메뉴 건너뛰기




Volumn 21, Issue 8, 2012, Pages 1229-1235

-Omics and cancer biomarkers: Link to the biological truth or bear the consequences

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

EID: 84864809308     PISSN: 10559965     EISSN: None     Source Type: Journal    
DOI: 10.1158/1055-9965.EPI-12-0635     Document Type: Editorial
Times cited : (17)

References (39)
  • 1
    • 78651394465 scopus 로고    scopus 로고
    • Bring on the biomarkers
    • Poste G. Bring on the biomarkers. Nature 2011;469:156-7.
    • (2011) Nature , vol.469 , pp. 156-157
    • Poste, G.1
  • 2
    • 52949094993 scopus 로고    scopus 로고
    • Proteomics ponders prime time
    • Service RF. Proteomics ponders prime time. Science 2008;321:1758-61.
    • (2008) Science , vol.321 , pp. 1758-1761
    • Service, R.F.1
  • 3
    • 84864819611 scopus 로고    scopus 로고
    • Available from: [accessed June 27, 2012]
    • The Cancer Genome Atlas. Available from: http://cancergenome.nih.gov [accessed June 27, 2012].
    • The Cancer Genome Atlas
  • 4
    • 84856536814 scopus 로고    scopus 로고
    • Primary colorectal cancers and their subsequent hepatic metastases are genetically different: Implications for selection of patients for targeted treatment
    • Vermaat JS, Nijman IJ, Koudijs MJ, Gerritse FL, Scherer SJ, Mokry M, et al. Primary colorectal cancers and their subsequent hepatic metastases are genetically different: implications for selection of patients for targeted treatment. Clin Cancer Res 2012;18:688-99.
    • (2012) Clin Cancer Res , vol.18 , pp. 688-699
    • Vermaat, J.S.1    Nijman, I.J.2    Koudijs, M.J.3    Gerritse, F.L.4    Scherer, S.J.5    Mokry, M.6
  • 5
    • 21244506471 scopus 로고    scopus 로고
    • Kinase substrate protein microarray analysis of human colon cancer and hepatic metastasis
    • DOI 10.1016/j.cccn.2005.03.024, PII S0009898105001956, Clinical Proteomics: Translation of New Insights into Clinical Practice
    • Belluco C, Mammano E, Petricoin E, Prevedello L, Calvert V, Liotta L, et al. Kinase substrate protein microarray analysis of human colon cancer and hepatic metastasis. Clin Chim Acta 2005;357:180-3. (Pubitemid 40884598)
    • (2005) Clinica Chimica Acta , vol.357 , Issue.2 , pp. 180-183
    • Belluco, C.1    Mammano, E.2    Petricoin, E.3    Prevedello, L.4    Calvert, V.5    Liotta, L.6    Nitti, D.7    Lise, M.8
  • 6
    • 79960467037 scopus 로고    scopus 로고
    • Ischemic time impacts biological integrity of phospho-proteins in PI3K/Akt, Erk/MAPK, and p38 MAPK signaling networks
    • Holzer TR, Fulford AD, Arkins AM, Grondin JM, Mundy CW, Nasir A, et al. Ischemic time impacts biological integrity of phospho-proteins in PI3K/Akt, Erk/MAPK, and p38 MAPK signaling networks. Anticancer Res 2011;31:2073-81.
    • (2011) Anticancer Res , vol.31 , pp. 2073-2081
    • Holzer, T.R.1    Fulford, A.D.2    Arkins, A.M.3    Grondin, J.M.4    Mundy, C.W.5    Nasir, A.6
  • 7
    • 82355171048 scopus 로고    scopus 로고
    • Reduction of preanalytical variability in specimen procurement for molecular profiling
    • Espina V, Mueller C. Reduction of preanalytical variability in specimen procurement for molecular profiling. Methods Mol Biol 2012;823:49-57.
    • (2012) Methods Mol Biol , vol.823 , pp. 49-57
    • Espina, V.1    Mueller, C.2
  • 8
    • 55049089416 scopus 로고    scopus 로고
    • A portrait of tissue phosphoprotein stability in the clinical tissue procurement process
    • Espina V, Edmiston KH, Heiby M, Pierobon M, Sciro M, Merritt B, et al. A portrait of tissue phosphoprotein stability in the clinical tissue procurement process. Mol Cell Proteomics 2008;7:1998-2018.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 1998-2018
    • Espina, V.1    Edmiston, K.H.2    Heiby, M.3    Pierobon, M.4    Sciro, M.5    Merritt, B.6
  • 9
    • 83755205824 scopus 로고    scopus 로고
    • The challenge and importance of standardizing pre-analytical variables in surgical pathology specimens for clinical care and translational research
    • Hicks DG, Boyce BF. The challenge and importance of standardizing pre-analytical variables in surgical pathology specimens for clinical care and translational research. Biotech Histochem 2012;87:14-7.
    • (2012) Biotech Histochem , vol.87 , pp. 14-17
    • Hicks, D.G.1    Boyce, B.F.2
  • 10
    • 80051733060 scopus 로고    scopus 로고
    • One-step preservation of phosphoproteins and tissue morphology at room temperature for diagnostic and research specimens
    • Mueller C, Edmiston KH, Carpenter C, Gaffney E, Ryan C, Ward R, et al. One-step preservation of phosphoproteins and tissue morphology at room temperature for diagnostic and research specimens. PLoS One 2011;6:e23780.
    • (2011) PLoS One , vol.6
    • Mueller, C.1    Edmiston, K.H.2    Carpenter, C.3    Gaffney, E.4    Ryan, C.5    Ward, R.6
  • 11
    • 70350215650 scopus 로고    scopus 로고
    • Tissue is alive: New technologies are needed to address the problems of protein biomarker pre-analytical variability
    • Espina V, Mueller C, Edmiston K, Sciro M, Petricoin EF, Liotta LA. Tissue is alive: new technologies are needed to address the problems of protein biomarker pre-analytical variability. Proteomics Clin Appl 2009;3:874-882.
    • (2009) Proteomics Clin Appl , vol.3 , pp. 874-882
    • Espina, V.1    Mueller, C.2    Edmiston, K.3    Sciro, M.4    Petricoin, E.F.5    Liotta, L.A.6
  • 12
    • 78549284015 scopus 로고    scopus 로고
    • Clinical application for the preservation of phospho-proteins through in situ tissue stabilization
    • Rountree CB, Van Kirk CA, You H, Ding W, Dang H, VanGuilder HD, et al. Clinical application for the preservation of phospho-proteins through in situ tissue stabilization. Proteome Sci 2010;8:61.
    • (2010) Proteome Sci , vol.8 , pp. 61
    • Rountree, C.B.1    Van Kirk, C.A.2    You, H.3    Ding, W.4    Dang, H.5    VanGuilder, H.D.6
  • 15
    • 33750219625 scopus 로고    scopus 로고
    • Deconfounding microarray analysis - Independent measurements of cell type proportions used in a regression model to resolve tissue heterogeneity bias
    • Jacobsen M, Repsilber D, Gutschmidt A, Neher A, Feldmann K, Mollenkopf HJ, et al. Deconfounding microarray analysis - independent measurements of cell type proportions used in a regression model to resolve tissue heterogeneity bias. Methods Inf Med 2006;45:557-6.
    • (2006) Methods Inf Med , vol.45 , pp. 557-566
    • Jacobsen, M.1    Repsilber, D.2    Gutschmidt, A.3    Neher, A.4    Feldmann, K.5    Mollenkopf, H.J.6
  • 16
    • 84860897302 scopus 로고    scopus 로고
    • Deciphering the key features of malignant tumor microenvironment for anti-cancer therapy
    • May 17. [Epub ahead of print]
    • Shang B, Zhang G, Pan Y, Zhou Q. Deciphering the key features of malignant tumor microenvironment for anti-cancer therapy. Cancer Microenviron. 2012 May 17. [Epub ahead of print].
    • (2012) Cancer Microenviron.
    • Shang, B.1    Zhang, G.2    Pan, Y.3    Zhou, Q.4
  • 17
    • 33745622375 scopus 로고    scopus 로고
    • Characterization of cell-type specific profiles in tissues and isolated cells from squamous cell carcinomas of the lung
    • DOI 10.1016/j.lungcan.2006.04.015, PII S0169500206002157
    • Hawthorn L, Stein L, Panzarella J, Loewen GM, Baumann H. Characterization of cell-type specific profiles in tissues and isolated cells from squamous cell carcinomas of the lung. Lung Cancer 2006;53:129-42. (Pubitemid 43994230)
    • (2006) Lung Cancer , vol.53 , Issue.2 , pp. 129-142
    • Hawthorn, L.1    Stein, L.2    Panzarella, J.3    Loewen, G.M.4    Baumann, H.5
  • 18
    • 84863288486 scopus 로고    scopus 로고
    • Dissection of stromal and cancer cell-derived signals in melanoma xenografts before and after treatment with DMXAA
    • Henare K, Wang L, Wang LC, Thomsen L, Tijono S, Chen CJ, et al. Dissection of stromal and cancer cell-derived signals in melanoma xenografts before and after treatment with DMXAA. Br J Cancer 2012;106:1134-47.
    • (2012) Br J Cancer , vol.106 , pp. 1134-1147
    • Henare, K.1    Wang, L.2    Wang, L.C.3    Thomsen, L.4    Tijono, S.5    Chen, C.J.6
  • 19
    • 84864818818 scopus 로고    scopus 로고
    • Active roles of tumor stroma in breast cancer metastasis
    • Khamis ZI, Sahab ZJ, Sang QX. Active roles of tumor stroma in breast cancer metastasis. Int J Breast Cancer 2012;2012:57402.
    • (2012) Int J Breast Cancer , vol.2012 , pp. 57402
    • Khamis, Z.I.1    Sahab, Z.J.2    Sang, Q.X.3
  • 20
    • 77951782308 scopus 로고    scopus 로고
    • Protein pathway biomarker analysis of human cancer reveals requirement for upfront cellular-enrichment processing
    • Silvestri A, Colombatti A, Calvert VS, Deng J, Mammano E, Belluco C, et al. Protein pathway biomarker analysis of human cancer reveals requirement for upfront cellular-enrichment processing. Lab Invest 2010;90:787-96.
    • (2010) Lab Invest , vol.90 , pp. 787-796
    • Silvestri, A.1    Colombatti, A.2    Calvert, V.S.3    Deng, J.4    Mammano, E.5    Belluco, C.6
  • 21
    • 45549107510 scopus 로고    scopus 로고
    • Multiplexed cell signaling analysis of human breast cancer applications for personalized therapy
    • Wulfkuhle JD, Speer R, Pierobon M, Laird J, Espina V, Deng J, et al. Multiplexed cell signaling analysis of human breast cancer applications for personalized therapy. J Proteome Res 2008;7:1508-17.
    • (2008) J Proteome Res , vol.7 , pp. 1508-1517
    • Wulfkuhle, J.D.1    Speer, R.2    Pierobon, M.3    Laird, J.4    Espina, V.5    Deng, J.6
  • 24
    • 83455207981 scopus 로고    scopus 로고
    • Global proteomics and metabolomics in cancer biomarker discovery
    • Issaq HJ, Fox SD, Chan KC, Veenstra TD. Global proteomics and metabolomics in cancer biomarker discovery. J Sep Sci 2011;34:3484-92.
    • (2011) J Sep Sci , vol.34 , pp. 3484-3492
    • Issaq, H.J.1    Fox, S.D.2    Chan, K.C.3    Veenstra, T.D.4
  • 25
    • 84860856325 scopus 로고    scopus 로고
    • Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate
    • Ebhardt HA, Sabidó E, Hüttenhain R, Collins B, Aebersold R. Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate. Proteomics 2012;12:1185-93.
    • (2012) Proteomics , vol.12 , pp. 1185-1193
    • Ebhardt, H.A.1    Sabidó, E.2    Hüttenhain, R.3    Collins, B.4    Aebersold, R.5
  • 26
    • 68049122014 scopus 로고    scopus 로고
    • The preclinical natural history of serous ovarian cancer: Defining the target for early detection
    • Brown PO, Palmer C. The preclinical natural history of serous ovarian cancer: defining the target for early detection. PLoS Med 2009;6:e1000114.
    • (2009) PLoS Med , vol.6
    • Brown, P.O.1    Palmer, C.2
  • 27
    • 84860869256 scopus 로고    scopus 로고
    • MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma
    • Domanski D, Percy AJ, Yang J, Chambers AG, Hill JS, Freue GV, et al. MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma. Proteomics 2012;12:1222-43.
    • (2012) Proteomics , vol.12 , pp. 1222-1243
    • Domanski, D.1    Percy, A.J.2    Yang, J.3    Chambers, A.G.4    Hill, J.S.5    Freue, G.V.6
  • 28
    • 77953565590 scopus 로고    scopus 로고
    • Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth
    • Huang PH, Miraldi ER, Xu AM, Kundukulam VA, Del Rosario AM, Flynn RA, et al. Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth. Mol Biosyst 2010;6:1227-37.
    • (2010) Mol Biosyst , vol.6 , pp. 1227-1237
    • Huang, P.H.1    Miraldi, E.R.2    Xu, A.M.3    Kundukulam, V.A.4    Del Rosario, A.M.5    Flynn, R.A.6
  • 31
    • 84859109439 scopus 로고    scopus 로고
    • Pilot and feasibility study: Prospective proteomic profiling of mammary epithelial cells from high-risk women provides evidence of activation of pro-survival pathways
    • Ibarra-Drendall C, Troch MM, Barry WT, Broadwater G, Petricoin EF III, Wulfkuhle J, et al. Pilot and feasibility study: prospective proteomic profiling of mammary epithelial cells from high-risk women provides evidence of activation of pro-survival pathways. Breast Cancer Res Treat 2012;132:487-98.
    • (2012) Breast Cancer Res Treat , vol.132 , pp. 487-498
    • Ibarra-Drendall, C.1    Troch, M.M.2    Barry, W.T.3    Broadwater, G.4    Petricoin III, E.F.5    Wulfkuhle, J.6
  • 33
    • 82355170186 scopus 로고    scopus 로고
    • Solid-phase fractionation strategies applied to proteomics investigations
    • Guerrier L, Fortis F, Boschetti E. Solid-phase fractionation strategies applied to proteomics investigations. Methods Mol Biol 2012;818:11-33.
    • (2012) Methods Mol Biol , vol.818 , pp. 11-33
    • Guerrier, L.1    Fortis, F.2    Boschetti, E.3
  • 34
    • 33845267469 scopus 로고    scopus 로고
    • The blood peptidome: A higher dimension of information content for cancer biomarker discovery
    • DOI 10.1038/nrc2011, PII NRC2011
    • Petricoin EF, Belluco C, Araujo RP, Liotta LA. The blood peptidome: a higher dimension of information content for cancer biomarker discovery. Nat Rev Cancer 2006;6:961-7. (Pubitemid 44862680)
    • (2006) Nature Reviews Cancer , vol.6 , Issue.12 , pp. 961-967
    • Petricoin, E.F.1    Belluco, C.2    Araujo, R.P.3    Liotta, L.A.4
  • 35
    • 79960138430 scopus 로고    scopus 로고
    • Immuno-mass spectrometry: Quantification of low-abundance proteins in biological fluids
    • Kulasingam V, Smith CR, Batruch I, Diamandis EP. Immuno-mass spectrometry: quantification of low-abundance proteins in biological fluids. Methods Mol Biol 2011;728:207-18.
    • (2011) Methods Mol Biol , vol.728 , pp. 207-218
    • Kulasingam, V.1    Smith, C.R.2    Batruch, I.3    Diamandis, E.P.4
  • 37
    • 81855190804 scopus 로고    scopus 로고
    • Multifunctional core-shell nanoparticles: Discovery of previously invisible biomarkers
    • Tamburro D, Fredolini C, Espina V, Douglas TA, Ranganathan A, Ilag L, et al. Multifunctional core-shell nanoparticles: discovery of previously invisible biomarkers. J Am Chem Soc 2011;133:19178-88.
    • (2011) J Am Chem Soc , vol.133 , pp. 19178-19188
    • Tamburro, D.1    Fredolini, C.2    Espina, V.3    Douglas, T.A.4    Ranganathan, A.5    Ilag, L.6
  • 39
    • 78349310118 scopus 로고    scopus 로고
    • Phosphoproteomics in cancer
    • Harsha HC, Pandey A. Phosphoproteomics in cancer. Mol Oncol 2010;4:482-95.
    • (2010) Mol Oncol , vol.4 , pp. 482-495
    • Harsha, H.C.1    Pandey, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.