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Volumn 18, Issue 7, 2012, Pages 3267-3282

Pharmacophore modeling, molecular docking, and molecular dynamics simulation approaches for identifying new lead compounds for inhibiting aldose reductase 2

Author keywords

Aldose reductase; Molecular docking; Molecular dynamics simulation; Pharmacophore; Virtual screening

Indexed keywords

ALDEHYDE REDUCTASE; ALDOSE REDUCTASE INHIBITOR; AMINO ACID; GLUCURONATE REDUCTASE; UNCLASSIFIED DRUG;

EID: 84864701871     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-011-1247-5     Document Type: Article
Times cited : (17)

References (41)
  • 2
    • 0025171028 scopus 로고
    • Inhibition of aldehyde reductase by aldose reductase inhibitors
    • Sato S, Kador PF (1990) Inhibition of aldehyde reductase by aldose reductase inhibitors. Biochem Pharmacol 40:1033-1042
    • (1990) Biochem Pharmacol , vol.40 , pp. 1033-1042
    • Sato, S.1    Kador, P.F.2
  • 4
    • 0030751728 scopus 로고    scopus 로고
    • New aldose reductase inhibitors as potential agents for the prevention of long-term diabetic complications
    • Costantino L, Rastelli G, Cignarella G, Vianello P, Barlocco D (1997) New aldose reductase inhibitors as potential agents for the prevention of long-term diabetic complications. Expert Opin Ther Patents 7:843-858
    • (1997) Expert Opin Ther Patents , vol.7 , pp. 843-858
    • Costantino, L.1    Rastelli, G.2    Cignarella, G.3    Vianello, P.4    Barlocco, D.5
  • 5
    • 0034704811 scopus 로고    scopus 로고
    • Molecular modeling of the aldose reductase. Inhibitor complex based on the X-ray crystal structure and studies with single-site-directed mutants
    • Singh SB, Malamas MS, Hohman TC, Nilakantan R, Carper DA, Kitchen D (2000) Molecular modeling of the aldose reductase. inhibitor complex based on the X-ray crystal structure and studies with single-site-directed mutants. J Med Chem 43:1062-1070
    • (2000) J Med Chem , vol.43 , pp. 1062-1070
    • Singh, S.B.1    Malamas, M.S.2    Hohman, T.C.3    Nilakantan, R.4    Carper, D.A.5    Kitchen, D.6
  • 7
    • 2642569349 scopus 로고    scopus 로고
    • Probing flexibility and 'ginduced-fit'h phenomena in aldose reductase by comparative crystal structure analysis and molecular dynamics simulations
    • Sotriffer CA, Kramer O, Klebe G (2004) Probing flexibility and 'ginduced-fit'h phenomena in aldose reductase by comparative crystal structure analysis and molecular dynamics simulations. Proteins Struct Funct Bioinf 56:52-66
    • (2004) Proteins Struct Funct Bioinf , vol.56 , pp. 52-66
    • Sotriffer, C.A.1    Kramer, O.2    Klebe, G.3
  • 8
    • 68249150548 scopus 로고    scopus 로고
    • Charge density and electrostatic interactions of fidarestat, an inhibitor of human aldose reductase
    • doi:10.1021/ja8095015
    • Fournier B, Bendeif EE, Bt G, Podjarny A, Lecomte C, Jelsch C (2009) Charge density and electrostatic interactions of fidarestat, an inhibitor of human aldose reductase. J Am Chem Soc 131:10929-10941. doi:10.1021/ja8095015
    • (2009) J Am Chem Soc , vol.131 , pp. 10929-10941
    • Fournier, B.1    Bendeif, E.E.2    Bt, G.3    Podjarny, A.4    Lecomte, C.5    Jelsch, C.6
  • 9
    • 0347123432 scopus 로고    scopus 로고
    • Positive and negative regulation of glucose uptake by hyperosmotic stress
    • Gual P, Le Marchand-Brustel Y, Tanti JF (2003) Positive and negative regulation of glucose uptake by hyperosmotic stress. Diabetes Metab 29:566-575
    • (2003) Diabetes Metab , vol.29 , pp. 566-575
    • Gual, P.1    Le Marchand-Brustel, Y.2    Tanti, J.F.3
  • 10
    • 0036369809 scopus 로고    scopus 로고
    • Polyol pathway and diabetic peripheral neuropathy
    • Oates PJ (2002) Polyol pathway and diabetic peripheral neuropathy. Int Rev Neurobiol 50:325-328
    • (2002) Int Rev Neurobiol , vol.50 , pp. 325-328
    • Oates, P.J.1
  • 12
    • 62149150950 scopus 로고    scopus 로고
    • Discovery of [3-(4, 5, 7-trifluoro-benzothiazol-2-ylmethyl)-pyrrolo[2, 3-b]pyridin-1-yl]acetic acids as highly potent and selective inhibitors of aldose reductase for treatment of chronic diabetic complications
    • Mc VZ, Doan B, Dr S, Sredy J, Podjarny AD (2009) Discovery of [3-(4, 5, 7-trifluoro-benzothiazol-2-ylmethyl)-pyrrolo[2, 3-b]pyridin-1-yl]acetic acids as highly potent and selective inhibitors of aldose reductase for treatment of chronic diabetic complications. Bioorg Med Chem Lett 7:2006-2008
    • (2009) Bioorg Med Chem Lett , vol.7 , pp. 2006-2008
    • Mc, V.Z.1    Doan, B.2    Dr, S.3    Sredy, J.4    Podjarny, A.D.5
  • 15
    • 0032578366 scopus 로고    scopus 로고
    • Structural features of the aldose reductase and aldehyde reductase inhibitorbinding sites
    • El-Kabbani O, Dk W, Petrash M, Quiocho FA (1998) Structural features of the aldose reductase and aldehyde reductase inhibitorbinding sites. Mol Vision 4:19-25
    • (1998) Mol Vision , vol.4 , pp. 19-25
    • El-Kabbani, O.1    Dk, W.2    Petrash, M.3    Quiocho, F.A.4
  • 16
    • 0033920645 scopus 로고    scopus 로고
    • A potent aldose reductase inhibitor, (2S, 4S)-6-fluoro-2', 5'-dioxospiro[chroman-4, 4'-imidazolidine]-2-carboxamide (fidarestat): Its absolute configuration and interactions with the aldose reductase by X-ray crystallography
    • Oka M, Matsumoto Y, Sugiyama S, Tsuruta N, Matsushima M (2000) A potent aldose reductase inhibitor, (2S, 4S)-6-fluoro-2', 5'-dioxospiro[chroman-4, 4'-imidazolidine]-2-carboxamide (fidarestat): its absolute configuration and interactions with the aldose reductase by X-ray crystallography. J Med Chem 43:2479-2483
    • (2000) J Med Chem , vol.43 , pp. 2479-2483
    • Oka, M.1    Matsumoto, Y.2    Sugiyama, S.3    Tsuruta, N.4    Matsushima, M.5
  • 17
    • 30344476404 scopus 로고    scopus 로고
    • High-resolution crystal structure of aldose reductase complexed with the novel sulfonyl-pyridazinone inhibitor exhibiting an alternative active site anchoring group
    • Steuber H, Zentgraf M, Podjarny A, Heine A, Klebe G (2006) High-resolution crystal structure of aldose reductase complexed with the novel sulfonyl-pyridazinone inhibitor exhibiting an alternative active site anchoring group. J Mol Biol 356:45-56
    • (2006) J Mol Biol , vol.356 , pp. 45-56
    • Steuber, H.1    Zentgraf, M.2    Podjarny, A.3    Heine, A.4    Klebe, G.5
  • 18
    • 70749089191 scopus 로고    scopus 로고
    • Aldose reductase: A novel therapeutic target for inflammatory pathologies
    • Ramana KV, Srivastava SK (2010) Aldose reductase: a novel therapeutic target for inflammatory pathologies. Int J Biochem Cell Biol 42:17-20
    • (2010) Int J Biochem Cell Biol , vol.42 , pp. 17-20
    • Ramana, K.V.1    Srivastava, S.K.2
  • 19
    • 2442516583 scopus 로고    scopus 로고
    • Molecular modeling and structure-based drug discovery studies of aldose reductase inhibitors
    • Miyamoto S (2002) Molecular modeling and structure-based drug discovery studies of aldose reductase inhibitors. Chem-Bio Inf J 2:74-85
    • (2002) Chem-Bio Inf J , vol.2 , pp. 74-85
    • Miyamoto, S.1
  • 20
    • 84864673857 scopus 로고    scopus 로고
    • Accelrys Software, Inc. (2011) Corporate homepage. http://www.accelrys. com
    • (2011) Corporate Homepage
  • 21
    • 0025967888 scopus 로고
    • Novel, potent aldose reductase inhibitors: 3, 4-dihydro-4-oxo-3-[[5- (trifluoromethyl)-2-benzothiazolyl]methyl]-1-phthalazineacetic acid (zopolrestat) and congeners
    • Mylari BL, Larson ER, Beyer TA, Zembrowski WJ, Aldinger CE, Dee MF, Siegel TW, Singleton DH (1991) Novel, potent aldose reductase inhibitors: 3, 4-dihydro-4-oxo-3-[[5-(trifluoromethyl)-2-benzothiazolyl]methyl] -1-phthalazineacetic acid (zopolrestat) and congeners. J Med Chem 34:108-122
    • (1991) J Med Chem , vol.34 , pp. 108-122
    • Mylari, B.L.1    Larson, E.R.2    Beyer, T.A.3    Zembrowski, W.J.4    Aldinger, C.E.5    Dee, M.F.6    Siegel, T.W.7    Singleton, D.H.8
  • 22
    • 0026654543 scopus 로고
    • Orally active aldose reductase inhibitors: Indazoleacetic, oxopyridazineacetic, and oxopyridopyridazineacetic acid derivatives
    • Mylari BL, Zembrowski WJ, Beyer TA, Aldinger CE, Siegel TW (1992) Orally active aldose reductase inhibitors: indazoleacetic, oxopyridazineacetic, and oxopyridopyridazineacetic acid derivatives. J Med Chem 35:2155-2162
    • (1992) J Med Chem , vol.35 , pp. 2155-2162
    • Mylari, B.L.1    Zembrowski, W.J.2    Beyer, T.A.3    Aldinger, C.E.4    Siegel, T.W.5
  • 24
    • 79957913924 scopus 로고    scopus 로고
    • Advanced Chemistry Development, Inc. (2010) Homepage. http://www.acdlabs.com
    • (2010) Homepage
  • 28
    • 84986522856 scopus 로고
    • Poling: Promoting conformational variation
    • Smellie A, Teig SL, Towbin P (1995) Poling: promoting conformational variation. J Comput Chem 16:171-187
    • (1995) J Comput Chem , vol.16 , pp. 171-187
    • Smellie, A.1    Teig, S.L.2    Towbin, P.3
  • 29
    • 79957500053 scopus 로고    scopus 로고
    • Pharmacophore based virtual screening, molecular docking studies to design potent heat shock protein 90 inhibitors
    • Sakkiah S, Thangapandian S, John S, Lee KW (2011) Pharmacophore based virtual screening, molecular docking studies to design potent heat shock protein 90 inhibitors. Eur J Med Chem 46:2937-2947
    • (2011) Eur J Med Chem , vol.46 , pp. 2937-2947
    • Sakkiah, S.1    Thangapandian, S.2    John, S.3    Lee, K.W.4
  • 30
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46:3-26
    • (2001) Adv Drug Deliv Rev , vol.46 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 31
    • 77950858513 scopus 로고    scopus 로고
    • 3D QSAR pharmacophore based virtual screening and molecular docking for identification of potential HSP90 inhibitors
    • Sakkiah S, Thangapandian S, John S, Kwon YJ, Lee KW (2010) 3D QSAR pharmacophore based virtual screening and molecular docking for identification of potential HSP90 inhibitors. Eur J Med Chem 45:2132-2140
    • (2010) Eur J Med Chem , vol.45 , pp. 2132-2140
    • Sakkiah, S.1    Thangapandian, S.2    John, S.3    Kwon, Y.J.4    Lee, K.W.5
  • 32
    • 37549024654 scopus 로고    scopus 로고
    • The Protein Data Bank: A historical perspective
    • Berman HM (2008) The Protein Data Bank: a historical perspective. Acta Crystallogr A 64:88-95
    • (2008) Acta Crystallogr A , vol.64 , pp. 88-95
    • Berman, H.M.1
  • 33
    • 0037263758 scopus 로고    scopus 로고
    • The protein data bank
    • The PDB Team
    • The PDB Team (2003) The Protein Data Bank. Methods Biochem Anal 44:181-198
    • (2003) Methods Biochem Anal , vol.44 , pp. 181-198
  • 36
    • 7544226311 scopus 로고    scopus 로고
    • PRODRG: A tool for high-throughput crystallography of protein-ligand complexes
    • Schuttelkopf AW, van Aalten DMF (2004) PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr D 60:1355-1363
    • (2004) Acta Crystallogr D , vol.60 , pp. 1355-1363
    • Schuttelkopf, A.W.1    Van Aalten, D.M.F.2
  • 37
    • 0030158429 scopus 로고    scopus 로고
    • PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
    • Aalten DMF, Bywater R, Findlay JBC, Hendlich M, Hooft RWW, Vriend G (1996) PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules. J Comput Aided Mol Des 10:255-262
    • (1996) J Comput Aided Mol Des , vol.10 , pp. 255-262
    • Aalten, D.M.F.1    Bywater, R.2    Findlay, J.B.C.3    Hendlich, M.4    Hooft, R.W.W.5    Vriend, G.6
  • 38
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23:327-341
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 39
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N. log (N) method for Ewald sums in large systems
    • Darden T, York D, Pedersen L (1993) Particle mesh Ewald: an N. log (N) method for Ewald sums in large systems. J Chem Phys 98:10089-10092
    • (1993) J Chem Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 40
    • 0000388705 scopus 로고    scopus 로고
    • LINCS: A linear constraint solver for molecular simulations
    • Hess B, Bekker H, Berendsen H, Fraaije J (1997) LINCS: A linear constraint solver for molecular simulations. J Comput Chem 18:1463-1472
    • (1997) J Comput Chem , vol.18 , pp. 1463-1472
    • Hess, B.1    Bekker, H.2    Berendsen, H.3    Fraaije, J.4
  • 41
    • 0037212102 scopus 로고    scopus 로고
    • LigandFit: A novel method for the shape-directed rapid docking of ligands to protein active sites
    • Venkatachalam CM, Jiang X, Oldfield T, Waldman M (2003) LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites. J Mol Graph Model 21:289-307
    • (2003) J Mol Graph Model , vol.21 , pp. 289-307
    • Venkatachalam, C.M.1    Jiang, X.2    Oldfield, T.3    Waldman, M.4


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