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Volumn 7, Issue , 2012, Pages 108-125

Unstable microsatellite repeats facilitate rapid evolution of coding and regulatory sequences

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; MICROSATELLITE DNA; RNA BINDING PROTEIN; DNA;

EID: 84865090514     PISSN: 16609263     EISSN: 16623797     Source Type: Book Series    
DOI: 10.1159/000337121     Document Type: Article
Times cited : (35)

References (50)
  • 1
    • 0034332317 scopus 로고    scopus 로고
    • Molecular melodies in high and low C
    • Hartl DL: Molecular melodies in high and low C. Nat Rev Genet 2000;1:145-149.
    • (2000) Nat Rev Genet , vol.1 , pp. 145-149
    • Hartl, D.L.1
  • 3
    • 78149432728 scopus 로고    scopus 로고
    • Variable tandem repeats accelerate evolution of coding and regulatory sequences
    • Gemayel R, Vinces MD, Legendre M, Verstrepen KJ: Variable tandem repeats accelerate evolution of coding and regulatory sequences. Ann Rev Genet 2010;44:445-477.
    • (2010) Ann Rev Genet , vol.44 , pp. 445-477
    • Gemayel, R.1    Vinces, M.D.2    Legendre, M.3    Verstrepen, K.J.4
  • 4
    • 38849170546 scopus 로고    scopus 로고
    • Sequence-based estimation of minisatellite and microsatellite repeat variability
    • Legendre M, Pochet N, Pak T, Verstrepen KJ: Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res 2007; 17:1787-1796.
    • (2007) Genome Res , vol.17 , pp. 1787-1796
    • Legendre, M.1    Pochet, N.2    Pak, T.3    Verstrepen, K.J.4
  • 5
    • 0018857680 scopus 로고
    • Selfish DNA: The ultimate parasite
    • Orgel LE, Crick FH: Selfish DNA: the ultimate parasite. Nature 1980;284:604-607.
    • (1980) Nature , vol.284 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.2
  • 6
    • 25144494777 scopus 로고    scopus 로고
    • Intragenic tandem repeats generate functional variability
    • Verstrepen KJ, Jansen A, Lewitter F, Fink GR: Intragenic tandem repeats generate functional variability. Nat Genet 2005;37:986-990.
    • (2005) Nat Genet , vol.37 , pp. 986-990
    • Verstrepen, K.J.1    Jansen, A.2    Lewitter, F.3    Fink, G.R.4
  • 7
    • 0034049112 scopus 로고    scopus 로고
    • Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae
    • Young ET, Sloan JS, Van Riper K: Trinucleotide repeats are clustered in regulatory genes in Saccharomyces cerevisiae. Genetics 2000;154:1053-1068.
    • (2000) Genetics , vol.154 , pp. 1053-1068
    • Young, E.T.1    Sloan, J.S.2    Van Riper, K.3
  • 8
    • 0025800526 scopus 로고
    • Androgen receptor gene-mutations in X-linked spinal and bulbar muscular atrophy
    • Laspada AR, Wilson EM, Lubahn DB, Harding AE, Fischbeck KH: Androgen receptor gene-mutations in X-linked spinal and bulbar muscular atrophy. Nature 1991;352:77-79.
    • (1991) Nature , vol.352 , pp. 77-79
    • Laspada, A.R.1    Wilson, E.M.2    Lubahn, D.B.3    Harding, A.E.4    Fischbeck, K.H.5
  • 9
    • 0025905795 scopus 로고
    • Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile-X syndrome
    • Verkerk A, Pieretti M, Sutcliffe JS, Fu YH, Kuhl DPA, et al: Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile-X syndrome. Cell 1991;65:905-914.
    • (1991) Cell , vol.65 , pp. 905-914
    • Verkerk, A.1    Pieretti, M.2    Sutcliffe, J.S.3    Fu, Y.H.4    Kuhl, D.P.A.5
  • 10
    • 0027480960 scopus 로고
    • A novel gene containing a trinucle-otide repeat that is expanded and unstable on Huntingtons-disease chromosomes
    • Macdonald ME, Ambrose CM, Duyao MP, Myers RH, Lin C, et al: A novel gene containing a trinucle-otide repeat that is expanded and unstable on Huntingtons-disease chromosomes. Cell 1993;72:971-983.
    • (1993) Cell , vol.72 , pp. 971-983
    • MacDonald, M.E.1    Ambrose, C.M.2    Duyao, M.P.3    Myers, R.H.4    Lin, C.5
  • 11
    • 34547692622 scopus 로고    scopus 로고
    • Trinucleotide repeat disorders
    • Orr H, Zoghbi H: Trinucleotide repeat disorders. Ann Rev Neurosci 2007;30:575-621.
    • (2007) Ann Rev Neurosci , vol.30 , pp. 575-621
    • Orr, H.1    Zoghbi, H.2
  • 12
    • 0029997090 scopus 로고    scopus 로고
    • Phenotypic characterization of individuals with 30-40 CAG repeats in the Huntington disease (HD) gene reveals HD cases with 36 repeats and apparently normal elderly individuals with 36-39 repeats
    • Rubinsztein DC, Leggo J, Coles R, Almqvist E, Biancalana V, et al: Phenotypic characterization of individuals with 30-40 CAG repeats in the Huntington disease (HD) gene reveals HD cases with 36 repeats and apparently normal elderly individuals with 36-39 repeats. Am J Hum Genet 1996;59:16-22.
    • (1996) Am J Hum Genet , vol.59 , pp. 16-22
    • Rubinsztein, D.C.1    Leggo, J.2    Coles, R.3    Almqvist, E.4    Biancalana, V.5
  • 13
    • 0035937523 scopus 로고    scopus 로고
    • Interference by huntingtin and atrophin-1 with CBP-mediated transcription leading to cellular toxicity
    • Nucifora FC Jr, Sasaki M, Peters MF, Huang H, Cooper JK, et al: Interference by huntingtin and atrophin-1 with CBP-mediated transcription leading to cellular toxicity. Science 2001;291:2423-2428.
    • (2001) Science , vol.291 , pp. 2423-2428
    • Nucifora, Jr.F.C.1    Sasaki, M.2    Peters, M.F.3    Huang, H.4    Cooper, J.K.5
  • 14
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe KH, Shields DC: Molecular evidence for an ancient duplication of the entire yeast genome. Nature 1997;387:708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 15
    • 0022974221 scopus 로고
    • Opacity genes in Neisseria-gonorrhoeae-control of phase and antigenic variation
    • Stern A, Brown M, Nickel P, Meyer TF: Opacity genes in Neisseria-gonorrhoeae-control of phase and antigenic variation. Cell 1986;47:61-71.
    • (1986) Cell , vol.47 , pp. 61-71
    • Stern, A.1    Brown, M.2    Nickel, P.3    Meyer, T.F.4
  • 16
    • 0024465134 scopus 로고
    • The molecular mechanism of phase variation of H. influenzae lipopolysaccharide
    • Weiser JN, Love JM, Moxon ER: The molecular mechanism of phase variation of H. influenzae lipopolysaccharide. Cell 1989;59:657-665.
    • (1989) Cell , vol.59 , pp. 657-665
    • Weiser, J.N.1    Love, J.M.2    Moxon, E.R.3
  • 17
    • 0033972220 scopus 로고    scopus 로고
    • The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases
    • De Bolle X, Bayliss CD, Field D, van de Ven T, Saunders NJ, et al: The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases. Mol Microbiol 2000;35:211-222.
    • (2000) Mol Microbiol , vol.35 , pp. 211-222
    • De Bolle, X.1    Bayliss, C.D.2    Field, D.3    Van De Ven, T.4    Saunders, N.J.5
  • 18
    • 66349122956 scopus 로고    scopus 로고
    • Phasevarions Mediate random switching of gene expression in pathogenic Ne i s s e r i a
    • Srikhanta YN, Dowideit SJ, Edwards JL, Falsetta ML, Wu HJ, et al: Phasevarions mediate random switching of gene expression in pathogenic Ne i s s e r i a. PLoS Pathog 2009;5:e1000400.
    • (2009) PLoS Pathog , vol.5
    • Srikhanta, Y.N.1    Dowideit, S.J.2    Edwards, J.L.3    Falsetta, M.L.4    Wu, H.J.5
  • 19
    • 34347209094 scopus 로고    scopus 로고
    • Simple sequence repeats in prokaryotic genomes
    • Mrazek J, Guo XX, Shah A: Simple sequence repeats in prokaryotic genomes. Proc Natl Acad Sci USA 2007;104:8472-8477.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 8472-8477
    • Mrazek, J.1    Guo, X.X.2    Shah, A.3
  • 20
    • 0037008528 scopus 로고    scopus 로고
    • White collar-1, a circadian blue light photoreceptor, binding to the frequency promoter
    • Froehlich AC, Liu Y, Loros JJ, Dunlap JC: White collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 2002;297:815-819.
    • (2002) Science , vol.297 , pp. 815-819
    • Froehlich, A.C.1    Liu, Y.2    Loros, J.J.3    Dunlap, J.C.4
  • 21
    • 39849099440 scopus 로고    scopus 로고
    • Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circa-dian clock
    • Michael T P, Park S, Kim TS, Booth J, Byer A, et al: Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circa-dian clock. PLoS One 2007;2:e795.
    • (2007) PLoS One , vol.2
    • Michael, T.P.1    Park, S.2    Kim, T.S.3    Booth, J.4    Byer, A.5
  • 22
    • 0031442734 scopus 로고    scopus 로고
    • Natural variation in a Drosophila clock gene and temperature compensation
    • Sawyer LA, Hennessy JM, Peixoto AA, Rosato E, Parkinson H, et al: Natural variation in a Drosophila clock gene and temperature compensation. Science 1997;278:2117-2120.
    • (1997) Science , vol.278 , pp. 2117-2120
    • Sawyer, L.A.1    Hennessy, J.M.2    Peixoto, A.A.3    Rosato, E.4    Parkinson, H.5
  • 23
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: The evolution of gene regulation and morphological diversity
    • Carroll SB: Endless forms: the evolution of gene regulation and morphological diversity. Cell 2000;101:577-580.
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 24
    • 11144230088 scopus 로고    scopus 로고
    • Molecular origins of rapid and continuous morphological evolution
    • Fondon JW, Garner HR: Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci USA 2004;101:18058-18063.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 18058-18063
    • Fondon, J.W.1    Garner, H.R.2
  • 25
    • 35748963803 scopus 로고    scopus 로고
    • The correlated evolution of Runx2 tandem repeats, tran-scriptional activity, and facial length in Carnivora
    • Sears KE, Goswami A, Flynn JJ, Niswander LA: The correlated evolution of Runx2 tandem repeats, tran-scriptional activity, and facial length in Carnivora. Evol Dev 2007;9:555-565.
    • (2007) Evol Dev , vol.9 , pp. 555-565
    • Sears, K.E.1    Goswami, A.2    Flynn, J.J.3    Niswander, L.A.4
  • 26
    • 23444458415 scopus 로고
    • Transcriptional activation modulated by homopolymeric glutamine and proline stretches
    • Gerber H P, Seipel K, Georgiev O, Hofferer M, Hug M, et al: Transcriptional activation modulated by homopolymeric glutamine and proline stretches. Science 1994;263:808-811.
    • (1994) Science , vol.263 , pp. 808-811
    • Gerber, H.P.1    Seipel, K.2    Georgiev, O.3    Hofferer, M.4    Hug, M.5
  • 27
    • 67650868984 scopus 로고    scopus 로고
    • Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins
    • Simon M, Hancock JM: Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins. Genome Biol 2009;10:R59.
    • (2009) Genome Biol , vol.10
    • Simon, M.1    Hancock, J.M.2
  • 28
    • 18044379515 scopus 로고    scopus 로고
    • Microarray identification of FMRP-associated brain mRNAs and altered mRNA trans-lational profiles in fragile X syndrome
    • Brown V, Jin P, Ceman S, Darnell JC, O'Donnell WT, et al: Microarray identification of FMRP-associated brain mRNAs and altered mRNA trans-lational profiles in fragile X syndrome. Cell 2001; 107:477-487.
    • (2001) Cell , vol.107 , pp. 477-487
    • Brown, V.1    Jin, P.2    Ceman, S.3    Darnell, J.C.4    O'Donnell, W.T.5
  • 29
    • 23944431645 scopus 로고    scopus 로고
    • FMR1 RNA within the intranuclear inclusions of fragile X-associated tremor/ataxia syndrome (FXTAS)
    • Tassone F, Iwahashi C, Hagerman PJ: FMR1 RNA within the intranuclear inclusions of fragile X-associated tremor/ataxia syndrome (FXTAS). RNA Biol 2004;1:103-105.
    • (2004) RNA Biol , vol.1 , pp. 103-105
    • Tassone, F.1    Iwahashi, C.2    Hagerman, P.J.3
  • 30
    • 14844345314 scopus 로고    scopus 로고
    • Microsatellite instability regulates transcription factor binding and gene expression
    • Martin P, Makepeace K, Hill SA, Hood DW, Moxon ER: Microsatellite instability regulates transcription factor binding and gene expression. Proc Natl Acad Sci USA 2005;102:3800-3804.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 3800-3804
    • Martin, P.1    Makepeace, K.2    Hill, S.A.3    Hood, D.W.4    Moxon, E.R.5
  • 31
    • 0023811687 scopus 로고
    • Modulation of epidermal growth factor receptor proto-oncogene transcription by a promoter site sensitive to S1 nuclease
    • Johnson AC, Jinno Y, Merlino GT: Modulation of epidermal growth factor receptor proto-oncogene transcription by a promoter site sensitive to S1 nuclease. Mol Cell Biol 1988;8:4174-4184.
    • (1988) Mol Cell Biol , vol.8 , pp. 4174-4184
    • Johnson, A.C.1    Jinno, Y.2    Merlino, G.T.3
  • 32
    • 0036510121 scopus 로고    scopus 로고
    • A polymorphic microsatellite that mediates induction of PIG3 by p53
    • Contente A, Dittmer A, Koch MC, Roth J, Dobbelstein M: A polymorphic microsatellite that mediates induction of PIG3 by p53. Nat Genet 2002;30:315-320.
    • (2002) Nat Genet , vol.30 , pp. 315-320
    • Contente, A.1    Dittmer, A.2    Koch, M.C.3    Roth, J.4    Dobbelstein, M.5
  • 34
    • 0035880416 scopus 로고    scopus 로고
    • Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite
    • Albanese V, Biguet NF, Kiefer H, Bayard E, Mallet J, Meloni R: Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite. Hum Mol Genet 2001;10:1785-1792.
    • (2001) Hum Mol Genet , vol.10 , pp. 1785-1792
    • Albanese, V.1    Biguet, N.F.2    Kiefer, H.3    Bayard, E.4    Mallet, J.5    Meloni, R.6
  • 35
    • 0025987532 scopus 로고
    • Molecular basis of Mycoplasma surface antigenic variation: A novel set of divergent genes undergo spontaneous mutation of periodic coding regions and 5' regulatory sequences
    • Yogev D, Rosengarten R, Watson-McKown R, Wise KS: Molecular basis of Mycoplasma surface antigenic variation: a novel set of divergent genes undergo spontaneous mutation of periodic coding regions and 5' regulatory sequences. EMBO J 1991; 10:4069-4079.
    • (1991) EMBO J , vol.10 , pp. 4069-4079
    • Yogev, D.1    Rosengarten, R.2    Watson-Mckown, R.3    Wise, K.S.4
  • 36
    • 0027256770 scopus 로고
    • Phase variation of H. influenzae fimbriae: Transcriptional control of two divergent genes through a variable combined promoter region
    • van Ham SM, van Alphen L, Mooi FR, van Putten JP: Phase variation of H. influenzae fimbriae: transcriptional control of two divergent genes through a variable combined promoter region. Cell 1993;73:1187-1196.
    • (1993) Cell , vol.73 , pp. 1187-1196
    • Van Ham, S.M.1    Van Alphen, L.2    Mooi, F.R.3    Van Putten, J.P.4
  • 37
    • 0029026719 scopus 로고
    • Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • Iyer V, Struhl K: Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J 1995;14:2570-2579.
    • (1995) EMBO J , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 38
    • 66349113764 scopus 로고    scopus 로고
    • Unstable tandem repeats in promoters confer transcriptional evolvability
    • Vinces MD, Legendre M, Caldara M, Hagihara M, Verstrepen KJ: Unstable tandem repeats in promoters confer transcriptional evolvability. Science 2009;324:1213-1216.
    • (2009) Science , vol.324 , pp. 1213-1216
    • Vinces, M.D.1    Legendre, M.2    Caldara, M.3    Hagihara, M.4    Verstrepen, K.J.5
  • 39
    • 0042318736 scopus 로고    scopus 로고
    • Effects of triplet repeat sequences on nucleosome positioning and gene expression in yeast minichromosomes
    • Tomita N, Fujita R, Kurihara D, Shindo H, Wells RD, Shimizu M: Effects of triplet repeat sequences on nucleosome positioning and gene expression in yeast minichromosomes. Nucleic Acids Res Suppl 2002;231-232.
    • (2002) Nucleic Acids Res Suppl , pp. 231-232
    • Tomita, N.1    Fujita, R.2    Kurihara, D.3    Shindo, H.4    Wells, R.D.5    Shimizu, M.6
  • 40
    • 0033983537 scopus 로고    scopus 로고
    • Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR
    • Tian B, White RJ, Xia T, Welle S, Turner DH, et al: Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR. RNA 2000;6:79-87.
    • (2000) RNA , vol.6 , pp. 79-87
    • Tian, B.1    White, R.J.2    Xia, T.3    Welle, S.4    Turner, D.H.5
  • 42
    • 1542723471 scopus 로고    scopus 로고
    • A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing
    • Hefferon T W, Groman JD, Yurk CE, Cutting GR: A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing. Proc Natl Acad Sci USA 2004;101:3504-3509.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 3504-3509
    • Hefferon, T.W.1    Groman, J.D.2    Yurk, C.E.3    Cutting, G.R.4
  • 44
    • 0037168537 scopus 로고    scopus 로고
    • Z-DNA-binding proteins can act as potent effectors of gene expression in vivo
    • Oh DB, Kim YG, Rich A: Z-DNA-binding proteins can act as potent effectors of gene expression in vivo. Proc Natl Acad Sci USA 2002;99:16666-16671.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 16666-16671
    • Oh, D.B.1    Kim, Y.G.2    Rich, A.3
  • 45
    • 0025276590 scopus 로고
    • D(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription
    • Naylor LH, Clark EM: d(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription. Nucleic Acids Res 1990; 18:1595-1601.
    • (1990) Nucleic Acids Res , vol.18 , pp. 1595-1601
    • Naylor, L.H.1    Clark, E.M.2
  • 47
    • 0036855185 scopus 로고    scopus 로고
    • Abundant raw material for cis-regulatory evolution in humans
    • Rockman MV, Wray GA: Abundant raw material for cis-regulatory evolution in humans. Mol Biol Evol 2002;19:1991-2004.
    • (2002) Mol Biol Evol , vol.19 , pp. 1991-2004
    • Rockman, M.V.1    Wray, G.A.2
  • 48
    • 74549187509 scopus 로고    scopus 로고
    • Promoter architecture and the evolvability of gene expression
    • Tirosh I, Barkai N, Verstrepen KJ: Promoter architecture and the evolvability of gene expression. J Biol 2009;8:95.
    • (2009) J Biol , vol.8 , pp. 95
    • Tirosh, I.1    Barkai, N.2    Verstrepen, K.J.3
  • 49
    • 0022533981 scopus 로고
    • Cryptic simplicity in DNA is a major source of genetic variation
    • Tautz D, Trick M, Dover GA: Cryptic simplicity in DNA is a major source of genetic variation. Nature 1986;322:652-656.
    • (1986) Nature , vol.322 , pp. 652-656
    • Tautz, D.1    Trick, M.2    Dover, G.A.3


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