Halioglobus japonicus gen. nov., sp. nov. and halioglobus pacificus sp. nov., members of the class gammaproteobacteria isolated from seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 8, 2012, Pages 1784-1789

  Park, Sanghwa ^a   Yoshizawa, Susumu ^a   Inomata, Kentaro ^a   Kogure, Kazuhiro ^a   Yokota, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; ESTERASE; FATTY ACID; GENOMIC DNA; NITRATE; NITROGEN; QUINONE DERIVATIVE; RIBOSOME RNA; RNA 16S; SEA WATER; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GENUS; HALIOGLOBUS JAPONICUS; HALIOGLOBUS PACIFICUS; JAPAN; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PHENOTYPE; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; HETEROTROPHIC PROCESSES; JAPAN; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; WATER MICROBIOLOGY;

COCCOIDEA; GAMMAPROTEOBACTERIA; NEGIBACTERIA;

EID: 84864697570     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.031443-0     Document Type: Article

References (29)

1. Dittmer, J. C. & Lester, R. L. (1964). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 15, 126-127.
2. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Graeber, I., Kaesler, I., Borchert, M. S., Dieckmann, R., Pape, T., Lurz, R., Nielsen, P., von Döhren, H., Michaelis, W. & Szewzyk, U. (2008). Spongiibacter marinus gen. nov., sp. nov., a halophilic marine bacterium isolated from the boreal sponge Haliclona sp. 1. Int J Syst Evol Microbiol 58, 585-590.
5. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
6. Hwang, C. Y. & Cho, B. C. (2009). Spongiibacter tropicus sp. nov., isolated from a Synechococcus culture. Int J Syst Evol Microbiol 59, 2176-2179.
7. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
8. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
9. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-147. Edited by E. Stackebrandt & M. Goodfellow. New York: John Wiley and Sons.
10. Lee, Y. K., Hong, S. G., Cho, H. H., Cho, K. H. & Lee, H. K. (2007). Dasania marina gen. nov., sp. nov., of the order Pseudomonadales, isolated from Arctic marine sediment. J Microbiol 45, 505-509.
11. Li, H., Zhang, S., Chen, C., Zhang, Y., Gao, Z., Yu, Y., Chen, X., Chen, B. & Zhang, Y. (2011). Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., new members of the Gammaproteobacteria isolated from coastal attached (fast) ice and surface seawater of the Antarctic, respectively. Int J Syst Evol Microbiol 61, 2052-2057.
12. Lucena, T., Pascual, J., Garay, E., Arahal, D. R., Macián, M. C. & Pujalte, M. J. (2010). Haliea mediterranea sp. nov., a marine gammaproteobacterium. Int J Syst Evol Microbiol 60, 1844-1848.
13. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
16. Murray, R. G. E., Doetsch, R. N. & Robinow, F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Park, S., Yoshizawa, S., Kogure, K. & Yokota, A. (2011). Oceanicoccus sagamiensis gen. nov., sp. nov., a gammaproteobacterium isolated from sea water of Sagami Bay in Japan. J Microbiol 49, 233-237.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
20. Spring, S., Lünsdorf, H., Fuchs, B. M. & Tindall, B. J. (2009). The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov. PLoS ONE 4, e4866.
21. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Urios, L., Agogué, H., Intertaglia, L., Lesongeur, F. & Lebaron, P. (2008a). Melitea salexigens gen. nov., sp. nov., a gammaproteobacterium from the Mediterranean Sea. Int J Syst Evol Microbiol 58, 2479-2483.
24. Urios, L., Intertaglia, L., Lesongeur, F. & Lebaron, P. (2008b). Haliea salexigens gen. nov., sp. nov., a member of the Gammaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol 58, 1233-1237.
25. Urios, L., Intertaglia, L., Lesongeur, F. & Lebaron, P. (2009). Haliea rubra sp. nov., a member of the Gammaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol 59, 1188-1192.
26. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
27. Worliczek, H. L., Kämpfer, P., Rosengarten, R., Tindall, B. J. & Busse, H. J. (2007). Polar lipid and fatty acid profiles - re-vitalizing old approaches as a modern tool for the classification of mycoplasmas? Syst Appl Microbiol 30, 355-370.
28. Xie, C. H. & Yokota, A. (2003). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
29. Yan, S., Fuchs, B. M., Lenk, S., Harder, J., Wulf, J., Jiao, N.-Z. & Amann, R. (2009). Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria. Syst Appl Microbiol 32, 124-139.