Phylogenetic and molecular evolution of the ADAM (A Disintegrin And Metalloprotease) gene family from Xenopus tropicalis, to Mus musculus, Rattus norvegicus, and Homo sapiens

Gene

Volumn 507, Issue 1, 2012, Pages 36-43

  Long, Jiaoyue ^a   Li, Meng ^b   Ren, Qian ^a,c   Zhang, Chiyu ^b   Fan, Jing ^a,e   Duan, Yiyuan ^a   Chen, Jun ^a   Li, Bo ^a   Deng, Linhong ^a,d  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b JIANGSU UNIVERSITY   (China)

^c NANJING NORMAL UNIVERSITY   (China)

^d CHANGZHOU UNIVERSITY   (China)

^e SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

ADAM; Gene duplication; Gene synteny; Phylogeny; Positive selection

Indexed keywords

ADAM PROTEIN;

ARTICLE; HUMAN; MOLECULAR EVOLUTION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RAT; SYNTENY; XENOPUS TROPICALIS;

ADAM PROTEINS; ANIMALS; EVOLUTION, MOLECULAR; GENOME; GENOME, HUMAN; HUMANS; MICE; PHYLOGENY; RATS; SEQUENCE ALIGNMENT; XENOPUS;

AMPHIBIA; HOMO SAPIENS; MAMMALIA; MUS MUSCULUS; RATTUS NORVEGICUS; RODENTIA; XENOPUS TROPICALIS;

EID: 84864977995     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.07.016     Document Type: Article

References (47)

1. Becherer J.D., Blobel C.P. Biochemical properties and functions of membrane-anchored metalloprotease-disintegrin proteins (ADAMs). Curr. Top. Dev. Biol. 2003, 54:101-123.
2. Brocker C.N., Vasiliou V., Nebert D.W. Evolutionary divergence and functions of the ADAM and ADAMTs gene families. Hum. Genom. 2009, 4:43-55.
3. Cao Y., Kang Q., Zhao Z., Zolkiewska A. Intracellular processing of metalloprotease disintegrin ADAM12. J. Biol. Chem. 2002, 277:26403-26411.
4. Cerretti D.P., DuBose R.F., Black R.A., Nelson N. Isolation of two novel metalloproteinase-disintegrin (ADAM) cDNAs that show testis-specific gene expression. Biochem. Biophys. Res. Commun. 1999, 263:810-815.
5. Cho C., Ge H., Branciforte D., Primakoff P., Myles D.G. Analysis of mouse fertilin in wild-type and fertilin beta(-/-) sperm: evidence for C-terminal modification, alpha/beta dimerization, and lack of essential role of fertilin alpha in sperm-egg fusion. Dev. Biol. 2000, 222:289-295.
6. Choi I., Woo J.M., Hong S., Jung Y.K., Kim D.H., Cho C. Identification and characterization of ADAM32 with testis-predominant gene expression. Gene 2003, 304:151-162.
7. Choi I., et al. Characterization and comparative genomic analysis of intronless Adams with testicular gene expression. Genomics 2004, 83:636-646.
8. Civetta A. Positive selection within sperm-egg adhesion domains of fertilin: an ADAM gene with a potential role in fertilization. Mol. Biol. Evol. 2003, 20:21-29.
9. Clark A.G., et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007, 450:203-218.
10. Dorus S., Wasbrough E.R., Busby J., Wilkin E.C., Karr T.L. Sperm proteomics reveals intensified selection on mouse sperm membrane and acrosome genes. Mol. Biol. Evol. 2010, 27:1235-1246.
11. Duffy M.J., Lynn D.J., Lloyd A.T., O'Shea C.M. The ADAMs family of proteins: from basic studies to potential clinical applications. Thromb. Haemost. 2003, 89:622-631.
12. Edwards D.R., Handsley M.M., Pennington C.J. The ADAM metalloproteinases. Mol. Aspects Med. 2008, 29:258-289.
13. Gandy S., Petanceska S. Regulation of Alzheimer beta-amyloid precursor trafficking and metabolism. Biochim. Biophys. Acta 2000, 1502:44-52.
14. Glassey B., Civetta A. Positive selection at reproductive ADAM genes with potential intercellular binding activity. Mol. Biol. Evol. 2004, 21:851-859.
15. Haerty W., et al. Evolution in the fast lane: rapidly evolving sex-related genes in drosophila. Genetics 2007, 177:1321-1335.
16. Han C., et al. Comprehensive analysis of reproductive ADAMs: relationship of ADAM4 and ADAM6 with an ADAM complex required for fertilization in mice. Biol. Reprod. 2009, 80:1001-1008.
17. Hooft van Huijsduijnen R. ADAM 20 and 21; two novel human testis-specific membrane metalloproteases with similarity to fertilin-alpha. Gene 1998, 206:273-282.
18. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
19. Jimenez S., Lawton-Rauh A.L., Reighard G.L., Abbott A.G., Bielenberg D.G. Phylogenetic analysis and molecular evolution of the dormancy associated MADS-box genes from peach. BMC Plant Biol. 2009, 9:81.
20. Kim E., et al. Mouse sperm lacking ADAM1b/ADAM2 fertilin can fuse with the egg plasma membrane and effect fertilization. J. Biol. Chem. 2006, 281:5634-5639.
21. Kim T., et al. Expression and relationship of male reproductive ADAMs in mouse. Biol. Reprod. 2006, 74:744-750.
22. Lammich S., et al. Constitutive and regulated alpha-secretase cleavage of Alzheimer's amyloid precursor protein by a disintegrin metalloprotease. Proc. Natl. Acad. Sci. U.S.A. 1999, 96:3922-3927.
23. Maskos K., et al. Crystal structure of the catalytic domain of human tumor necrosis factor-alpha-converting enzyme. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:3408-3412.
24. Mochizuki S., Okada Y. ADAMs in cancer cell proliferation and progression. Cancer Sci. 2007, 98:621-628.
25. Moss M.L., Bartsch J.W. Therapeutic benefits from targeting of ADAM family members. Biochemistry 2004, 43:7227-7235.
26. Nishimura H., Cho C., Branciforte D.R., Myles D.G., Primakoff P. Analysis of loss of adhesive function in sperm lacking cyritestin or fertilin beta. Dev. Biol. 2001, 233:204-213.
27. Nishimura H., Kim E., Nakanishi T., Baba T. Possible function of the ADAM1a/ADAM2 fertilin complex in the appearance of ADAM3 on the sperm surface. J. Biol. Chem. 2004, 279:34957-34962.
28. Primakoff P., Myles D.G. The ADAM gene family: surface proteins with adhesion and protease activity. Trends Genet. 2000, 16:83-87.
29. Puente X.S., Sanchez L.M., Gutierrez-Fernandez A., Velasco G., Lopez-Otin C. A genomic view of the complexity of mammalian proteolytic systems. Biochem. Soc. Trans. 2005, 33:331-334.
30. Seals D.F., Courtneidge S.A. The ADAMs family of metalloproteases: multidomain proteins with multiple functions. Genes Dev. 2003, 17:7-30.
31. Singh R.S., Kulathinal R.J. Sex gene pool evolution and speciation: a new paradigm. Genes Genet. Syst. 2000, 75:119-130.
32. Stein K.K., Go J.C., Primakoff P., Myles D.G. Defects in secretory pathway trafficking during sperm development in Adam2 knockout mice. Biol. Reprod. 2005, 73:1032-1038.
33. Stone A.L., Kroeger M., Sang Q.X. Structure-function analysis of the ADAM family of disintegrin-like and metalloproteinase-containing proteins (review). J. Protein Chem. 1999, 18:447-465.
34. Swanson W.J., Vacquier V.D. The rapid evolution of reproductive proteins. Nat. Rev. Genet. 2002, 3:137-144.
35. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
36. Van Eerdewegh P., et al. Association of the ADAM33 gene with asthma and bronchial hyperresponsiveness. Nature 2002, 418:426-430.
37. Van Wart H.E., Birkedal-Hansen H. The cysteine switch: a principle of regulation of metalloproteinase activity with potential applicability to the entire matrix metalloproteinase gene family. Proc Natl. Acad. Sci. U.S.A. 1990, 87:5578-5582.
38. Wei S., et al. Conservation and divergence of ADAM family proteins in the Xenopus genome. BMC Evol. Biol. 2010, 10:211.
39. Weskamp G., Blobel C.P. A family of cellular proteins related to snake venom disintegrins. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:2748-2751.
40. White J., Bridges L., DeSimone D., Tomczuk M., Wolfsberg T. Introduction to the ADAM family. The ADAM Family of Proteases, Proteases in Biology and Disease 2005, Vol. 4:1-28. Springer, US. N.M. Hooper, U. Lendeckel (Eds.).
41. Wolfsberg T.G., Primakoff P., Myles D.G., White J.M. ADAM, a novel family of membrane proteins containing A Disintegrin And Metalloprotease domain: multipotential functions in cell-cell and cell-matrix interactions. J. Cell Biol. 1995, 131:275-278.
42. Wolfsberg T.G., et al. ADAM, a widely distributed and developmentally regulated gene family encoding membrane proteins with a disintegrin and metalloprotease domain. Dev. Biol. 1995, 169:378-383.
43. Wyckoff G.J., Wang W., Wu C.I. Rapid evolution of male reproductive genes in the descent of man. Nature 2000, 403:304-309.
44. Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
45. Zhu G.Z., Lin Y., Myles D.G., Primakoff P. Identification of four novel ADAMs with potential roles in spermatogenesis and fertilization. Gene 1999, 234:227-237.
46. Zhu G.Z., Myles D.G., Primakoff P. Testase 1 (ADAM 24) a plasma membrane-anchored sperm protease implicated in sperm function during epididymal maturation or fertilization. J. Cell Sci. 2001, 114:1787-1794.
47. Zhu G.Z., Gupta S., Myles D.G., Primakoff P. Testase 1 (ADAM 24) a sperm surface metalloprotease is required for normal fertility in mice. Mol. Reprod. Dev. 2009, 76:1106-1114.