Salinisphaera hydrothermalis sp. nov., a mesophilic, halotolerant, facultatively autotrophic, thiosulfate-oxidizing gammaproteobacterium from deep-sea hydrothermal vents, and emended description of the genus Salinisphaera

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1497-1503

  Crespo Medina, Melitza ^a   Chatziefthimiou, Aspassia ^a   Cruz Matos, Ramaydalis ^a   Pérez Rodríguez, Ileana ^a   Barkay, Tamar ^a   Lutz, Richard A ^a   Starovoytov, Valentin ^a   Vetriani, Constantino ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; CYTOSINE; GENOMIC DNA; GUANINE; THIOSULFATE; ALKANE 1 MONOOXYGENASE; BACTERIAL DNA; RIBULOSEBISPHOSPHATE CARBOXYLASE; RNA 16S; SEA WATER; SODIUM CHLORIDE;

ARTICLE; AUTOTROPHY; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; CARBON SOURCE; CHEMOLITHOAUTOTROPH; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA CONTENT; ENERGY RESOURCE; GAMMAPROTEOBACTERIA; GRAM NEGATIVE BACTERIUM; HETEROTROPHY; HYDROTHERMAL VENT; HYDROTHERMAL VENT SPECIES; MESOPHILIC BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SALINISPHAERA HYDROTHERMALIS; SALINISPHAERA SHABANENSIS; SALT TOLERANCE; TEMPERATURE SENSITIVITY; CHEMOAUTOTROPHY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HEAT; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; PH; PHYSIOLOGY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA; SALINISPHAERA; SALINISPHAERA SHABANENSIS;

ALKANE 1-MONOOXYGENASE; BASE COMPOSITION; CHEMOAUTOTROPHIC GROWTH; DNA, BACTERIAL; GAMMAPROTEOBACTERIA; HOT TEMPERATURE; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHYLOGENY; RIBULOSE-BISPHOSPHATE CARBOXYLASE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY; THIOSULFATES;

EID: 67651123132     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.005058-0     Document Type: Article

References (27)

1. Antunes, A., Eder, W., Fareleira, P., Santos, H. & Huber, R. (2003). Salinisphaera shabanensis gen. nov., sp. nov., a novel, moderately halophilic bacterium from the brine-seawater interface of the Shaban Deep, Red Sea. Extremophiles 7, 29-34.
2. Brault, M., Simoneit, B. R. T., Marty, J. C. & Saliot, A. (1988). Hydrocarbons in waters and particulate material from hydrothermal environments at the East Pacific Rise, 13° N. Org Geochem 12, 209-219.
3. Durand, P., Reysenbach, A. L., Prieur, D. & Pace, N. (1993). Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea vent in Fiji Basin. Arch Microbiol 159, 39-44.
4. Elsaied, H. E., Kimura, H. & Naganuma, T. (2007). Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems. Extremophiles 11, 191-202.
5. Galtier, N., Gouy, M. & Gautier, C. (1996). SeaView and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
6. Holt, J. G., Krieg, N. R., Sneath, P. H. A., Staley, J. T. & Williams, S. T. (1994). Bergey's Manual of Determinative Bacteriology, 9th edn. Baltimore: Williams & Wilkins.
7. Jannasch, H. W. (1995). Microbial interactions with hydrothermal fluids. In Seafloor Hydrothermal Systems: Physical, Chemical, Biological and Geological Interactions, pp. 273-296. Edited by S. E. Humphris, R. A. Zierenberg, L. S. Mullineaux & R. E. Thomson. Washington, DC: American Geophysical Union.
8. Jannasch, H. W., Wirsen, C. O., Nelson, D. C. & Robertson, L. A. (1985). Thiomicrospira crunogena sp. nov., a colorless sulfur-oxidizing bacterium from a deep-sea hydrothermal vent. Int J Syst Bacteriol 35, 422-424.
9. Karl, D. M. (1995). Ecology of free-living, hydrothermal vent microbial communities. In The Microbiology of Deep-Sea Hydrothermal Vents, pp. 35-124. Edited by D. M. Karl. Boca Raton, FL: CRC Press.
10. Kaye, J. Z. & Baross, J. A. (2000). High incidence of halotolerant bacteria in Pacific hydrothermal-vent and pelagic environments. FEMS Microbiol Ecol 32, 249-260.
11. Kaye, J. Z., Marquez, M. C., Ventosa, A. & Baross, J. A. (2004). Halomonas neptunia sp. nov., Halomonas sulfidaeris sp. nov., Halomonas axialensis sp. nov. and Halomonas hydrothermalis sp. nov.: halophilic bacteria isolated from deep-sea hydrothermal-vent environments. Int J Syst Evol Microbiol 54, 499-511.
12. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
13. McCollom, T. M. & Shock, E. L. (1997). Geochemical constraints on chemolithoautotrophic metabolisms by microorganisms in seafloor hydrothermal systems. Geochim Cosmochim Acta 61, 4375-4391.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Nanba, K., King, G. M. & Dunfield, K. (2004). Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/ oxygenase. Appl Environ Microbiol 70, 2245-2253.
16. Raguénès, G., Christen, R., Guezennec, J., Pignet, P. & Barbier, G. (1997). Vibrio diabolicus sp. nov., a new polysaccharide-secreting organism isolated from a deep-sea hydrothermal vent polychaete annelid, Alvinella pompejana. Int J Syst Bacteriol 47, 989-995.
17. Ruby, E. G. & Jannasch, H. W. (1982). Physiological characteristics of Thiomicrospira sp. strain L-12 isolated from deep-sea hydrothermal vents. J Bacteriol 149, 161-165.
18. Ruby, E. G., Wirsen, C. O. & Jannasch, H. W. (1981). Chemolithotrophic sulfur-oxidizing bacteria from the Galapagos rift hydrothermal vents. Appl Environ Microbiol 42, 317-324.
19. Simon-Colin, C., Raguénès, G., Cozien, J. & Guezennec, J. G. (2008). Halomonas profundus sp. nov., a new PHA-producing bacterium isolated from a deep-sea hydrothermal vent shrimp. J Appl Microbiol 104, 1425-1432.
20. Smits, T. H. M., Röthlisberger, M., Witholt, B. & van Beilen, J. B. (1999). Molecular screening for alkane hydroxylase genes in Gram-negative and Gram positive strains. Environ Microbiol 1, 307-317.
21. Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K. H. & Horikoshi, K. (2004). Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific. Int J Syst Evol Microbiol 54, 2325-2333.
22. Teske, A., Brinkhoff, T., Muyzer, G., Moser, D. P., Rethmeier, J. & Jannasch, H. W. (2000). Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents. Appl Environ Microbiol 66, 3125-3133.
23. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
24. Vetriani, C., Speck, M. D., Ellor, S. V., Lutz, R. A. & Starovoytov, V. (2004). Thermovibrio ammonificans sp. nov., a thermophilic, chemolithotrophic, nitrate-ammonifying bacterium from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 54, 175-181.
25. Vetriani, C., Chew, Y. S., Miller, S. M., Yagi, J., Coombs, J., Lutz, R. A. & Barkay, T. (2005). Mercury adaptation among bacteria from a deep-sea hydrothermal vent. Appl Environ Microbiol 71, 220-226.
26. Voordeckers, J. W., Starovoytov, V. & Vetriani, C. (2005). Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. Int J Syst Evol Microbiol 55, 773-779.
27. Xu, H. H. & Tabita, F. R. (1996). Ribulose-1,5-bisphosphate carboxylase/oxygenase gene expression and diversity of Lake Erie planktonic microorganisms. Appl Environ Microbiol 62, 1913-1921.