGeoch, D.J.5
-
4
-
-
50949104366
-
Epstein-Barr virus BART microRNAs are produced from a large intron prior to splicing
-
Edwards, R. H., A. R. Marquitz, and N. Raab-Traub. 2008. Epstein-Barr virus BART microRNAs are produced from a large intron prior to splicing. J. Virol. 82:9094-9106.
-
(2008)
J. Virol.
, vol.82
, pp. 9094-9106
-
-
Edwards, R.H.1
Marquitz, A.R.2
Raab-Traub, N.3
-
5
-
-
0031060155
-
Induction of an exceptionally high-level, nontranslated, Epstein-Barr virus-encoded polyadenylated transcript in the Burkitt's lymphoma line Daudi
-
Gao, Y., P. R. Smith, L. Karran, Q. L. Lu, and B. E. Griffin. 1997. Induction of an exceptionally high-level, nontranslated, Epstein-Barr virus-encoded polyadenylated transcript in the Burkitt's lymphoma line Daudi. J. Virol. 71:84-94.
-
(1997)
J. Virol.
, vol.71
, pp. 84-94
-
-
Gao, Y.1
Smith, P.R.2
Karran, L.3
Lu, Q.L.4
Griffin, B.E.5
-
6
-
-
77949507153
-
RNA-Seq gene expression estimation with read mapping uncertainty
-
Li, B., V. Ruotti, R. M. Stewart, J. A. Thomson, and C. N. Dewey. 2010. RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics 26:493-500.
-
(2010)
Bioinformatics
, vol.26
, pp. 493-500
-
-
Li, B.1
Ruotti, V.2
Stewart, R.M.3
Thomson, J.A.4
Dewey, C.N.5
-
7
-
-
33645299815
-
Detection of Epstein-Barr virus infection and gene expression in human tumors by microarray analysis
-
Li, C., R. S. Chen, S. K. Hung, Y. T. Lee, C. Y. Yen, Y. W. Lai, R. H. Teng, J. Y. Huang, Y. C. Tang, C. P. Tung, T. T. Wei, B. Shieh, and S. T. Liu. 2006. Detection of Epstein-Barr virus infection and gene expression in human tumors by microarray analysis. J. Virol. Methods 133:158-166.
-
(2006)
J. Virol. Methods
, vol.133
, pp. 158-166
-
-
Li, C.1
Chen, R.S.2
Hung, S.K.3
Lee, Y.T.4
Yen, C.Y.5
Lai, Y.W.6
Teng, R.H.7
Huang, J.Y.8
Tang, Y.C.9
Tung, C.P.10
Wei, T.T.11
Shieh, B.12
Liu, S.T.13
-
8
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J. C., C. E. Mason, S. M. Mane, M. Stephens, and Y. Gilad. 2008. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 18:1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
9
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., B. A. Williams, K. McCue, L. Schaeffer, and B. Wold. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5:621-628. (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
10
-
-
73249130316
-
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
-
Reddy, T. E., F. Pauli, R. O. Sprouse, N. F. Neff, K. M. Newberry, M. J. Garabedian, and R. M. Myers. 2009. Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation. Genome Res. 19:2163-2171.
-
(2009)
Genome Res.
, vol.19
, pp. 2163-2171
-
-
Reddy, T.E.1
Pauli, F.2
Sprouse, R.O.3
Neff, N.F.4
Newberry, K.M.5
Garabedian, M.J.6
Myers, R.M.7
-
11
-
-
17344377537
-
Structure and coding content of CST (BART) family RNAs of Epstein-Barr virus
-
Smith, P. R., O. de Jesus, D. Turner, M. Hollyoake, C. E. Karstegl, B. E. Griffin, L. Karran, Y. Wang, S. D. Hayward, and P. J. Farrell. 2000. Structure and coding content of CST (BART) family RNAs of Epstein-Barr virus. J. Virol. 74:3082-3092.
-
(2000)
J. Virol.
, vol.74
, pp. 3082-3092
-
-
Smith, P.R.1
De Jesus, O.2
Turner, D.3
Hollyoake, M.4
Karstegl, C.E.5
Griffin, B.E.6
Karran, L.7
Wang, Y.8
Hayward, S.D.9
Farrell, P.J.10
-
12
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., L. Pachter, and S. L. Salzberg. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
13
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang, E. T., R. Sandberg, S. Luo, I. Khrebtukova, L. Zhang, C. Mayr, S. F. Kingsmore, G. P. Schroth, and C. B. Burge. 2008. Alternative isoform regulation in human tissue transcriptomes. Nature 456:470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
14
-
-
77955102632
-
Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq
-
Xu, G., C. Fewell, C. Taylor, N. Deng, D. Hedges, X. Wang, K. Zhang, M. Lacey, H. Zhang, Q. Yin, J. Cameron, Z. Lin, D. Zhu, and E. K. Flemington. 2010. Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq. RNA 16:1610-1622.
-
(2010)
RNA
, vol.16
, pp. 1610-1622
-
-
Xu, G.1
Fewell, C.2
Taylor, C.3
Deng, N.4
Hedges, D.5
Wang, X.6
Zhang, K.7
Lacey, M.8
Zhang, H.9
Yin, Q.10
Cameron, J.11
Lin, Z.12
Zhu, D.13
Flemington, E.K.14
-
15
-
-
34250888716
-
Complexities associated with expression of Epstein-Barr virus (EBV) lytic origins of DNA replication
-
Xue, S. A., and B. E. Griffin. 2007. Complexities associated with expression of Epstein-Barr virus (EBV) lytic origins of DNA replication. Nucleic Acids Res. 35:3391-3406.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3391-3406
-
-
Xue, S.A.1
Griffin, B.E.2
-
16
-
-
33144465752
-
Virus and cell RNAs expressed during Epstein-Barr virus replication
-
DOI 10.1128/JVI.80.5.2548-2565.2006
-
Yuan, J., E. Cahir-McFarland, B. Zhao, and E. Kieff. 2006. Virus and cell RNAs expressed during Epstein-Barr virus replication. J. Virol. 80:2548-2565. (Pubitemid 43271560)
-
(2006)
Journal of Virology
, vol.80
, Issue.5
, pp. 2548-2565
-
-
Yuan, J.1
Cahir-McFarland, E.2
Zhao, B.3
Kieff, E.4
-
17
-
-
33344472824
-
Transcriptional profiling of Epstein-Barr virus (EBV) genes and host cellular genes in nasal NK/T-cell lymphoma and chronic active EBV infection
-
DOI 10.1038/sj.bjc.6602968
-
Zhang, Y., J. H. Ohyashiki, T. Takaku, N. Shimizu, and K. Ohyashiki. 2006. Transcriptional profiling of Epstein-Barr virus (EBV) genes and host cellular genes in nasal NK/T-cell lymphoma and chronic active EBV infection. Br. J. Cancer 94:599-608. (Pubitemid 43289766)
-
(2006)
British Journal of Cancer
, vol.94
, Issue.4
, pp. 599-608
-
-
Zhang, Y.1
Ohyashiki, J.H.2
Takaku, T.3
Shimizu, N.4
Ohyashiki, K.5
-
18
-
-
43249105840
-
DNA microarray technology for simultaneous detection and species identification of seven human herpes viruses
-
Zheng, Z. B., Y. D. Wu, X. L. Yu, and S. Q. Shang. 2008. DNA microarray technology for simultaneous detection and species identification of seven human herpes viruses. J. Med. Virol. 80:1042-1050.
-
(2008)
J. Med. Virol.
, vol.80
, pp. 1042-1050
-
-
Zheng, Z.B.1
Wu, Y.D.2
Yu, X.L.3
Shang, S.Q.4
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