메뉴 건너뛰기




Volumn 9, Issue , 2012, Pages

Clinical, epidemiological and molecular features of the HIV-1 subtype C and recombinant forms that are circulating in the city of São Paulo, Brazil

Author keywords

Brazil; HIV 1; Recombinants; Resistance; S o Paulo; Subtypes

Indexed keywords

RNA;

EID: 84864708814     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-9-156     Document Type: Article
Times cited : (9)

References (48)
  • 2
    • 38549170656 scopus 로고    scopus 로고
    • Identification of a novel HIV type 1 subtype H/J recombinant in Canada with discordant HIV viral load (RNA) values in three different commercial assays
    • 10.1089/aid.2007.0080 18184071
    • Identification of a novel HIV type 1 subtype H/J recombinant in Canada with discordant HIV viral load (RNA) values in three different commercial assays. Kim JE, Beckthold B, Chen Z, Mihowich J, Malloch L, Gill MJ, AIDS Res Hum Retrovir 2007 23 11 1309 1313 10.1089/aid.2007.0080 18184071
    • (2007) AIDS Res Hum Retrovir , vol.23 , Issue.11 , pp. 1309-1313
    • Kim, J.E.1    Beckthold, B.2    Chen, Z.3    Mihowich, J.4    Malloch, L.5    Gill, M.J.6
  • 3
    • 77957045363 scopus 로고    scopus 로고
    • Genetic diversity among human immunodeficiency virus-1 non-B subtypes in viral load and drug resistance assays
    • 10.1111/j.1469-0691.2010.03300.x 20649800
    • Genetic diversity among human immunodeficiency virus-1 non-B subtypes in viral load and drug resistance assays. Peeters M, Aghokeng AF, Delaporte E, Clin Microbiol Infect 2010 16 1525 1531 10.1111/j.1469-0691.2010.03300.x 20649800
    • (2010) Clin Microbiol Infect , vol.16 , pp. 1525-1531
    • Peeters, M.1    Aghokeng, A.F.2    Delaporte, E.3
  • 4
    • 33646407064 scopus 로고    scopus 로고
    • A diversidade do HIV-1: Uma ferramenta para o estudo da pandemia
    • HIV-1 diversity: a tool for studying the pandemic. Pinto ME, Struchiner CJ, Cad Saúde Pública 2006 22 3 473 484 23016718 (Pubitemid 43677869)
    • (2006) Cadernos de Saude Publica , vol.22 , Issue.3 , pp. 473-484
    • Pinto, M.E.1    Struchiner, C.J.2
  • 5
    • 71049159978 scopus 로고    scopus 로고
    • Differences in resistance mutations among HIV-1 non-subtype B infections: A systematic review of evidence (1996-2008)
    • 10.1186/1758-2652-12-1 19900280
    • Differences in resistance mutations among HIV-1 non-subtype B infections: a systematic review of evidence (1996-2008). Martinez-Cajas JL, Pai NP, Klein MB, Wainberg MA, J Int AIDS Soc 2009 12 1 11 10.1186/1758-2652-12-1 19900280
    • (2009) J Int AIDS Soc , vol.12 , pp. 1-11
    • Martinez-Cajas, J.L.1    Pai, N.P.2    Klein, M.B.3    Wainberg, M.A.4
  • 6
    • 0032519399 scopus 로고    scopus 로고
    • Differences in chemokine coreceptor usage between genetic subtypes of HIV-1
    • DOI 10.1006/viro.1997.8980
    • Differences in chemokine coreceptor usage between genetic subtypes of HIV-1. Tscherning C, Alaeus A, Fredriksson R, Björndal A, Deng H, Littman DR, Fenyö EM, Albert J, Virology 1998 241 181 188 10.1006/viro.1997.8980 9499793 (Pubitemid 28384191)
    • (1998) Virology , vol.241 , Issue.2 , pp. 181-188
    • Tscherning, C.1    Alaeus, A.2    Fredriksson, R.3    Bjorndal, A.4    Deng, H.5    Littman, D.R.6    Fenyo, E.M.7    Albert, J.8
  • 8
    • 60649107795 scopus 로고    scopus 로고
    • High replication fitness and transmission efficiency of HIV-1 subtype C from India: Implications for subtype C predominance
    • 10.1016/j.virol.2008.12.025 19157481
    • High replication fitness and transmission efficiency of HIV-1 subtype C from India: implications for subtype C predominance. Rodriguez MA, Ding M, Ratner D, Chen Y, Tripathy SP, Kulkarni SS, Chatterjee R, Tarwater PM, Gupta P, Virology 2009 385 416 424 10.1016/j.virol.2008.12.025 19157481
    • (2009) Virology , vol.385 , pp. 416-424
    • Rodriguez, M.A.1    Ding, M.2    Ratner, D.3    Chen, Y.4    Tripathy, S.P.5    Kulkarni, S.S.6    Chatterjee, R.7    Tarwater, P.M.8    Gupta, P.9
  • 9
    • 21644472626 scopus 로고    scopus 로고
    • The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates
    • DOI 10.1128/JVI.79.14.8979-8990.2005
    • The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates. Arin KK, Abraha A, Quĩones-Mateu ME, Kestens L, Vanham G, Arts EJ, J Virol 2005 79 14 8979 8990 10.1128/JVI.79.14.8979-8990.2005 15994792 (Pubitemid 40934809)
    • (2005) Journal of Virology , vol.79 , Issue.14 , pp. 8979-8990
    • Arien, K.K.1    Abraha, A.2    Quinones-Mateu, M.E.3    Kestens, L.4    Vanham, G.5    Arts, E.J.6
  • 11
    • 29744448144 scopus 로고    scopus 로고
    • HIV-1 subtypes: Epidemiology and significance for HIV management
    • HIV-1 subtypes: epidemiology and significance for HIV management. Geretti AM, Curr Opin Infect Dis 2006 19 1 1 7 10.1097/01.qco.0000200293.45532.68 16374210 (Pubitemid 43032432)
    • (2006) Current Opinion in Infectious Diseases , vol.19 , Issue.1 , pp. 1-7
    • Geretti, A.M.1
  • 12
    • 79952414942 scopus 로고    scopus 로고
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007
    • 10.1097/QAD.0b013e328342ff93 21297424
    • Global trends in molecular epidemiology of HIV-1 during 2000-2007. Hemelaar J, Gouws E, Ghys PD, Osmanov S, WHO-UNAIDS Network for HIV Isolation and Characterisation, AIDS 2011 25 5 679 689 10.1097/QAD.0b013e328342ff93 21297424
    • (2011) AIDS , vol.25 , Issue.5 , pp. 679-689
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 13
    • 33750253231 scopus 로고    scopus 로고
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
    • DOI 10.1097/01.aids.0000247564.73009.bc, PII 0000203020061024000024
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. Hemelaar J, Gouws E, Ghys PD, Osmanov S, AIDS 2006 20 16 13 W23 10.1097/01.aids.0000247564.73009.bc 17053344 (Pubitemid 44611051)
    • (2006) AIDS , vol.20 , Issue.16
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 14
    • 0033773876 scopus 로고    scopus 로고
    • Understanding the genetic diversity of HIV-1
    • 11086847
    • Understanding the genetic diversity of HIV-1. McCutchan FE, AIDS 2000 14 Suppl 3 31 S44 11086847
    • (2000) AIDS , vol.14 , Issue.SUPPL. 3
    • McCutchan, F.E.1
  • 15
    • 0034469646 scopus 로고    scopus 로고
    • Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B′) recombinant strain in China
    • DOI 10.1128/JVI.74.23.11367-11376.2000
    • Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B) recombinant strain in China. Su L, Graf M, Zhang Y, Briesen HV, Xing H, Kostler J, Melzl H, Wolf H, Shao Y, Wagner R, J Virol 2000 74 23 11367 11376 10.1128/JVI.74.23.11367-11376.2000 11070037 (Pubitemid 32224007)
    • (2000) Journal of Virology , vol.74 , Issue.23 , pp. 11367-11376
    • Su, L.1    Graf, M.2    Zhang, Y.3    Von Briesen, H.4    Xing, H.5    Kostler, J.6    Melzl, H.7    Wolf, H.8    Shao, Y.9    Wagner, R.10
  • 16
    • 33750246313 scopus 로고    scopus 로고
    • Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil
    • DOI 10.1097/01.aids.0000247573.95880.db, PII 0000203020061024000003
    • Characterization of a new circulating recombinant form comprising HIV-1 subtypes C and B in southern Brazil. Santos AF, Sousa TM, Soares EAJM, Sanabani S, Martinez AMB, Sprinz E, Silveira J, Sabino EC, Tanuri A, Soares MA, AIDS 2006 20 16 2011 2019 17053347 (Pubitemid 44611054)
    • (2006) AIDS , vol.20 , Issue.16 , pp. 2011-2019
    • Santos, A.F.1    Sousa, T.M.2    Soares, E.A.J.M.3    Sanabani, S.4    Martinez, A.M.B.5    Sprinz, E.6    Silveira, J.7    Sabino, E.C.8    Tanuri, A.9    Soares, M.A.10
  • 18
    • 1942531897 scopus 로고    scopus 로고
    • Los Alamos National Laboratory web site, http://www.hiv.lanl.gov/content/ sequence/HIV/CRFs/CRFs.html, accessed 25 May 2011
    • The Circulating Recombinant Forms (CRFs) Los Alamos National Laboratory web site, http://www.hiv.lanl.gov/content/sequence/HIV/CRFs/CRFs.html, accessed 25 May 2011
    • The Circulating Recombinant Forms (CRFs)
  • 19
    • 23844557339 scopus 로고    scopus 로고
    • What's new in HIV/AIDS - HIV genetic diversity: Any implications for drug resistance?
    • DOI 10.1007/s15010-005-6405-1
    • Whats new in HIV/AIDS HIV genetic diversity: any implications for drug resistance? Jülg B, Goebel FD, Infection 2005 33 299 301 10.1007/s15010-005-6405-1 16091906 (Pubitemid 41152196)
    • (2005) Infection , vol.33 , Issue.4 , pp. 299-301
    • Julg, B.1    Goebel, F.D.2
  • 20
    • 78951489322 scopus 로고    scopus 로고
    • HIV subtype, epidemiological and mutational correlations in patients from Paraná, Brazil
    • 21221479
    • HIV subtype, epidemiological and mutational correlations in patients from Paraná, Brazil. Silva MM, Telles FQ, da Cunha CA, Rhame FS, Braz J Infect Dis 2010 14 5 495 501 21221479
    • (2010) Braz J Infect Dis , vol.14 , Issue.5 , pp. 495-501
    • Silva, M.M.1    Telles, F.Q.2    Da Cunha, C.A.3    Rhame, F.S.4
  • 21
    • 0037541205 scopus 로고    scopus 로고
    • Brazilian Network for HIV Drug Resistance Surveillance (HIV-BResNet): A survey of chronically infected individuals
    • DOI 10.1097/00002030-200305020-00016
    • Brazilian network for HIV drug resistance surveillance (HIV-BResNet): a survey of chronically infected individuals. Brindeiro RM, Diaz RS, Sabino EC, Morgado MG, Pires IL, Brigido L, Dantas MC, Barreira D, Teixeira PR, Tanuri A, Brazilian Network for Drug Resistance Surveillance, AIDS 2003 17 7 1063 1069 10.1097/00002030-200305020-00016 12700457 (Pubitemid 36549719)
    • (2003) AIDS , vol.17 , Issue.7 , pp. 1063-1069
    • Brindeiro, R.M.1    Diaz, R.S.2    Sabino, E.C.3    Morgado, M.G.4    Pires, I.L.5    Brigido, L.6    Dantas, M.C.7    Barreira, D.8    Teixeira, P.R.9    Tanuri, A.10
  • 22
    • 32344441696 scopus 로고    scopus 로고
    • Low prevalence of primary antiretroviral resistance mutations and predominance of HIV-1 clade C at polymerase gene in newly diagnosed individuals from south Brazil
    • DOI 10.1016/j.virusres.2005.10.004, PII S016817020500300X
    • Low prevalence of primary antiretroviral resistance mutations and predominance of HIV-1 clade C at polymerase gene in newly diagnosed individuals from south Brazil. Rodrigues R, Scherer LC, Oliveira CM, Franco HM, Sperhacke RD, Ferreira JL, Castro SM, Stella IM, Brigido LF, Virus Res 2006 116 1-2 201 207 16332398 (Pubitemid 43221733)
    • (2006) Virus Research , vol.116 , Issue.1-2 , pp. 201-207
    • Rodrigues, R.1    Scherer, L.C.2    Oliveira, C.M.3    Franco, H.M.4    Sperhacke, R.D.5    Paula Ferreira, J.L.6    Castro, S.M.7    Stella, I.M.8    Macedo Brigido, L.F.9
  • 24
    • 0028771725 scopus 로고
    • HIV-1 subtype C in Brazil
    • 7968035
    • HIV-1 subtype C in Brazil. Csillag C, Lancet 1994 344 1354 7968035
    • (1994) Lancet , vol.344 , pp. 1354
    • Csillag, C.1
  • 28
    • 58149119452 scopus 로고    scopus 로고
    • Short communication: Molecular characterization of HIV type 1 BF pol recombinants from São Paulo, Brazil
    • 10.1089/aid.2008.0089 19025398
    • Short communication: molecular characterization of HIV type 1 BF pol recombinants from São Paulo, Brazil. de Souza AC, de Oliveira CM, Rodrigues CL, Silva SA, Levi JE, AIDS Res Hum Retrovir 2008 24 1521 1525 10.1089/aid.2008.0089 19025398
    • (2008) AIDS Res Hum Retrovir , vol.24 , pp. 1521-1525
    • De Souza, A.C.1    De Oliveira, C.M.2    Rodrigues, C.L.3    Silva, S.A.4    Levi, J.E.5
  • 32
    • 84870508209 scopus 로고    scopus 로고
    • HIV Drug Resistance Database web site, (http://www.hivdb.Stanford.edu/ index.html)
    • Stanford University online HIV Drug Resistance Database web site, (http://www.hivdb.Stanford.edu/index.html)
    • Stanford University Online
  • 35
    • 33845943963 scopus 로고    scopus 로고
    • HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance
    • DOI 10.1097/QAD.0b013e328011e691, PII 0000203020070111000012
    • HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance. Shafer RW, Rhee SY, Pillay D, Miller V, Sandstrom P, Schapiro JM, Kuritzkes DR, Bennett D, AIDS 2007 21 2 215 223 10.1097/QAD.0b013e328011e691 17197813 (Pubitemid 46036930)
    • (2007) AIDS , vol.21 , Issue.2 , pp. 215-223
    • Shafer, R.W.1    Rhee, S.-Y.2    Pillay, D.3    Miller, V.4    Sandstrom, P.5    Schapiro, J.M.6    Kuritzkes, D.R.7    Bennett, D.8
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, Nucleic Acids Res 1997 25 24 4876 4882 10.1093/nar/25.24.4876 9396791 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems in the analysis of DNA sequences. American Mathematical Society
    • Some probabilistic and statistical problems in the analysis of DNA sequences. American Mathematical Society. Tavaré S, Lect Math Life Sci 1986 17 57 86
    • (1986) Lect Math Life Sci , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Tamura K, Dudley J, Nei M, Kumar S, Mol Biol Evol 2007 24 1596 1599 10.1093/molbev/msm092 17488738 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: Phylogenetic model averaging
    • DOI 10.1093/molbev/msn083
    • jModelTest: phylogenetic model averaging. Posada D, Mol Biol Evol 2008 25 1253 1256 10.1093/molbev/msn083 18397919 (Pubitemid 351882013)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1253-1256
    • Posada, D.1
  • 40
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • MrBayes 3: Bayesian phylogenetic inference under mixed models. Ronquist F, Huelsenbeck JP, Bioinform Appl Note 2003 19 12 1572 1574 (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 41
    • 68649114426 scopus 로고    scopus 로고
    • Available from: http://www.med.jhu.edu/deptmed/sray/download/
    • Ray S, Simplot v3.5.1 2009 Available from: http://www.med.jhu.edu/ deptmed/sray/download/
    • (2009) Simplot v3.5.1
    • Ray, S.1
  • 42
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Kimura M, J Mol Evol 1980 16 2 111 120 10.1007/BF01731581 7463489 (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 43
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • DOI 10.1093/molbev/msj030
    • Application of phylogenetic networks in evolutionary studies. Huson DH, Bryant D, Mol Biol Evol 2006 23 2 254 267 16221896 (Pubitemid 43100040)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 44
  • 45
    • 79959277685 scopus 로고    scopus 로고
    • Moderate prevalence of transmitted drug resistance and interiorization of HIV type 1 subtype C in the Inland North State of Tocantins, Brazil
    • 10.1089/aid.2010.0156 20860535
    • Moderate prevalence of transmitted drug resistance and interiorization of HIV type 1 subtype C in the Inland North State of Tocantins, Brazil. Carvalho BC, Cardoso LPV, Damasceno S, Stefani MMA, AIDS Res Hum Retrovir 2011 27 1 7 10.1089/aid.2010.0156 20860535
    • (2011) AIDS Res Hum Retrovir , vol.27 , pp. 1-7
    • Carvalho, B.C.1    Cardoso, L.P.V.2    Damasceno, S.3    Stefani, M.M.A.4
  • 46
    • 55949133985 scopus 로고    scopus 로고
    • Genotypic and phenotypic characterization of human immunodeficiency virus type 1 isolates circulating in pregnant women from Mozambique
    • 10.1007/s00705-008-0215-6 18839058
    • Genotypic and phenotypic characterization of human immunodeficiency virus type 1 isolates circulating in pregnant women from Mozambique. Abreu CM, Brindeiro PA, Martins NA, Arruda MB, Bule E, Stakteas S, Tanuri A, Brindeiro RM, Arch Virol 2008 153 11 2013 2017 10.1007/s00705-008-0215-6 18839058
    • (2008) Arch Virol , vol.153 , Issue.11 , pp. 2013-2017
    • Abreu, C.M.1    Brindeiro, P.A.2    Martins, N.A.3    Arruda, M.B.4    Bule, E.5    Stakteas, S.6    Tanuri, A.7    Brindeiro, R.M.8
  • 47
    • 0035984778 scopus 로고    scopus 로고
    • Genetic divergence of human immunodeficiency virus type 1 Ethiopian clade C reverse transcriptase (RT) and rapid development of resistance against nonnucleoside inhibitors of RT
    • DOI 10.1128/AAC.46.7.2087-2094.2002
    • Genetic divergence of human immunodeficiency virus type 1 Ethiopian clade C reverse transcriptase (RT) and rapid development of resistance against non-nucleoside inhibitors of RT. Loemba H, Brenner B, Parniak MA, Maayan S, Spira B, Moisi D, Oliveira M, Detorio M, Wainberg MA, Antimicrob Agents Chemother 2002 46 7 2087 2094 10.1128/AAC.46.7.2087-2094.2002 12069959 (Pubitemid 34665901)
    • (2002) Antimicrobial Agents and Chemotherapy , vol.46 , Issue.7 , pp. 2087-2094
    • Loemba, H.1    Brenner, B.2    Parniak, M.A.3    Ma'ayan, S.4    Spira, B.5    Moisi, D.6    Oliveira, M.7    Detorio, M.8    Wainberg, M.A.9
  • 48
    • 0037415062 scopus 로고    scopus 로고
    • A V106M mutation in HIV-1 clade C viruses exposed to efavirenz confers cross-resistance to non-nucleoside reverse transcriptase inhibitors
    • DOI 10.1097/00002030-200301030-00001
    • A V106M mutation in HIV-1 clade C viruses exposed to efavirens confers cross-resistance to non-nucleoside reverse transcriptase inhibitors. Brenner B, Turner D, Oliveira M, Moisi D, Detorio M, Carobene M, Marlink RG, Schapiro J, Roger M, Wainberg MA, AIDS 2003 17 1 1 F5 10.1097/00002030-200301030-00001 12478089 (Pubitemid 36106291)
    • (2003) AIDS , vol.17 , Issue.1
    • Brenner, B.1    Turner, D.2    Oliveira, M.3    Moisi, D.4    Detorio, M.5    Carobene, M.6    Marlink, R.G.7    Schapiro, J.8    Roger, M.9    Wainberg, M.A.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.