Thiovirga sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium isolated from a microaerobic waste-water biofilm

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 3, 2005, Pages 1059-1064

  Ito, Tsukasa ^a   Sugita, Kenichi ^a   Yumoto, Isao ^b   Nodasaka, Yoshinobu ^a   Okabe, Satoshi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DNA; GUANINE; ISOPRENOID; NITRATE; OXYGEN; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; SULFIDE; SULFUR; THIOSULFATE;

ANAEROBIC GROWTH; ANIMAL CELL; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; BIOFILM; CHEMOTAXONOMY; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA CONTENT; GAMMAPROTEOBACTERIA; GRAM NEGATIVE BACTERIUM; HALOTHIOBACILLUS; MONOPHYLY; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TEMPERATURE; THIOVIRGA SULFUROXYDANS; WASTE WATER;

ANAEROBIOSIS; BASE COMPOSITION; BIOFILMS; DNA, BACTERIAL; DNA, RIBOSOMAL; GAMMAPROTEOBACTERIA; GENES, RRNA; GROWTH INHIBITORS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; NITRATES; OXIDATION-REDUCTION; OXYGEN; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SODIUM CHLORIDE; SULFIDES; SULFUR; TEMPERATURE; THIOSULFATES; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; HALOTHIOBACILLUS;

EID: 19544364908     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63467-0     Document Type: Article

References (19)

1. Angert, E. R., Northup, D. E., Reysenbach, A.-L., Peek, A. S., Goebel, B. M. & Pace, N. R. (1998). Molecular phylogenetic analysis of a bacterial community in Sulphur River, Parker Cave, Kentucky. Am Mineralogist 83, 1583-1592.
2. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. & Wheeler, D. L. (2003). GenBank. Nucleic Acids Res 31, 23-27.
3. Brinkhoff, T., Muyzer, G., Wirsen, C. O. & Kuever, J. (1999a). Thiomicrospira kuenenii sp. nov. and Thiomicrospira frisia sp. nov., two mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacteria isolated from an intertidal mud flat. Int J Syst Bacteriol 49, 385-392.
4. Brinkhoff, T., Muyzer, G., Wirsen, C. O. & Kuever, J. (1999b). Thiomicrospira chilensis sp. nov., a mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacterium isolated from a Thioploca mat. Int J Syst Bacteriol 49, 875-879.
5. Cline, J. D. (1969). Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14, 454-458.
6. Cole, J. R., Chai, B., Marsh, T. L. & 8 other authors (2003). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442-443.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Hobbie, J. E., Daley, R. J. & Jasper, S. (1977). Use of nucleopore filters for counting bacteria by fluorescence microscopy. Appl Environ Microbiol 33, 1225-1228.
9. Ito, T., Sugita, K. & Okabe, S. (2004). Isolation, characterization, and in situ detection of a novel chemolithoautotrophic sulfur-oxidizing bacterium in wastewater biofilms growing under microaerophilic conditions. Appl Environ Microbiol 70, 3122-3129.
10. Kelly, D. P. & Wood, A. P. (2000). Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. Int J Syst Evol Microbiol 50, 511-516.
11. Kuenen, J. G., Robertson, L. A. & Tuovinen, O. H. (1991). The genera Thiobacillus, Thiomicrospira, and Thiosphaera. In The Prokaryotes, 2nd edn, vol. 3, pp. 2638-2657. Edited by A. Balows, H. G. Truper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
12. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
13. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
14. Purohit, K., McFadden, B. A. & Shaykh, M. M. (1976). D-Ribulose-1,5-bisphosphate carboxylase and polyhedral inclusion bodies in Thiobacillus intermedius. J Bacteriol 127, 516-522.
15. Shively, J. M., Ball, F. L. & Kline, B. W. (1973). Electron microscopy of the carboxysomes (polyhedral bodies) of Thiobacillus neapolitanus. JI Bacteriol 116, 1405-1411.
16. Sievert, S. M., Heidorn, T. & Kuever, J. (2000). Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sunr-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus. Int J Syst Evol Microbiol 50, 1229-1237.
17. Sunna, A. & Bergquist, P. L. (2003). A gene encoding a novel extremely thermostable 1,4-β-xylanase isolated directly from an environmental DNA sample. Extremophiles 7, 63-70.
18. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
19. Yumoto, I., Yamazaki, K., Hishinuma, M., Nodasaka, Y., Suemori, A., Nakajima, K., Inoue, N. & Kawasaki, K. (2001). Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater. Int J Syst Evol Microbiol 51, 349-355.