Salinisphaera orenii sp. nov., isolated from a solar saltern

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 8, 2012, Pages 1877-1883

  Park, Soo Je ^a   Cha, In Tae ^a   Kim, So Jeong ^a   Shin, Kee Sun ^b   Hong, YoungSoo ^a   Roh, Dong Hyun ^a   Rhee, Sung Keun ^a  

^a Chungbuk National University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; UBIQUINONE; UBIQUINONE 8; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA BASE COMPOSITION; GAMMAPROTEOBACTERIA; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; SALINISPHAERA DOKDONENSIS; SALINISPHAERA HYDROTHERMALIS; SALINISPHAERA ORENII; SALINISPHAERA SHABANENSIS; SEDIMENT;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; UBIQUINONE; WATER MICROBIOLOGY;

GAMMAPROTEOBACTERIA; SALINISPHAERA; SALINISPHAERA SHABANENSIS;

EID: 84864649807     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028647-0     Document Type: Article

References (31)

1. Antunes, A., Eder, W., Fareleira, P., Santos, H. & Huber, R. (2003). Salinisphaera shabanensis gen. nov., sp. nov., a novel, moderately halophilic bacterium from the brine-seawater interface of the Shaban Deep, Red Sea. Extremophiles 7, 29-34.
2. Atlas, R. M. (2004). Handbook of Microbiological Media, 3rd edn. Boca Raton, FL: CRC Press.
3. Bae, G. D., Hwang, C. Y., Kim, H. M. & Cho, B. C. (2010). Salinisphaera dokdonensis sp. nov., isolated from surface seawater. Int J Syst Evol Microbiol 60, 680-685.
4. Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Crespo-Medina, M., Chatziefthimiou, A., Cruz-Matos, R., Pérez-Rodríguez, I., Barkay, T., Lutz, R. A., Starovoytov, V. & Vetriani, C. (2009). Salinisphaera hydrothermalis sp. nov., a mesophilic, halotolerant, facultatively autotrophic, thiosulfate-oxidizing gammaproteobacterium from deep-sea hydrothermal vents, and emended description of the genus Salinisphaera. Int J Syst Evol Microbiol 59, 1497-1503.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Forbes, L. (1981). Rapid flagella stain. J Clin Microbiol 13, 807-809.
9. Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
10. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
11. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by highperformance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
12. Ito, T., Sugita, K., Yumoto, I., Nodasaka, Y. & Okabe, S. (2005). Thiovirga sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium isolated from a microaerobic waste-water biofilm. Int J Syst Evol Microbiol 55, 1059-1064.
13. Kelly, D. P. & Wood, A. P. (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. Int J Syst Evol Microbiol 50, 511-516.
14. Kidd, K. K. & Sgaramella-Zonta, L. A. (1971). Phylogenetic analysis: concepts and methods. Am J Hum Genet 23, 235-252.
15. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
16. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
17. MIDI (1999). Sherlock Microbial Identification System, Operating Manual version 3.0. Newark, DE: MIDI.
18. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
19. Park, S. J., Kang, C. H. & Rhee, S. K. (2006). Characterization of the microbial diversity in a Korean solar saltern by 16S rRNA gene analysis. J Microbiol Biotechnol 16, 1640-1645.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sievert, S. M., Heidorn, T. & Kuever, J. (2000). Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfuroxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus. Int J Syst Evol Microbiol 50, 1229-1237.
22. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
23. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
24. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
25. Tittsler, R. P. & Sandholzer, L. A. (1936). The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31, 575-580.
26. Vreeland, R. H., Litchfield, C. D., Martin, E. L. & Elliot, E. (1980). Halomonas elongata, a new genus and species of extremely salttolerant bacteria. Int J Syst Bacteriol 30, 485-495.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
28. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
29. Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfatereducing bacteria. In The Prokaryotes, 2nd edn, pp. 3352-3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. Berlin: Springer.
30. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2886.
31. Yi, H., Chang, Y. H., Oh, H. W., Bae, K. S. & Chun, J. (2003). Zooshikella ganghwensis gen. nov., sp. nov., isolated from tidal flat sediments. Int J Syst Evol Microbiol 53, 1013-1018.