-
1
-
-
0036369809
-
Polyol pathway and diabetic peripheral neuropathy
-
Oates PJ. Polyol pathway and diabetic peripheral neuropathy. Int Rev Neurobiol 2002;50:325-392.
-
(2002)
Int Rev Neurobiol
, vol.50
, pp. 325-392
-
-
Oates, P.J.1
-
2
-
-
0031920049
-
Aldose reductase in glucose toxicity: A potential target for the prevention of diabetic complications
-
Yabe-Nishimura C. Aldose reductase in glucose toxicity: a potential target for the prevention of diabetic complications. Pharmacol Rev 1998;50:21-33.
-
(1998)
Pharmacol Rev
, vol.50
, pp. 21-33
-
-
Yabe-Nishimura, C.1
-
3
-
-
0036113742
-
Recent advances in aldose reductase inhibitors: Potential agents for the treatment of diabetic complications
-
Miyamoto S. Recent advances in aldose reductase inhibitors: potential agents for the treatment of diabetic complications. Expert Opin Ther Patents 2002;12:621-631.
-
(2002)
Expert Opin Ther Patents
, vol.12
, pp. 621-631
-
-
Miyamoto, S.1
-
4
-
-
0033915678
-
Recent developments in structure-based drug design
-
Klebe G. Recent developments in structure-based drug design. J Mol Med 2000;78:269-281.
-
(2000)
J Mol Med
, vol.78
, pp. 269-281
-
-
Klebe, G.1
-
5
-
-
0035942512
-
Discovery of novel aldose reductase inhibitors using a protein structure-based approach: 3D-database search followed by design and synthesis
-
Iwata Y, Arisawa M, Hamada R, Kita Y, Mizutani MY, Tomioka N, Itai A, Miyamoto S. Discovery of novel aldose reductase inhibitors using a protein structure-based approach: 3D-database search followed by design and synthesis. J Med Chem 2001;44:1718-1728.
-
(2001)
J Med Chem
, vol.44
, pp. 1718-1728
-
-
Iwata, Y.1
Arisawa, M.2
Hamada, R.3
Kita, Y.4
Mizutani, M.Y.5
Tomioka, N.6
Itai, A.7
Miyamoto, S.8
-
6
-
-
0036191826
-
Discovery of new inhibitors of aldose reductase from molecular docking and database screening
-
Rastelli G, Ferrari AM, Costantino L, Gamberini MC. Discovery of new inhibitors of aldose reductase from molecular docking and database screening. Bioorg Med Chem 2002;10:1437-1450.
-
(2002)
Bioorg Med Chem
, vol.10
, pp. 1437-1450
-
-
Rastelli, G.1
Ferrari, A.M.2
Costantino, L.3
Gamberini, M.C.4
-
8
-
-
0036680063
-
Protein flexibility and drug design: How to hit a moving target
-
Carlson HA. Protein flexibility and drug design: how to hit a moving target. Curr Opin Chem Biol 2002;6:447-452.
-
(2002)
Curr Opin Chem Biol
, vol.6
, pp. 447-452
-
-
Carlson, H.A.1
-
9
-
-
0033974667
-
Accommodating protein flexibility in computational drug design
-
Carlson HA, McCammon JA. Accommodating protein flexibility in computational drug design. Mol Pharmacol 2000;57:213-218.
-
(2000)
Mol Pharmacol
, vol.57
, pp. 213-218
-
-
Carlson, H.A.1
McCammon, J.A.2
-
10
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
Halperin I, Ma B, Wolfson H, Nussinov R. Principles of docking: an overview of search algorithms and a guide to scoring functions. Proteins 2002;47:409-443.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
11
-
-
0001731266
-
Use of Relibase for retrieving complex three-dimensional interaction patterns including crystallographic packing effects
-
Bergner A, Günther J, Hendlich M, Klebe G, Verdonk M. Use of Relibase for retrieving complex three-dimensional interaction patterns including crystallographic packing effects. Biopolymers 2001;61:99-110.
-
(2001)
Biopolymers
, vol.61
, pp. 99-110
-
-
Bergner, A.1
Günther, J.2
Hendlich, M.3
Klebe, G.4
Verdonk, M.5
-
12
-
-
0037436333
-
Utilising structural knowledge in drug design strategies: Applications using Relibase+
-
Günther J, Bergner A, Hendlich M, Klebe G. Utilising structural knowledge in drug design strategies: applications using Relibase+. J Mol Biol 2003;326:621-636.
-
(2003)
J Mol Biol
, vol.326
, pp. 621-636
-
-
Günther, J.1
Bergner, A.2
Hendlich, M.3
Klebe, G.4
-
13
-
-
0037436339
-
Relibase: Design and development of a database for comprehensive analysis of protein-ligand interactions
-
Hendlich M, Bergner A, Günther J, Klebe G. Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. J Mol Biol 2003;326:607-620.
-
(2003)
J Mol Biol
, vol.326
, pp. 607-620
-
-
Hendlich, M.1
Bergner, A.2
Günther, J.3
Klebe, G.4
-
14
-
-
0029911124
-
Synthesis, activity, and molecular modeling of a new series of tricyclic pyridazinones as selective aldose reductase inhibitors
-
Costantino L, Rastelli G, Vescovini K, Cignarella G, Vianello P, Del Corso A, Cappiello M, Mura U, Barlocco D. Synthesis, activity, and molecular modeling of a new series of tricyclic pyridazinones as selective aldose reductase inhibitors. J Med Chem 1996;39: 4936-4405.
-
(1996)
J Med Chem
, vol.39
, pp. 4936-4405
-
-
Costantino, L.1
Rastelli, G.2
Vescovini, K.3
Cignarella, G.4
Vianello, P.5
Del Corso, A.6
Cappiello, M.7
Mura, U.8
Barlocco, D.9
-
15
-
-
0032539837
-
Molecular dynamics simulations of the structure of aldose reductase complexed with the inhibitor tolrestat
-
Rastelli G, Costantino L. Molecular dynamics simulations of the structure of aldose reductase complexed with the inhibitor tolrestat. Bioorg Med Chem Lett 1998;8:641-646.
-
(1998)
Bioorg Med Chem Lett
, vol.8
, pp. 641-646
-
-
Rastelli, G.1
Costantino, L.2
-
16
-
-
0037325805
-
Hydrogen-bonding interactions between aldose reductase complexed with NADP(H) and inhibitor tolrestat studied by molecular dynamics simulations and binding assay
-
Lee YS, Hodoscek M, Kador PF, Sugiyama K. Hydrogen-bonding interactions between aldose reductase complexed with NADP(H) and inhibitor tolrestat studied by molecular dynamics simulations and binding assay. Chem Biol Interact 2003;143-144:307-316.
-
(2003)
Chem Biol Interact
, vol.143-144
, pp. 307-316
-
-
Lee, Y.S.1
Hodoscek, M.2
Kador, P.F.3
Sugiyama, K.4
-
17
-
-
0036285985
-
Molecular dynamics simulations of biomolecules
-
Karplus M. Molecular dynamics simulations of biomolecules (Editorial). Acc Chem Res 2002;35:321-323.
-
(2002)
Acc Chem Res
, vol.35
, pp. 321-323
-
-
Karplus, M.1
-
19
-
-
2442562782
-
Design and synthesis of novel inhibitors of aldose reductase for the treatment of diabetic complications
-
New Orleans
-
Van Zandt M, Sibley EO, Combs KJ, McCann EE, Flam B, Lavoie DJ, Sawicki D, Sabetta A, Carrington A, Sredy J, Calderone V, Cuevrier B, Podjarny AD. Design and synthesis of novel inhibitors of aldose reductase for the treatment of diabetic complications; 218th ACS National Meeting, 1999, New Orleans.
-
(1999)
218th ACS National Meeting
-
-
Van Zandt, M.1
Sibley, E.O.2
Combs, K.J.3
McCann, E.E.4
Flam, B.5
Lavoie, D.J.6
Sawicki, D.7
Sabetta, A.8
Carrington, A.9
Sredy, J.10
Calderone, V.11
Cuevrier, B.12
Podjarny, A.D.13
-
20
-
-
2542617999
-
Human aldose reductase-inhibitor complex at 0.66 Å: Experimentally observed protonation states and atomic interactions have implications for the inhibition mechanism
-
Accepted for publication
-
Howard E, Sanishvili R, Cachau RE, Mitschler A, Chevrier B, Barth P, Lamour V, Van Zandt M, Sibley E, Moras D, Schneider TR, Joachimiak A, Podjarny AD. Human aldose reductase- inhibitor complex at 0.66 Å: experimentally observed protonation states and atomic interactions have implications for the inhibition mechanism. Proteins; Accepted for publication.
-
Proteins
-
-
Howard, E.1
Sanishvili, R.2
Cachau, R.E.3
Mitschler, A.4
Chevrier, B.5
Barth, P.6
Lamour, V.7
Van Zandt, M.8
Sibley, E.9
Moras, D.10
Schneider, T.R.11
Joachimiak, A.12
Podjarny, A.D.13
-
21
-
-
0004268506
-
-
San Francisco: University of California
-
Case DA, Pearlman DA, Caldwell JW, Cheatham TE III, Ross WS, Simmerling CL, Darden TA, Merz KM, Stanton RV, Cheng AL, Vincent JJ, Crowley M, Tsui V, Radmer RJ, Duan Y, Pitera J, Massova I, Seibel GL, Singh UC, Weiner PK, Kollman PA. AMBER 6. San Francisco: University of California; 1999.
-
(1999)
AMBER 6
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.L.10
Vincent, J.J.11
Crowley, M.12
Tsui, V.13
Radmer, R.J.14
Duan, Y.15
Pitera, J.16
Massova, I.17
Seibel, G.L.18
Singh, U.C.19
Weiner, P.K.20
Kollman, P.A.21
more..
-
22
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Jr., Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 1995;117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr., K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
23
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang J, Cieplak P, Kollman PA. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J Comput Chem 2000;21:1049-1074.
-
(2000)
J Comput Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
24
-
-
0004133516
-
-
Pittsburgh, PA: Gaussian, Inc.
-
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Zakrzewski VG, Montgomery JA, Stratmann RE, Burant JC, Dapprich S, Millam JM, Daniels AD, Kudin KN, Strain MC, Farkas O, Tomasi J, Barone V, Cossi M, Cammi R, Mennucci B, Pomelli C, Adamo C, Clifford S, Ochterski J, Petersson GA, Ayala PY, Cui Q, Morokuma K, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Cioslowski J, Ortiz JV, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Gomperts R, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Gonzalez C, Challacombe M, Gill PMW, Johnson BG, Chen W, Wong MW, Andres JL, Head-Gordon M, Replogle ES, Pople JA. Gaussian98. Pittsburgh, PA: Gaussian, Inc.; 1998.
-
(1998)
Gaussian98
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
25
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
-
Bayly CI, Cieplak P, Cornell WP, Kollman PA. A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model. J Phys Chem 1993;97: 10269-10280.
-
(1993)
J Phys Chem
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.P.3
Kollman, P.A.4
-
26
-
-
0000667030
-
Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation
-
Cornell WP, Cieplak P, Bayly CI, Kollman PA. Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation. J Am Chem Soc 1993;115:9620-9631.
-
(1993)
J Am Chem Soc
, vol.115
, pp. 9620-9631
-
-
Cornell, W.P.1
Cieplak, P.2
Bayly, C.I.3
Kollman, P.A.4
-
27
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, Chandrasekhar J, Madura JP, Impey RW, Klein ML. Comparison of simple potential functions for simulating liquid water. J Chem Phys 1983;79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.P.3
Impey, R.W.4
Klein, M.L.5
-
28
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Di Nola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Di Nola, A.4
Haak, J.R.5
-
29
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
30
-
-
33846823909
-
Particle Mesh Ewald - An N. log(N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L. Particle Mesh Ewald-an N.log(N) method for Ewald sums in large systems. J Chem Phys 1993;98: 10089-10092.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
31
-
-
0004195760
-
-
San Francisco: University of California
-
Case DA, Pearlman DA, Caldwell JW, Cheatham TE III, Wang J, Ross WS, Simmerling CL, Darden TA, Merz KM, Stanton RV, Cheng AL, Vincent JJ, Crowley M, Tsui V, Gohlke H, Radmer RJ, Duan Y, Pitera J, Massova I, Seibel GL, Singh UC, Weiner PK, Kollman PA. AMBER 7. San Francisco: University of California; 2002.
-
(2002)
AMBER 7
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Wang, J.5
Ross, W.S.6
Simmerling, C.L.7
Darden, T.A.8
Merz, K.M.9
Stanton, R.V.10
Cheng, A.L.11
Vincent, J.J.12
Crowley, M.13
Tsui, V.14
Gohlke, H.15
Radmer, R.J.16
Duan, Y.17
Pitera, J.18
Massova, I.19
Seibel, G.L.20
Singh, U.C.21
Weiner, P.K.22
Kollman, P.A.23
more..
-
34
-
-
0031570301
-
A "specificity" pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil
-
Urzhumtsev A, Tete-Favier F, Mitschler A, Barbanton J, Barth P, Urzhumtseva L, Biellmann JF, Podjarny A, Moras D. A "specificity" pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil. Structure 1997;5:601-612.
-
(1997)
Structure
, vol.5
, pp. 601-612
-
-
Urzhumtsev, A.1
Tete-Favier, F.2
Mitschler, A.3
Barbanton, J.4
Barth, P.5
Urzhumtseva, L.6
Biellmann, J.F.7
Podjarny, A.8
Moras, D.9
-
35
-
-
0033642945
-
Structural stability of binding sites: Consequences for binding affinity and allosteric effects
-
Luque I, Freire E. Structural stability of binding sites: consequences for binding affinity and allosteric effects. Proteins Suppl 2000;4:63-71.
-
(2000)
Proteins Suppl
, vol.4
, pp. 63-71
-
-
Luque, I.1
Freire, E.2
-
36
-
-
0031746754
-
Statistical thermodynamic linkage between conformational and binding equilibria
-
Freire E. Statistical thermodynamic linkage between conformational and binding equilibria. Adv Protein Chem 1998;51:255-279.
-
(1998)
Adv Protein Chem
, vol.51
, pp. 255-279
-
-
Freire, E.1
-
38
-
-
0035957528
-
FlexE: Efficient molecular docking considering protein structure variations
-
Claussen H, Buning C, Rarey M, Lengauer T. FlexE: efficient molecular docking considering protein structure variations. J Mol Biol 2001;308:377-395.
-
(2001)
J Mol Biol
, vol.308
, pp. 377-395
-
-
Claussen, H.1
Buning, C.2
Rarey, M.3
Lengauer, T.4
|