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Volumn 29, Issue 8, 2012, Pages 510-517

The repertoire of chemical defense genes in the coral acropora digitifera genome

Author keywords

Acropora; coral; gene expansion; genome; stress responce

Indexed keywords

ANTIOXIDANT; HEAT SHOCK PROTEIN; METAL;

EID: 84864911390     PISSN: 02890003     EISSN: None     Source Type: Journal    
DOI: 10.2108/zsj.29.510     Document Type: Article
Times cited : (17)

References (52)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • Prottest: Selection of bestfit models of protein evolution
    • Abascal F, Zardoya R, Pasada D (2005) ProtTest: selection of bestfit models of protein evolution. Bioinformatics 21: 2104-2105
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Pasada, D.3
  • 2
    • 0023700026 scopus 로고
    • Is the metal binding protein metallothionein present in the coelenterate hydra attenuata?
    • Andersen RA, Wiger R, Daae HL, Eriksen KDH (1988) Is the metal binding protein metallothionein present in the coelenterate Hydra attenuata? J Comp Physiol 91: 553-557
    • (1988) J Comp Physiol , vol.91 , pp. 553-557
    • Andersen, R.A.1    Wiger, R.2    Daae, H.L.3    Eriksen, K.D.H.4
  • 5
    • 26444618665 scopus 로고    scopus 로고
    • Arylamine n-acetyltransferases: What we learn from genes and genomes
    • Boukouvala S, Fakis G (2005) Arylamine N-acetyltransferases: what we learn from genes and genomes. Drug Metab Rev 37: 511-564
    • (2005) Drug Metab Rev , vol.37 , pp. 511-564
    • Boukouvala, S.1    Fakis, G.2
  • 6
    • 48249136950 scopus 로고    scopus 로고
    • One-third of reef-building corals face elevated extinction risk from climate change and local impacts
    • Carpenter KE, Abrar M, Aeby G, Aronson RB, Banks S, et al. (2008) One-third of reef-building corals face elevated extinction risk from climate change and local impacts. Science 321: 560-563
    • (2008) Science , vol.321 , pp. 560-563
    • Carpenter, K.E.1    Abrar, M.2    Aeby, G.3    Aronson, R.B.4    Banks, S.5
  • 7
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 9
    • 33751438997 scopus 로고    scopus 로고
    • Environmental populations of symbiotic dinoflagellates in the genus symbiodinium can initiate symbioses with reef cnidarians
    • Coffroth MA, Lewis CF, Santos SR, Weaver JL (2006) Environmental populations of symbiotic dinoflagellates in the genus Symbiodinium can initiate symbioses with reef cnidarians. Curr Biol 16: R985-987
    • (2006) Curr Biol , vol.16
    • Coffroth, M.A.1    Lewis, C.F.2    Santos, S.R.3    Weaver, J.L.4
  • 10
    • 33845659940 scopus 로고    scopus 로고
    • Molecular characterization of two superoxide dismutases from hydra vulgaris
    • Dash B, Metz R, Huebner HJ, Porter W, Phillips TD (2007) Molecular characterization of two superoxide dismutases from Hydra vulgaris. Gene 387: 93-108
    • (2007) Gene , vol.387 , pp. 93-108
    • Dash, B.1    Metz, R.2    Huebner, H.J.3    Porter, W.4    Phillips, T.D.5
  • 11
    • 25844487733 scopus 로고    scopus 로고
    • Evolution of the atp-binding cassette (abc) transporter superfamily in vertebrates
    • Dean M, Annilo T (2005) Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates. Annu Rev Genomics Hum Genet 6: 123-142
    • (2005) Annu Rev Genomics Hum Genet , vol.6 , pp. 123-142
    • Dean, M.1    Annilo, T.2
  • 12
    • 58149250145 scopus 로고    scopus 로고
    • Declining coral calcification on the great barrier reef
    • De'ath G, Lough JM, Fabricius KE (2009) Declining coral calcification on the Great Barrier Reef. Science 323: 116-119
    • (2009) Science , vol.323 , pp. 116-119
    • De'ath, G.1    Lough, J.M.2    Fabricius, K.E.3
  • 14
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden markov models
    • Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 16
    • 56349172169 scopus 로고    scopus 로고
    • Environmental sensing and response genes in cnidaria: The chemical defensome in the sea anemone nematostella vectensis
    • Goldstone JV (2008) Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis. Cell Biol Toxicol 24: 483-502
    • (2008) Cell Biol Toxicol , vol.24 , pp. 483-502
    • Goldstone, J.V.1
  • 17
    • 37549041908 scopus 로고    scopus 로고
    • The chemical defensome: Environmental sensing and response genes in the strongylocentrotus purpuratus genome
    • Goldstone JV, Hamdoun A, Cole BJ, Howard-Ashby M, Nebert DW, et al. (2006) The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome. Dev Biol 300: 366-384
    • (2006) Dev Biol , vol.300 , pp. 366-384
    • Goldstone, J.V.1    Hamdoun, A.2    Cole, B.J.3    Howard-Ashby, M.4    Nebert, D.W.5
  • 18
    • 74549125386 scopus 로고    scopus 로고
    • Seaview version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224
    • (2010) Mol Biol Evol , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 20
    • 0022555879 scopus 로고
    • Metallothionein
    • Hamer DH (1986) Metallothionein. Annu Rev Biochem 55: 913-951
    • (1986) Annu Rev Biochem , vol.55 , pp. 913-951
    • Hamer, D.H.1
  • 21
    • 0029257302 scopus 로고
    • Induction of 70-kd heat shock protein in scleractinian corals by elevated temperature: Significance for coral bleaching
    • Hayes RL, King CM (1995) Induction of 70-kD heat shock protein in scleractinian corals by elevated temperature: significance for coral bleaching. Mol Mar Biol Biotechnol 4: 36-42
    • (1995) Mol Mar Biol Biotechnol , vol.4 , pp. 36-42
    • Hayes, R.L.1    King, C.M.2
  • 23
    • 0042242564 scopus 로고    scopus 로고
    • Climate change, human impacts, and the resilience of coral reefs
    • Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, et al. (2003) Climate change, human impacts, and the resilience of coral reefs. Science 301: 929-933
    • (2003) Science , vol.301 , pp. 929-933
    • Hughes, T.P.1    Baird, A.H.2    Bellwood, D.R.3    Card, M.4    Connolly, S.R.5
  • 24
    • 0033860823 scopus 로고    scopus 로고
    • A comparison of methods for measuring acute toxicity to hydra vulgaris
    • Karntanut W, Pascoe D (2000) A comparison of methods for measuring acute toxicity to Hydra vulgaris. Chemosphere 41: 1543-1548
    • (2000) Chemosphere , vol.41 , pp. 1543-1548
    • Karntanut, W.1    Pascoe, D.2
  • 25
    • 0035986237 scopus 로고    scopus 로고
    • The toxicity of copper, cadmium and zinc to four different hydra (cnidaria: Hydrozoa)
    • Karntanut W, Pascoe D (2002) The toxicity of copper, cadmium and zinc to four different Hydra (Cnidaria: Hydrozoa). Chemosphere 47: 1059-1064
    • (2002) Chemosphere , vol.47 , pp. 1059-1064
    • Karntanut, W.1    Pascoe, D.2
  • 27
    • 0345708353 scopus 로고    scopus 로고
    • The mammalianbasic helix-loop-helix/pas family of transcriptional regulators
    • Kewley RJ, Whitelaw ML, Chapman-Smith A (2004) The mammalianbasic helix-loop-helix/PAS family of transcriptional regulators. Int J Biochem Cell Biol 36: 189-204
    • (2004) Int J Biochem Cell Biol , vol.36 , pp. 189-204
    • Kewley, R.J.1    Whitelaw, M.L.2    Chapman-Smith, A.3
  • 29
    • 34447105299 scopus 로고    scopus 로고
    • Understanding the mechanisms of zinc-sensing by metal-response element binding transcription factor-1 (mtf-1)
    • Laity JH, Andrews GK (2007) Understanding the mechanisms of zinc-sensing by metal-response element binding transcription factor-1 (MTF-1). Arch Biochem Biophys 463: 201-210
    • (2007) Arch Biochem Biophys , vol.463 , pp. 201-210
    • Laity, J.H.1    Andrews, G.K.2
  • 31
    • 33845790738 scopus 로고    scopus 로고
    • Catalase characterization and implication in bleaching of a symbiotic sea anemone
    • Merle PL, Sabourault C, Richier S, Allemand D, Furla P (2007) Catalase characterization and implication in bleaching of a symbiotic sea anemone. Free Radic Biol Med 42: 236-246
    • (2007) Free Radic Biol Med , vol.42 , pp. 236-246
    • Merle, P.L.1    Sabourault, C.2    Richier, S.3    Allemand, D.4    Furla, P.5
  • 32
    • 0037471574 scopus 로고    scopus 로고
    • Differential accumulation of cadmium and changes in glutathione levels as afunction of symbiotic state in the sea anemone anthopleura elegantissima
    • Mitchelmore CL, Ringwood AH, Weis VM (2003a) Differential accumulation of cadmium and changes in glutathione levels as afunction of symbiotic state in the sea anemone Anthopleura elegantissima. J Exp Mar Biol Ecol 284: 71-85
    • (2003) J Exp Mar Biol Ecol , vol.284 , pp. 71-85
    • Mitchelmore, C.L.1    Ringwood, A.H.2    Weis, V.M.3
  • 33
    • 0038722208 scopus 로고    scopus 로고
    • Differential accumulation of heavy metals in the sea anemone anthopleura elegantissima as a function of symbiotic state
    • Mitchelmore CL, Verde EA, Ringwood AH, Weis VM (2003b) Differential accumulation of heavy metals in the sea anemone Anthopleura elegantissima as a function of symbiotic state. Aquat Toxicol 64: 317-329
    • (2003) Aquat Toxicol , vol.64 , pp. 317-329
    • Mitchelmore, C.L.1    Verde, E.A.2    Ringwood, A.H.3    Weis, V.M.4
  • 34
    • 0032973170 scopus 로고    scopus 로고
    • Ecological goods and services of coral reef ecosystems
    • Moberg F, Folke C (1999) Ecological goods and services of coral reef ecosystems. Ecol Econ 29: 215-233
    • (1999) Ecol Econ , vol.29 , pp. 215-233
    • Moberg, F.1    Folke, C.2
  • 35
    • 39149136564 scopus 로고    scopus 로고
    • Embryogenesis in the reef-building coral acropora spp
    • Okubo N, Motokawa T (2007) Embryogenesis in the reef-building coral Acropora spp. Zool Sci 24: 1169-1177
    • (2007) Zool Sci , vol.24 , pp. 1169-1177
    • Okubo, N.1    Motokawa, T.2
  • 36
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317: 86-94
    • (2007) Science , vol.317 , pp. 86-94
    • Putnam, N.H.1    Srivastava, M.2    Hellsten, U.3    Dirks, B.4    Chapman, J.5
  • 37
    • 46449109976 scopus 로고    scopus 로고
    • Genomic survey of candidate stress-response genes in the estuarine anemone nematostella vectensis
    • Reitzel AM, Sullivan JC, Traylor-Knowles N, Finnerty JR (2008) Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis. Biol Bull 214: 233-254
    • (2008) Biol Bull , vol.214 , pp. 233-254
    • Reitzel, A.M.1    Sullivan, J.C.2    Traylor-Knowles, N.3    Finnerty, J.R.4
  • 38
    • 0037424787 scopus 로고    scopus 로고
    • Characterization of superoxide dismutases in anoxia-and hyperoxia-tolerant symbiotic cnidarians
    • Richier S, Merle PL, Furla P, Pigozzi D, Sola F, Allemand D (2003) Characterization of superoxide dismutases in anoxia-and hyperoxia-tolerant symbiotic cnidarians. Biochim Biophys Acta 1621: 84-91
    • (2003) Biochim Biophys Acta , vol.1621 , pp. 84-91
    • Richier, S.1    Merle, P.L.2    Furla, P.3    Pigozzi, D.4    Sola, F.5    Allemand, D.6
  • 40
    • 0035543258 scopus 로고    scopus 로고
    • Competition for space among sessile marine invertebrates: Changes in hsp70 expression in two pacific cnidarians
    • Rossi S, Snyder MJ (2001) Competition for space among sessile marine invertebrates: changes in HSP70 expression in two Pacific cnidarians. Biol Bull 201: 385-393
    • (2001) Biol Bull , vol.201 , pp. 385-393
    • Rossi, S.1    Snyder, M.J.2
  • 41
    • 0242690056 scopus 로고    scopus 로고
    • Purification, cdna cloning and expression of a cadmium-inducible cysteine-rich metallothionein-like protein from the marine sponge suberites domuncula
    • Schröder HC, Shostak K, Gamulin V, Lacorn M, Skorokhod A, Kavsan V, et al. (2000) Purification, cDNA cloning and expression of a cadmium-inducible cysteine-rich metallothionein-like protein from the marine sponge Suberites domuncula. Mar Ecol Prog Ser 200: 149-157
    • (2000) Mar Ecol Prog Ser , vol.200 , pp. 149-157
    • Schröder, H.C.1    Shostak, K.2    Gamulin, V.3    Lacorn, M.4    Skorokhod, A.5    Kavsan, V.6
  • 42
    • 27644473239 scopus 로고    scopus 로고
    • Molecular biomarkers and adaptation to environmental stress in moon jelly (aurelia spp.)
    • Schroth W, Ender A, Schierwater B (2005) Molecular biomarkers and adaptation to environmental stress in moon jelly (Aurelia spp.). Mar Biotechnol 7: 449-461
    • (2005) Mar Biotechnol , vol.7 , pp. 449-461
    • Schroth, W.1    Ender, A.2    Schierwater, B.3
  • 43
    • 53349156296 scopus 로고    scopus 로고
    • Coral life history and symbiosis: Functional genomic resources for two reef building caribbean corals, acropora palmata and montastraea faveolata
    • Schwarz JA, Brokstein PB, Voolstra C, Terry AY, Manohar CF, Miller DJ, et al. (2008) Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata. BMC Genomics 9: 97
    • (2008) BMC Genomics , vol.97 , Issue.9
    • Schwarz, J.A.1    Brokstein, P.B.2    Voolstra, C.3    Terry, A.Y.4    Manohar, C.F.5    Miller, D.J.6
  • 44
    • 34047243800 scopus 로고    scopus 로고
    • Xenobiotic-metabolizing enzymes involved in activation and detoxification of carcinogenic polycyclic aromatic hydrocarbons
    • Shimada T (2006) Xenobiotic-metabolizing enzymes involved in activation and detoxification of carcinogenic polycyclic aromatic hydrocarbons. Drug Metab Pharmacokinet 4: 257-276
    • (2006) Drug Metab Pharmacokinet , vol.4 , pp. 257-276
    • Shimada, T.1
  • 45
    • 80051936630 scopus 로고    scopus 로고
    • Using the acropora digitifera genome to understand coral responses to environmental change
    • Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, et al. (2011) Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476: 320-323
    • (2011) Nature , vol.476 , pp. 320-323
    • Shinzato, C.1    Shoguchi, E.2    Kawashima, T.3    Hamada, M.4    Hisata, K.5
  • 46
    • 33947252158 scopus 로고    scopus 로고
    • Origin and diversification of the basic helix-loop-helix gene family in metazoans: Insights from comparative genomics
    • Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D, et al. (2007) Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol 7: 33
    • (2007) BMC Evol Biol , vol.7 , pp. 33
    • Simionato, E.1    Ledent, V.2    Richards, G.3    Thomas-Chollier, M.4    Kerner, P.5    Coornaert, D.6
  • 47
    • 33750403801 scopus 로고    scopus 로고
    • Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RaxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 48
    • 33748182761 scopus 로고    scopus 로고
    • The evolutionary history of symbiodinium and scleractinian hosts-symbiosis, diversity, and the effect of climate change
    • Stat M, Carter D, Hoegh-Guldberg O (2006) The evolutionary history of Symbiodinium and scleractinian hosts-Symbiosis, diversity, and the effect of climate change. Perspect Plant Ecol Evol Syst 8: 23-43
    • (2006) Perspect Plant Ecol Evol Syst , vol.8 , pp. 23-43
    • Stat, M.1    Carter, D.2    Hoegh-Guldberg, O.3
  • 49
    • 43049175248 scopus 로고    scopus 로고
    • Photosynthetic symbioses in animals
    • Venn AA, Loram JE, Douglas AE (2008) Photosynthetic symbioses in animals. J Exp Bot 59: 1069-1080
    • (2008) J Exp Bot , vol.59 , pp. 1069-1080
    • Venn, A.A.1    Loram, J.E.2    Douglas, A.E.3
  • 50
    • 55549147187 scopus 로고    scopus 로고
    • Cellular mechanisms of cnidarian bleaching: Stress causes the collapse of symbiosis
    • Weis VM (2008) Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis. J Exp Biol 211: 3059-3066
    • J Exp Biol 211 , vol.2008 , pp. 3059-3066
    • Weis, V.M.1
  • 51
    • 0003517187 scopus 로고    scopus 로고
    • Australian Institute of Marine Science (AIMS), Townsville, Australia
    • Wilkinson C (2004) Status of Coral Reefs of the World. Australian Institute of Marine Science (AIMS), Townsville, Australia
    • (2004) Status of Coral Reefs of the World
    • Wilkinson, C.1
  • 52
    • 9744281222 scopus 로고    scopus 로고
    • Differential susceptibility to oxidative stress of two scleractinian corals: Antioxidant functioning of mycosporine-glycine
    • Yakovleva I, Bhagooli R, Takemura A, Hidaka M (2004) Differential susceptibility to oxidative stress of two scleractinian corals: antioxidant functioning of mycosporine-glycine. Comp Biochem Physiol B Biochem Mol Biol 139: 721-730
    • (2004) Comp Biochem Physiol B Biochem Mol Biol , vol.139 , pp. 721-730
    • Yakovleva, I.1    Bhagooli, R.2    Takemura, A.3    Hidaka, M.4


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