Identification of mitochondrial thiamin diphosphate carriers from Arabidopsis and maize

Functional and Integrative Genomics

Volumn 12, Issue 2, 2012, Pages 317-326

  Frelin, Océane ^a   Agrimi, Gennaro ^b   Laera, Valentina L ^b   Castegna, Alessandra ^b   Richardson, Lynn G L ^c   Mullen, Robert T ^c   Lerma Ortiz, Claudia ^a   Palmieri, Ferdinando ^b   Hanson, Andrew D ^a  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF BARI   (Italy)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

Functional complementation; Membrane transport; Mitochondria; Thiamin diphosphate carrier; Vitamin B1

Indexed keywords

ACETOLACTATE SYNTHASE; COCARBOXYLASE;

ARABIDOPSIS; ARTICLE; CARBON SOURCE; CELLULAR DISTRIBUTION; CHLOROPLAST; CONTROLLED STUDY; ENZYME ACTIVITY; GENE EXPRESSION; GENOME ANALYSIS; GRMZM2G118515 GENE; GRMZM2G124911 GENE; MAIZE; MITOCHONDRION; NONHUMAN; PLANT GENE; PRIORITY JOURNAL; PROTEIN EXPRESSION;

ACETOLACTATE SYNTHASE; ARABIDOPSIS; CELL LINE; GENETIC COMPLEMENTATION TEST; MITOCHONDRIA; MITOCHONDRIAL MEMBRANE TRANSPORT PROTEINS; PHYLOGENY; PLANT PROTEINS; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; THIAMINE MONOPHOSPHATE; THIAMINE PYROPHOSPHATE; ZEA MAYS;

ANIMALIA; ARABIDOPSIS; MAGNOLIOPHYTA; NICOTIANA TABACUM; PISUM SATIVUM; SACCHAROMYCES CEREVISIAE; ZEA MAYS;

EID: 84864668636     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-012-0273-4     Document Type: Article

References (54)

1. Agrimi G, Russo A, Scarcia P, Palmieri F (2011) The human gene SLC25A17 encodes a peroxisomal transporter of coenzyme A, FAD and NAD+. Biochem J. doi:10.1042/BJ20111420
2. Ajjawi I, Rodriguez Milla MA, Cushman J, Shintani DK (2007a) Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis. Plant Mol Biol 65:151-162
3. Ajjawi I, Tsegaye Y, Shintani D (2007b) Determination of the genetic, molecular, and biochemical basis of the Arabidopsis thaliana thiamin auxotroph th1. Arch Biochem Biophys 459:107-114 (Pubitemid 46282598)
4. Araújo WL, Nunes-Nesi A, Trenkamp S, Bunik VI, Fernie AR (2008) Inhibition of 2-oxoglutarate dehydrogenase in potato tuber suggests the enzyme is limiting for respiration and confirms its importance in nitrogen assimilation. Plant Physiol 148:1782-1796 (Pubitemid 352847455)
5. Barile M, Passarella S, Quagliariello E (1990) Thiamine pyrophosphate uptake into isolated rat liver mitochondria. Arch Biochem Biophys 280:352-357 (Pubitemid 20221975)
6. Bedhomme M, Hoffmann M, McCarthy EA, Gambonnet B, Moran RG, Rébeillé F, Ravanel S (2005) Folate metabolism in plants: an Arabidopsis homolog of the mammalian mitochondrial folate transporter mediates folate import into chloroplasts. J Biol Chem 280:34823-34831 (Pubitemid 41504616)
7. Belanger FC, Leustek T, Chu B, Kriz AL (1995) Evidence for the thiamine biosynthetic pathway in higher-plant plastids and its developmental regulation. Plant Mol Biol 29:809-821 (Pubitemid 3012904)
8. Bernhardt K, Wilkinson S, Weber AP, Linka N (2012) A peroxisomal carrier delivers NAD+ and contributes to optimal fatty acid degradation during storage oil mobilization. Plant J 69:1-13
9. Blanc G, Hokamp K, Wolfe KH (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 13:137-144 (Pubitemid 36575763)
10. Blanc G, Wolfe KH (2004) Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16:1679-1691 (Pubitemid 38908768)
11. Block G, Dresser CM, Hartman AM, Carroll MD (1985) Nutrient sources in the American diet: quantitative data from the NHANES II survey: I. Vitamins and minerals Am J Epidemiol 122:13-26 (Pubitemid 15010432)
12. Brandizzi F, Irons S, Kearns A, Hawes C (2003) BY-2 cells: culture and transformation for live cell imaging. Curr Protoc Cell Biol 1.7.1-1.7.16
13. Clark SM, Di Leo R, Dhanoa PK, Van Cauwenberghe OR, Mullen RT, Shelp BJ (2009) Biochemical characterization, mitochondrial localization, expression, and potential functions for an Arabidopsis gamma-Aminobutyrate transaminase that utilizes both pyruvate and glyoxylate. J Exp Bot 60:1743-1757
14. Cline K (1986) Import of proteins into chloroplasts. Membrane integration of a thylakoid precursor protein reconstituted in chloroplast lysates. J Biol Chem 261:14804-14810 (Pubitemid 17220280)
15. Daum G, Gasser SM, Schatz G (1982) Import of proteins into mitochondria. Energy-dependent, two-step processing of the intermembrane space enzyme cytochrome b2 by isolated yeast mitochondria. J Biol Chem 257:13075-13080
16. Deus B, Blum H (1970) Subcellular distribution of thiamine pyrophosphokinase activity in rat liver and erythrocytes. Biochim Biophys Acta 219:489-492
17. Douce R, Bourguignon J, Brouquisse R, Neuburger M (1987) Isolation of plant mitochondria: general principles and criteria of integrity. Methods Enzymol 148:403-415
18. Foulon V, Antonenkov VD, Croes K, Waelkens E, Mannaerts GP, Van Veldhoven PP, Casteels M (1999) Purification, molecular cloning, and expression of 2-hydroxyphytanoyl-CoA lyase, a peroxisomal thiamine pyrophosphate-dependent enzyme that catalyzes the carbon-carbon bond cleavage during alpha-oxidation of 3-methyl-branched fatty acids. Proc Natl Acad Sci USA 96:10039-10044 (Pubitemid 29422508)
19. Goyer A (2010) Thiamine in plants: aspects of its metabolism and functions. Phytochemistry 71:1615-1624
20. Haferkamp I (2007) The diverse members of the mitochondrial carrier family in plants. FEBS Lett 581:2375-2379 (Pubitemid 46726294)
21. Hohmann S, Meacock PA (1998) Thiamin metabolism and thiamin diphosphate-dependent enzymes in the yeast Saccharomyces cerevisiae: genetic regulation. Biochim Biophys Acta 1385:201-219 (Pubitemid 28310789)
22. Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P (2008) Genevestigator v3: a reference expression database for the meta-Analysis of transcriptomes. Adv Bioinformatics 2008:420747
23. Iacopetta D, Carrisi C, De Filippis G, Calcagnile VM, Cappello AR, Chimento A, Curcio R, Santoro A, Vozza A, Dolce V, Palmieri F, Capobianco L (2010) The biochemical properties of the mitochondrial thiamine pyrophosphate carrier from Drosophila melanogaster. FEBS J 277:1172-1181
24. Jurgenson CT, Begley TP, Ealick SE (2009) The structural and biochemical foundations of thiamin biosynthesis. Annu Rev Biochem 78:569-603
25. Kirchberger S, Tjaden J, Neuhaus HE (2008) Characterization of the Arabidopsis Brittle1 transport protein and impact of reduced activity on plant metabolism. Plant J 56:51-63
26. Lingard MJ, Gidda SK, Bingham S, Rothstein SJ, Mullen RT, Trelease RN (2008) Arabidopsis peroxin11c-e, fission1b, and dynaminrelated protein3A cooperate in cell cycle-Associated replication of peroxisomes. Plant Cell 20:1567-1585 (Pubitemid 352844164)
27. Lindhurst MJ, Fiermonte G, Song S, Struys E, De Leonardis F, Schwartzberg PL, Chen A, Castegna A, Verhoeven N, Mathews CK, Palmieri F, Biesecker LG (2006) Knockout of Slc25a19 causes mitochondrial thiamine pyrophosphate depletion, embryonic lethality, CNS malformations, and anemia. Proc Natl Acad Sci USA 103:15927-15932 (Pubitemid 44657569)
28. Magee PT, Robichon-Szulmajster H (1968) The regulation of isoleucine-valine biosynthesis in Saccharomyces cerevisiae: 3. Properties and regulation of the activity of acetohydroxyacid synthetase. Eur J Biochem 3:507-511
29. Marobbio CM, Vozza A, Harding M, Bisaccia F, Palmieri F, Walker JE (2002) Identification and reconstitution of the yeast mitochondrial transporter for thiamine pyrophosphate. EMBO J 21:5653-5661 (Pubitemid 35315265)
30. Millar AH, Whelan J, Soole KL, Day DA (2011) Organization and regulation of mitochondrial respiration in plants. Annu Rev Plant Biol 62:79-104
31. Müller M, Gocke D, Pohl M (2009) Thiamin diphosphate in biological chemistry: exploitation of diverse thiamin diphosphate-dependent enzymes for asymmetric chemoenzymatic synthesis. FEBS J 276:2894-2904
32. Noiriel A, Naponelli V, Bozzo GG, Gregory JF 3rd, Hanson AD (2007) Folate salvage in plants: pterin aldehyde reduction is mediated by multiple non-specific aldehyde reductases. Plant J 51:378-389 (Pubitemid 47106538)
33. Palmieri F, Pierri CL (2010a) Mitochondrial metabolite transport. Essays Biochem 47:37-52
34. Palmieri F, Pierri CL (2010b) Structure and function of mitochondrial carriers-role of the transmembrane helix P and G residues in the gating and transport mechanism. FEBS Lett 584:1931-1939
35. Palmieri F, Pierri CL, De Grassi A, Nunes-Nesi A, Fernie AR (2011) Evolution, structure and function of mitochondrial carriers: a review with new insights. Plant J 66:161-181
36. Palmieri F, Rieder B, Ventrella A, Blanco E, Do PT, Nunes-Nesi A, Trauth AU, Fiermonte G, Tjaden J, Agrimi G, Kirchberger S, Paradies E, Fernie AR, Neuhaus HE (2009) Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins. J Biol Chem 284:31249-31259
37. Palmieri L, Rottensteiner H, GirzalskyW, Scarcia P, Palmieri F, Erdmann R (2001) Identification and functional reconstitution of the yeast peroxisomal adenine nucleotide transporter. EMBOJ 20:5049-5059 (Pubitemid 32910901)
38. Palmisano A, Zara V, Hönlinger A, Vozza A, Dekker PJ, Pfanner N, Palmieri F (1998) Targeting and assembly of the oxoglutarate carrier: general principles for biogenesis of carrier proteins of the mitochondrial inner membrane. Biochem J 333:151-158 (Pubitemid 28342504)
39. Postma E, Verduyn C, Scheffers WA, Van Dijken JP (1989) Enzymic analysis of the crabtree effect in glucose-limited chemostat cultures of Saccharomyces cerevisiae. Appl Environ Microbiol 55:468-477
40. Pribat A, Noiriel A, Morse AM, Davis JM, Fouquet R, Loizeau K, Ravanel S, Frank W, Haas R, Reski R, Bedair M, Sumner LW, Hanson AD (2010) Nonflowering plants possess a unique folatedependent phenylalanine hydroxylase that is localized in chloroplasts. Plant Cell 22:3410-3422
41. Rapala-Kozik M, Kowalska E, Ostrowska K (2008) Modulation of thiamine metabolism in Zea mays seedlings under conditions of abiotic stress. J Exp Bot 59:4133-4143
42. Raschke M, Bürkle L, Müller N, Nunes-Nesi A, Fernie AR, Arigoni D, Amrhein N, Fitzpatrick TB (2007) Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proc Natl Acad Sci USA 104:19637-19642
43. Rudhe C, Chew O, Whelan J, Glaser E (2002) A novel in vitro system for simultaneous import of precursor proteins into mitochondria and chloroplasts. Plant J 30:213-220 (Pubitemid 34536241)
44. Schmittgen TD, Livak KJ (2008) Analyzing real-Time PCR data by the comparative CT method. Nat Protoc 3:1101-1108 (Pubitemid 351818697)
45. Schnable JC, Springer NM, Freeling M (2011) Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc Natl Acad Sci USA 108:4069-4074
46. Sherman F (1991) Getting started with yeast. Methods Enzymol 194:3-21
47. Shockey JM, Gidda SK, Chapital DC, Kuan JC, Dhanoa PK, Bland JM, Rothstein SJ, Mullen RT, Dyer JM (2006) Tung tree DGAT1 and DGAT2 have nonredundant functions in triacylglycerol biosynthesis and are localized to different subdomains of the endoplasmic reticulum. Plant Cell 18:2294-2313 (Pubitemid 44484727)
48. Steinhauser D, Usadel B, Luedemann A, Thimm O, Kopka J (2004) CSB.DB: a comprehensive systems-biology database. Bioinformatics 20:3647-3651 (Pubitemid 40136804)
49. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
50. Taylor NL, Howell KA, Heazlewood JL, Tan TY, Narsai R, Huang S, Whelan J, Millar AH (2010) Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination. Plant 154:691-704
51. Waller JC, Ellens KW, Alvarez S, Loizeau K, Ravanel S, Hanson AD (2012) Mitochondrial and plastidial COG0354 proteins have folate-dependent functions in iron-sulfur cluster metabolism. J Exp Bot 63:403-411
52. Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M (2010) Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol 8:e1000409
53. Yui R, Iketani S, Mikami T, Kubo T (2003) Antisense inhibition of mitochondrial pyruvate dehydrogenase E1 alpha subunit in anther tapetum causes male sterility. Plant J 34:57-66 (Pubitemid 36524307)
54. Zara V, Ferramosca A, Robitaille-Foucher P, Palmieri F, Young JC (2009) Mitochondrial carrier protein biogenesis: role of the chaperone Hcs70 and Hsp90. Biochem J 419:369-375