메뉴 건너뛰기




Volumn 7, Issue 8, 2012, Pages

Resolution and characterization of distinct cpn60-based subgroups of gardnerella vaginalis in the vaginal microbiota

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM DETECTION; BIOFILM; CONTROLLED STUDY; CPN60 GENE; GARDNERELLA VAGINALIS; GENE SEQUENCE; GENOTYPE; IN VITRO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; SIALIDASE GENE; VAGINA FLORA; VAGINITIS;

EID: 84865019655     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043009     Document Type: Article
Times cited : (74)

References (67)
  • 1
    • 0001757354 scopus 로고
    • Heretofore undescribed organism isolated from the genitourinary system
    • Leopold S, ((1953)) Heretofore undescribed organism isolated from the genitourinary system. U S Armed Forces Med J 4:: 263--266.
    • (1953) U S Armed Forces Med J , vol.4 , pp. 263-266
    • Leopold, S.1
  • 2
    • 0000575270 scopus 로고
    • Haemophilus vaginalis vaginitis: a newly defined specific infection previously classified non-specific vaginitis
    • Gardner HL, Dukes CD, ((1955)) Haemophilus vaginalis vaginitis: a newly defined specific infection previously classified non-specific vaginitis. Am J Obstet Gynecol 69:: 962--976.
    • (1955) Am J Obstet Gynecol , vol.69 , pp. 962-976
    • Gardner, H.L.1    Dukes, C.D.2
  • 3
    • 0000585620 scopus 로고
    • The taxonomic position of "Haemophilus vaginalis" [Corynebacterium vaginale]
    • Zinnemann K, Turner GC, ((1963)) The taxonomic position of "Haemophilus vaginalis" [Corynebacterium vaginale]. The Journal of Pathology and Bacteriology 85:: 213--219.
    • (1963) The Journal of Pathology and Bacteriology , vol.85 , pp. 213-219
    • Zinnemann, K.1    Turner, G.C.2
  • 4
    • 0018872951 scopus 로고
    • Transfer of Haemophilus vaginalis Gardner and Dukes to a new genus, Gardnerella: G. vaginalis (Gardner and Dukes) comb. nov
    • Greenwood JR, Pickett MJ, ((1980)) Transfer of Haemophilus vaginalis Gardner and Dukes to a new genus, Gardnerella: G. vaginalis (Gardner and Dukes) comb. nov. Int J Syst Evol Microbiol 30:: 170--178.
    • (1980) Int J Syst Evol Microbiol , vol.30 , pp. 170-178
    • Greenwood, J.R.1    Pickett, M.J.2
  • 5
    • 0026035994 scopus 로고
    • Microbiological, epidemiological and clinical correlates of vaginal colonisation by Mobiluncus species
    • Hillier SL, Critchlow CW, Stevens CE, Roberts MC, Wolner-Hanssen P, et al. ((1991)) Microbiological, epidemiological and clinical correlates of vaginal colonisation by Mobiluncus species. Genitourin Med 67:: 26--31.
    • (1991) Genitourin Med , vol.67 , pp. 26-31
    • Hillier, S.L.1    Critchlow, C.W.2    Stevens, C.E.3    Roberts, M.C.4    Wolner-Hanssen, P.5
  • 7
    • 23944469710 scopus 로고    scopus 로고
    • Bacterial vaginosis, vaginal flora patterns and vaginal hygiene practices in patients presenting with vaginal discharge syndrome in The Gambia, West Africa
    • Demba E, Morison L, van der Loeff MS, Awasana AA, Gooding E, et al. ((2005)) Bacterial vaginosis, vaginal flora patterns and vaginal hygiene practices in patients presenting with vaginal discharge syndrome in The Gambia, West Africa. BMC Infect Dis 5:: 12.
    • (2005) BMC Infect Dis , vol.5 , pp. 12
    • Demba, E.1    Morison, L.2    van der Loeff, M.S.3    Awasana, A.A.4    Gooding, E.5
  • 8
    • 74049128981 scopus 로고    scopus 로고
    • High vaginal concentrations of Atopobium vaginae and Gardnerella vaginalis in women undergoing preterm labor
    • Menard JP, Mazouni C, Salem-Cherif I, Fenollar F, Raoult D, et al. ((2010)) High vaginal concentrations of Atopobium vaginae and Gardnerella vaginalis in women undergoing preterm labor. Obstet Gynecol 115:: 134--140.
    • (2010) Obstet Gynecol , vol.115 , pp. 134-140
    • Menard, J.P.1    Mazouni, C.2    Salem-Cherif, I.3    Fenollar, F.4    Raoult, D.5
  • 9
    • 0033026894 scopus 로고    scopus 로고
    • Intravaginal bacterial flora in patients with uterine cervical cancer. High incidence of detection of Gardnerella vaginalis
    • Mikamo H, Sato Y, Hayasaki Y, Kawazoe K, Izumi K, et al. ((1999)) Intravaginal bacterial flora in patients with uterine cervical cancer. High incidence of detection of Gardnerella vaginalis. J Infect Chemother 5:: 82--85.
    • (1999) J Infect Chemother , vol.5 , pp. 82-85
    • Mikamo, H.1    Sato, Y.2    Hayasaki, Y.3    Kawazoe, K.4    Izumi, K.5
  • 10
    • 0023278823 scopus 로고
    • Extra-vaginal infection caused by Gardnerella vaginalis
    • Johnson AP, Boustouller YL, ((1987)) Extra-vaginal infection caused by Gardnerella vaginalis. Epidemiol Infect 98:: 131--137.
    • (1987) Epidemiol Infect , vol.98 , pp. 131-137
    • Johnson, A.P.1    Boustouller, Y.L.2
  • 11
    • 70349312511 scopus 로고    scopus 로고
    • Vertebral osteomyelitis and discitis due to Gardnerella vaginalis
    • Graham S, Howes C, Dunsmuir R, Sandoe J, ((2009)) Vertebral osteomyelitis and discitis due to Gardnerella vaginalis. J Med Microbiol 58:: 1382--1384.
    • (2009) J Med Microbiol , vol.58 , pp. 1382-1384
    • Graham, S.1    Howes, C.2    Dunsmuir, R.3    Sandoe, J.4
  • 12
    • 24344504553 scopus 로고    scopus 로고
    • Characterization of vaginal microflora of healthy, nonpregnant women by chaperonin-60 sequence-based methods
    • Hill JE, Goh SH, Money DM, Doyle M, Li A, et al. ((2005)) Characterization of vaginal microflora of healthy, nonpregnant women by chaperonin-60 sequence-based methods. Am J Obstet Gynecol 193:: 682--692.
    • (2005) Am J Obstet Gynecol , vol.193 , pp. 682-692
    • Hill, J.E.1    Goh, S.H.2    Money, D.M.3    Doyle, M.4    Li, A.5
  • 13
    • 34748872761 scopus 로고    scopus 로고
    • Biotypes and antibiotic resistance patterns of Gardnerella vaginalis strains isolated from healthy women and women with bacterial vaginosis
    • Tosun I, Alpay Karaoglu S, Ciftci H, Buruk CK, Aydin F, et al. ((2007)) Biotypes and antibiotic resistance patterns of Gardnerella vaginalis strains isolated from healthy women and women with bacterial vaginosis. Mikrobiyol Bul 41:: 21--27.
    • (2007) Mikrobiyol Bul , vol.41 , pp. 21-27
    • Tosun, I.1    Alpay Karaoglu, S.2    Ciftci, H.3    Buruk, C.K.4    Aydin, F.5
  • 16
    • 79955598471 scopus 로고    scopus 로고
    • Gardnerella vaginalis comprises three distinct genotypes of which only two produce sialidase
    • Santiago GL, Deschaght P, El Aila N, Kiama TN, Verstraelen H, et al. (2011) Gardnerella vaginalis comprises three distinct genotypes of which only two produce sialidase. Am J Obstet Gynecol 204: 450 e451-457.
    • (2011) Am J Obstet Gynecol , vol.204 , Issue.450 , pp. 451-457
    • Santiago, G.L.1    Deschaght, P.2    El Aila, N.3    Kiama, T.N.4    Verstraelen, H.5
  • 18
    • 0030838102 scopus 로고    scopus 로고
    • Genotypic differentiation of Gardnerella vaginalis by amplified ribosomal DNA restriction analysis (ARDRA)
    • Ingianni A, Petruzzelli S, Morandotti G, Pompei R, ((1997)) Genotypic differentiation of Gardnerella vaginalis by amplified ribosomal DNA restriction analysis (ARDRA). FEMS Immunol Med Microbiol 18:: 61--66.
    • (1997) FEMS Immunol Med Microbiol , vol.18 , pp. 61-66
    • Ingianni, A.1    Petruzzelli, S.2    Morandotti, G.3    Pompei, R.4
  • 20
    • 74149088531 scopus 로고    scopus 로고
    • Resolution of phenotypically distinct strains of Enterococcus spp. in a complex microbial community using cpn60 universal target sequencing
    • Vermette CJ, Russell AH, Desai AR, Hill JE, ((2010)) Resolution of phenotypically distinct strains of Enterococcus spp. in a complex microbial community using cpn60 universal target sequencing. Microbial Ecol 59:: 14--24.
    • (2010) Microbial Ecol , vol.59 , pp. 14-24
    • Vermette, C.J.1    Russell, A.H.2    Desai, A.R.3    Hill, J.E.4
  • 21
    • 79954603471 scopus 로고    scopus 로고
    • Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): application to Thermoanaerobacter species
    • Verbeke TJ, Sparling R, Hill JE, Links MG, Levin D, et al. ((2011)) Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): application to Thermoanaerobacter species. Syst Appl Microbiol 34:: 171--179.
    • (2011) Syst Appl Microbiol , vol.34 , pp. 171-179
    • Verbeke, T.J.1    Sparling, R.2    Hill, J.E.3    Links, M.G.4    Levin, D.5
  • 22
    • 84856747520 scopus 로고    scopus 로고
    • A molecular enrichment strategy based on cpn60 for detection of Epsilon-Proteobacteria in the dog fecal microbiome
    • Chaban B, Links MG, Hill JE, ((2012)) A molecular enrichment strategy based on cpn60 for detection of Epsilon-Proteobacteria in the dog fecal microbiome. Microbial Ecol 63:: 348--357.
    • (2012) Microbial Ecol , vol.63 , pp. 348-357
    • Chaban, B.1    Links, M.G.2    Hill, J.E.3
  • 23
    • 84862023198 scopus 로고    scopus 로고
    • Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss)
    • Desai AR, Links MG, Collins SA, Mansfield GS, Drew M, et al. ((2012)) Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss). Aquaculture 350-353:: 134--142.
    • (2012) Aquaculture , vol.350-353 , pp. 134-142
    • Desai, A.R.1    Links, M.G.2    Collins, S.A.3    Mansfield, G.S.4    Drew, M.5
  • 24
    • 67349174279 scopus 로고    scopus 로고
    • Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure
    • Desai AR, Musil KM, Carr AP, Hill JE, ((2009)) Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure. Vet Microbiol 137:: 120--128.
    • (2009) Vet Microbiol , vol.137 , pp. 120-128
    • Desai, A.R.1    Musil, K.M.2    Carr, A.P.3    Hill, J.E.4
  • 25
    • 33646112924 scopus 로고    scopus 로고
    • Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken
    • Dumonceaux TJ, Hill JE, Hemmingsen SM, Van Kessel AG, ((2006)) Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken. Appl Environ Microbiol 72:: 2815--2823.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2815-2823
    • Dumonceaux, T.J.1    Hill, J.E.2    Hemmingsen, S.M.3    Van Kessel, A.G.4
  • 26
    • 33746606040 scopus 로고    scopus 로고
    • Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament
    • Dumonceaux TJ, Hill JE, Pelletier C, Paice MG, Van Kessel AG, et al. ((2006)) Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament. Can J Microbiol 52:: 494--500.
    • (2006) Can J Microbiol , vol.52 , pp. 494-500
    • Dumonceaux, T.J.1    Hill, J.E.2    Pelletier, C.3    Paice, M.G.4    Van Kessel, A.G.5
  • 27
    • 84864981750 scopus 로고    scopus 로고
    • Diets supplemented with chickpea or its main oligosaccharide component raffinose modify fecal microbial composition in healthy adults
    • Fernando WMU, Hill JE, Zello GA, Tyler RT, Dahl WJ, et al. ((2010)) Diets supplemented with chickpea or its main oligosaccharide component raffinose modify fecal microbial composition in healthy adults. Beneficial Microbes 1:: 197--207.
    • (2010) Beneficial Microbes , vol.1 , pp. 197-207
    • Fernando, W.M.U.1    Hill, J.E.2    Zello, G.A.3    Tyler, R.T.4    Dahl, W.J.5
  • 28
    • 13544258663 scopus 로고    scopus 로고
    • Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR
    • Hill JE, Hemmingsen SM, Goldade BG, Dumonceaux TJ, Klassen J, et al. ((2005)) Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR. Appl Environ Microbiol 71:: 867--875.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 867-875
    • Hill, J.E.1    Hemmingsen, S.M.2    Goldade, B.G.3    Dumonceaux, T.J.4    Klassen, J.5
  • 29
    • 0036271968 scopus 로고    scopus 로고
    • Extensive profiling of a complex microbial community by high-throughput sequencing
    • Hill JE, Seipp RP, Betts M, Hawkins L, Van Kessel AG, et al. ((2002)) Extensive profiling of a complex microbial community by high-throughput sequencing. Appl Environ Microbiol 68:: 3055--3066.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3055-3066
    • Hill, J.E.1    Seipp, R.P.2    Betts, M.3    Hawkins, L.4    Van Kessel, A.G.5
  • 30
    • 65549089957 scopus 로고    scopus 로고
    • Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition
    • Schellenberg J, Links MG, Hill JE, Dumonceaux TJ, Peters GA, et al. ((2009)) Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition. Appl Environ Microbiol 75:: 2889--2898.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2889-2898
    • Schellenberg, J.1    Links, M.G.2    Hill, J.E.3    Dumonceaux, T.J.4    Peters, G.A.5
  • 31
    • 79960068468 scopus 로고    scopus 로고
    • Pyrosequencing of chaperonin-60 (cpn60) amplicons as a means of determining microbial community composition
    • Schellenberg J, Links MG, Hill JE, Hemmingsen SM, Peters GA, et al. ((2011)) Pyrosequencing of chaperonin-60 (cpn60) amplicons as a means of determining microbial community composition. Methods Mol Biol 733:: 143--158.
    • (2011) Methods Mol Biol , vol.733 , pp. 143-158
    • Schellenberg, J.1    Links, M.G.2    Hill, J.E.3    Hemmingsen, S.M.4    Peters, G.A.5
  • 32
    • 9044222878 scopus 로고    scopus 로고
    • HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci
    • Goh SH, Potter S, Wood JO, Hemmingsen SM, Reynolds RP, et al. ((1996)) HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. J Clin Microbiol 34:: 818--823.
    • (1996) J Clin Microbiol , vol.34 , pp. 818-823
    • Goh, S.H.1    Potter, S.2    Wood, J.O.3    Hemmingsen, S.M.4    Reynolds, R.P.5
  • 33
    • 33644840902 scopus 로고    scopus 로고
    • Improved template representation in cpn60 PCR product libraries generated from complex templates by application of a specific mixture of PCR primers
    • Hill JE, Town JR, Hemmingsen SM, ((2006)) Improved template representation in cpn60 PCR product libraries generated from complex templates by application of a specific mixture of PCR primers. Environ Microbiol 8:: 741--746.
    • (2006) Environ Microbiol , vol.8 , pp. 741-746
    • Hill, J.E.1    Town, J.R.2    Hemmingsen, S.M.3
  • 34
    • 0035489975 scopus 로고    scopus 로고
    • Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequences
    • Brousseau R, Hill JE, Prefontaine G, Goh SH, Harel J, et al. ((2001)) Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequences. Appl Environ Microbiol 67:: 4828--4833.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4828-4833
    • Brousseau, R.1    Hill, J.E.2    Prefontaine, G.3    Goh, S.H.4    Harel, J.5
  • 35
    • 0034459932 scopus 로고    scopus 로고
    • Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences
    • Goh SH, Facklam RR, Chang M, Hill JE, Tyrrell GJ, et al. ((2000)) Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences. J Clin Microbiol 38:: 3953--3959.
    • (2000) J Clin Microbiol , vol.38 , pp. 3953-3959
    • Goh, S.H.1    Facklam, R.R.2    Chang, M.3    Hill, J.E.4    Tyrrell, G.J.5
  • 36
    • 33645463746 scopus 로고    scopus 로고
    • Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCR-amplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence database
    • Hill JE, Paccagnella A, Law K, Melito PL, Woodward DL, et al. ((2006)) Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCR-amplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence database. J Med Microbiol 55:: 393--399.
    • (2006) J Med Microbiol , vol.55 , pp. 393-399
    • Hill, J.E.1    Paccagnella, A.2    Law, K.3    Melito, P.L.4    Woodward, D.L.5
  • 37
    • 77957810997 scopus 로고    scopus 로고
    • Use of groESL as a target for identification of Abiotrophia, Granulicatella, and Gemella species
    • Hung WC, Tseng SP, Chen HJ, Tsai JC, Chang CH, et al. ((2010)) Use of groESL as a target for identification of Abiotrophia, Granulicatella, and Gemella species. J Clin Microbiol 48:: 3532--3538.
    • (2010) J Clin Microbiol , vol.48 , pp. 3532-3538
    • Hung, W.C.1    Tseng, S.P.2    Chen, H.J.3    Tsai, J.C.4    Chang, C.H.5
  • 38
    • 78049495073 scopus 로고    scopus 로고
    • Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods
    • Sakamoto M, Ohkuma M, ((2010)) Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods. J Med Microbiol 59:: 1293--1302.
    • (2010) J Med Microbiol , vol.59 , pp. 1293-1302
    • Sakamoto, M.1    Ohkuma, M.2
  • 39
    • 78149334379 scopus 로고    scopus 로고
    • hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes
    • Sakamoto M, Suzuki N, Benno Y, ((2010)) hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes. Int J Syst Evol Microbiol 60:: 2984--2990.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2984-2990
    • Sakamoto, M.1    Suzuki, N.2    Benno, Y.3
  • 40
    • 70349316719 scopus 로고    scopus 로고
    • Phylogenetic analysis and identification of Aeromonas species based on sequencing of the cpn60 universal target
    • Minana-Galbis D, Urbizu-Serrano A, Farfan M, Fuste MC, Loren JG, ((2009)) Phylogenetic analysis and identification of Aeromonas species based on sequencing of the cpn60 universal target. Int J Syst Evol Microbiol 59:: 1976--1983.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1976-1983
    • Minana-Galbis, D.1    Urbizu-Serrano, A.2    Farfan, M.3    Fuste, M.C.4    Loren, J.G.5
  • 41
    • 37849048682 scopus 로고    scopus 로고
    • Lactobacillus strain diversity based on partial hsp60 gene sequences and design of PCR-restriction fragment length polymorphism assays for species identification and differentiation
    • Blaiotta G, Fusco V, Ercolini D, Aponte M, Pepe O, et al. ((2008)) Lactobacillus strain diversity based on partial hsp60 gene sequences and design of PCR-restriction fragment length polymorphism assays for species identification and differentiation. Appl Environ Microbiol 74:: 208--215.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 208-215
    • Blaiotta, G.1    Fusco, V.2    Ercolini, D.3    Aponte, M.4    Pepe, O.5
  • 42
    • 0034807791 scopus 로고    scopus 로고
    • New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences
    • Jian W, Zhu L, Dong X, ((2001)) New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences. Int J Syst Evol Microbiol 51:: 1633--1638.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1633-1638
    • Jian, W.1    Zhu, L.2    Dong, X.3
  • 44
    • 44349190402 scopus 로고    scopus 로고
    • Functional and phylogenetic characterization of Vaginolysin, the human-specific cytolysin from Gardnerella vaginalis
    • Gelber SE, Aguilar JL, Lewis KL, Ratner AJ, ((2008)) Functional and phylogenetic characterization of Vaginolysin, the human-specific cytolysin from Gardnerella vaginalis. J Bacteriol 190:: 3896--3903.
    • (2008) J Bacteriol , vol.190 , pp. 3896-3903
    • Gelber, S.E.1    Aguilar, J.L.2    Lewis, K.L.3    Ratner, A.J.4
  • 45
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A, ((2000)) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16:: 276--277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, ((1994)) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22:: 4673--4680.
    • (1994) Nucl Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 0003437299 scopus 로고
    • distributed by the author, Department of Genetics, University of Washington, Seattle, USA
    • Felsenstein J (1993) PHYLIP (Phylogeny Infererence Package) version 3.5c, distributed by the author, Department of Genetics, University of Washington, Seattle, USA.
    • (1993) PHYLIP (Phylogeny Infererence Package) version 3.5c
    • Felsenstein, J.1
  • 51
    • 0020665888 scopus 로고
    • Nonspecific vaginitis. Diagnostic criteria and microbial and epidemiologic associations
    • Amsel R, Totten PA, Spiegel CA, Chen KC, Eschenbach D, et al. ((1983)) Nonspecific vaginitis. Diagnostic criteria and microbial and epidemiologic associations. Am J Med 74:: 14--22.
    • (1983) Am J Med , vol.74 , pp. 14-22
    • Amsel, R.1    Totten, P.A.2    Spiegel, C.A.3    Chen, K.C.4    Eschenbach, D.5
  • 52
    • 34249686019 scopus 로고    scopus 로고
    • Asymptomatic bacterial vaginosis: is it time to treat?
    • Gibbs RS, ((2007)) Asymptomatic bacterial vaginosis: is it time to treat? Am J Obstet Gynecol 196:: 495--496.
    • (2007) Am J Obstet Gynecol , vol.196 , pp. 495-496
    • Gibbs, R.S.1
  • 53
    • 34249669796 scopus 로고    scopus 로고
    • Asymptomatic bacterial vaginosis and intermediate flora as risk factors for adverse pregnancy outcome
    • Leitich H, Kiss H, ((2007)) Asymptomatic bacterial vaginosis and intermediate flora as risk factors for adverse pregnancy outcome. Best Pract Res Clin Obstet Gynaecol 21:: 375--390.
    • (2007) Best Pract Res Clin Obstet Gynaecol , vol.21 , pp. 375-390
    • Leitich, H.1    Kiss, H.2
  • 54
    • 0033833215 scopus 로고    scopus 로고
    • Wet smear compared with gram stain diagnosis of bacterial vaginosis in asymptomatic pregnant women
    • Mastrobattista JM, Bishop KD, Newton ER, ((2000)) Wet smear compared with gram stain diagnosis of bacterial vaginosis in asymptomatic pregnant women. Obstet Gynecol 96:: 504--506.
    • (2000) Obstet Gynecol , vol.96 , pp. 504-506
    • Mastrobattista, J.M.1    Bishop, K.D.2    Newton, E.R.3
  • 55
    • 69549129476 scopus 로고    scopus 로고
    • The 'rare biosphere': a reality check
    • Reeder J, Knight R, ((2009)) The 'rare biosphere': a reality check. Nature Meth 6:: 636--637.
    • (2009) Nature Meth , vol.6 , pp. 636-637
    • Reeder, J.1    Knight, R.2
  • 56
    • 0023991756 scopus 로고    scopus 로고
    • International Committee on Systematic Bacteriology announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics
    • International Committee on Systematic Bacteriology announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. J Appl Microbiol 64:: 283--284.
    • J Appl Microbiol , vol.64 , pp. 283-284
  • 57
    • 0035433897 scopus 로고    scopus 로고
    • Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays
    • Cho JC, Tiedje JM, ((2001)) Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays. Appl Environ Microbiol 67:: 3677--3682.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3677-3682
    • Cho, J.C.1    Tiedje, J.M.2
  • 58
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter M, Rossello-Mora R, ((2009)) Shifting the genomic gold standard for the prokaryotic species definition. Proc Nat Acad Sci USA 106:: 19126--19131.
    • (2009) Proc Nat Acad Sci USA , vol.106 , pp. 19126-19131
    • Richter, M.1    Rossello-Mora, R.2
  • 59
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • Zeigler DR, ((2003)) Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int J Syst Evol Microbiol 53:: 1893--1900.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1893-1900
    • Zeigler, D.R.1
  • 61
    • 0035478408 scopus 로고    scopus 로고
    • Gardnerella vaginalis isolated from patients with bacterial vaginosis and from patients with healthy vaginal ecosystems
    • Aroutcheva AA, Simoes JA, Behbakht K, Faro S, ((2001)) Gardnerella vaginalis isolated from patients with bacterial vaginosis and from patients with healthy vaginal ecosystems. Clin Infect Dis 33:: 1022--1027.
    • (2001) Clin Infect Dis , vol.33 , pp. 1022-1027
    • Aroutcheva, A.A.1    Simoes, J.A.2    Behbakht, K.3    Faro, S.4
  • 62
    • 54549106987 scopus 로고    scopus 로고
    • Importance of isolation and biotypization of Gardnerella vaginalis in diagnosis of bacterial vaginosis
    • Numanovic F, Hukic M, Nurkic M, Gegic M, Delibegovic Z, et al. ((2008)) Importance of isolation and biotypization of Gardnerella vaginalis in diagnosis of bacterial vaginosis. Bosn J Basic Med Sci 8:: 270--276.
    • (2008) Bosn J Basic Med Sci , vol.8 , pp. 270-276
    • Numanovic, F.1    Hukic, M.2    Nurkic, M.3    Gegic, M.4    Delibegovic, Z.5
  • 64
    • 84860515168 scopus 로고    scopus 로고
    • Genetic and biochemical diversity of Gardnerella vaginalis strains isolated from women with bacterial vaginosis
    • Pleckaityte M, Janulaitiene M, Lasickiene R, Zvirbliene A, ((2012)) Genetic and biochemical diversity of Gardnerella vaginalis strains isolated from women with bacterial vaginosis. FEMS Immunol Med Microbiol 65:: 69--77.
    • (2012) FEMS Immunol Med Microbiol , vol.65 , pp. 69-77
    • Pleckaityte, M.1    Janulaitiene, M.2    Lasickiene, R.3    Zvirbliene, A.4
  • 65
    • 71549128684 scopus 로고    scopus 로고
    • Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs using oligonucleotide-coupled fluorescent microspheres
    • Dumonceaux TJ, Schellenberg J, Goleski V, Hill JE, Jaoko W, et al. ((2009)) Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs using oligonucleotide-coupled fluorescent microspheres. J Clin Microbiol 47:: 4067--4077.
    • (2009) J Clin Microbiol , vol.47 , pp. 4067-4077
    • Dumonceaux, T.J.1    Schellenberg, J.2    Goleski, V.3    Hill, J.E.4    Jaoko, W.5
  • 66
    • 66249086220 scopus 로고    scopus 로고
    • Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening canine fecal samples
    • Chaban B, Musil KM, Himsworth CG, Hill JE, ((2009)) Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening canine fecal samples. Appl Environ Microbiol 75:: 3055--3061.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3055-3061
    • Chaban, B.1    Musil, K.M.2    Himsworth, C.G.3    Hill, J.E.4
  • 67
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM, ((2002)) What are bacterial species? Annu Rev Microbiol 56:: 457--487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.