메뉴 건너뛰기




Volumn 103, Issue 3, 2012, Pages 616-626

Bayesian approach to MSD-based analysis of particle motion in live cells

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CELL SURVIVAL; DIFFUSION; MOTION; MOVEMENT (PHYSIOLOGY);

EID: 84864644815     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.06.029     Document Type: Article
Times cited : (116)

References (56)
  • 1
    • 48449087576 scopus 로고    scopus 로고
    • Robust single-particle tracking in live-cell time-lapse sequences
    • K. Jaqaman, and D. Loerke G. Danuser Robust single-particle tracking in live-cell time-lapse sequences Nat. Methods 5 2008 695 702
    • (2008) Nat. Methods , vol.5 , pp. 695-702
    • Jaqaman, K.1    Loerke, D.2    Danuser, G.3
  • 2
    • 48449104310 scopus 로고    scopus 로고
    • Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes
    • A. Sergé, and N. Bertaux D. Marguet Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes Nat. Methods 5 2008 687 694
    • (2008) Nat. Methods , vol.5 , pp. 687-694
    • Sergé, A.1    Bertaux, N.2    Marguet, D.3
  • 4
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • DOI 10.1038/nmeth929, PII NMETH929
    • M.J. Rust, M. Bates, and X.W. Zhuang Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM) Nat. Methods 3 2006 793 795 (Pubitemid 44445825)
    • (2006) Nature Methods , vol.3 , Issue.10 , pp. 793-795
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 5
    • 0037832404 scopus 로고    scopus 로고
    • Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization
    • DOI 10.1126/science.1084398
    • A. Yildiz, and J.N. Forkey P.R. Selvin Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization Science 300 2003 2061 2065 (Pubitemid 36760126)
    • (2003) Science , vol.300 , Issue.5628 , pp. 2061-2065
    • Yildiz, A.1    Forkey, J.N.2    McKinney, S.A.3    Ha, T.4    Goldman, Y.E.5    Selvin, P.R.6
  • 7
    • 33847131016 scopus 로고    scopus 로고
    • Virus trafficking - Learning from single-virus tracking
    • DOI 10.1038/nrmicro1615, PII NRMICRO1615
    • B. Brandenburg, and X. Zhuang Virus trafficking: learning from single-virus tracking Nat. Rev. Microbiol. 5 2007 197 208 (Pubitemid 46291279)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.3 , pp. 197-208
    • Brandenburg, B.1    Zhuang, X.2
  • 8
    • 80051978813 scopus 로고    scopus 로고
    • Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function
    • K. Jaqaman, and H. Kuwata S. Grinstein Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function Cell 146 2011 593 606
    • (2011) Cell , vol.146 , pp. 593-606
    • Jaqaman, K.1    Kuwata, H.2    Grinstein, S.3
  • 9
    • 33646021963 scopus 로고    scopus 로고
    • Long-range directional movement of an interphase chromosome site
    • C.H. Chuang, and A.E. Carpenter A.S. Belmont Long-range directional movement of an interphase chromosome site Curr. Biol. 16 2006 825 831
    • (2006) Curr. Biol. , vol.16 , pp. 825-831
    • Chuang, C.H.1    Carpenter, A.E.2    Belmont, A.S.3
  • 10
    • 0035316574 scopus 로고    scopus 로고
    • Chromosome territories, nuclear architecture and gene regulation in mammalian cells
    • DOI 10.1038/35066075
    • T. Cremer, and C. Cremer Chromosome territories, nuclear architecture and gene regulation in mammalian cells Nat. Rev. Genet. 2 2001 292 301 (Pubitemid 33674777)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.4 , pp. 292-301
    • Cremer, T.1    Cremer, C.2
  • 11
    • 79953770641 scopus 로고    scopus 로고
    • Intracellular transport by an anchored homogeneously contracting F-actin meshwork
    • M. Mori, and N. Monnier P. Lénárt Intracellular transport by an anchored homogeneously contracting F-actin meshwork Curr. Biol. 21 2011 606 611
    • (2011) Curr. Biol. , vol.21 , pp. 606-611
    • Mori, M.1    Monnier, N.2    Lénárt, P.3
  • 12
    • 80051969526 scopus 로고    scopus 로고
    • Complete kinetochore tracking reveals error-prone homologous chromosome biorientation in mammalian oocytes
    • T.S. Kitajima, M. Ohsugi, and J. Ellenberg Complete kinetochore tracking reveals error-prone homologous chromosome biorientation in mammalian oocytes Cell 146 2011 568 581
    • (2011) Cell , vol.146 , pp. 568-581
    • Kitajima, T.S.1    Ohsugi, M.2    Ellenberg, J.3
  • 15
    • 0034015656 scopus 로고    scopus 로고
    • Real-time imaging of fluorescent flagellar filaments
    • DOI 10.1128/JB.182.10.2793-2801.2000
    • L. Turner, W.S. Ryu, and H.C. Berg Real-time imaging of fluorescent flagellar filaments J. Bacteriol. 182 2000 2793 2801 (Pubitemid 30246910)
    • (2000) Journal of Bacteriology , vol.182 , Issue.10 , pp. 2793-2801
    • Turner, L.1    Ryu, W.S.2    Berg, H.C.3
  • 16
    • 33750374139 scopus 로고    scopus 로고
    • Linking data to models: Data regression
    • DOI 10.1038/nrm2030, PII NRM2030
    • K. Jaqaman, and G. Danuser Linking data to models: data regression Nat. Rev. Mol. Cell Biol. 7 2006 813 819 (Pubitemid 44627474)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.11 , pp. 813-819
    • Jaqaman, K.1    Danuser, G.2
  • 17
    • 0029162080 scopus 로고
    • Detection of temporary lateral confinement of membrane proteins using single-particle tracking analysis
    • R. Simson, E.D. Sheets, and K. Jacobson Detection of temporary lateral confinement of membrane proteins using single-particle tracking analysis Biophys. J. 69 1995 989 993
    • (1995) Biophys. J. , vol.69 , pp. 989-993
    • Simson, R.1    Sheets, E.D.2    Jacobson, K.3
  • 18
    • 79953862262 scopus 로고    scopus 로고
    • Analysis of molecular diffusion by first-passage time variance identifies the size of confinement zones
    • V. Rajani, and G. Carrero C.W. Cairo Analysis of molecular diffusion by first-passage time variance identifies the size of confinement zones Biophys. J. 100 2011 1463 1472
    • (2011) Biophys. J. , vol.100 , pp. 1463-1472
    • Rajani, V.1    Carrero, G.2    Cairo, C.W.3
  • 19
    • 77950686225 scopus 로고    scopus 로고
    • Quantitative analysis of single particle trajectories: Mean maximal excursion method
    • V. Tejedor, and O. Bénichou R. Metzler Quantitative analysis of single particle trajectories: mean maximal excursion method Biophys. J. 98 2010 1364 1372
    • (2010) Biophys. J. , vol.98 , pp. 1364-1372
    • Tejedor, V.1    Bénichou, O.2    Metzler, R.3
  • 21
    • 0001201909 scopus 로고
    • Bayesian model selection in social research
    • A.E. Raftery Bayesian model selection in social research Sociol. Methodol. 25 1995 111 163
    • (1995) Sociol. Methodol. , vol.25 , pp. 111-163
    • Raftery, A.E.1
  • 22
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and bayesian approaches over likelihood ratio tests
    • DOI 10.1080/10635150490522304
    • D. Posada, and T.R. Buckley Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests Syst. Biol. 53 2004 793 808 (Pubitemid 39568279)
    • (2004) Systematic Biology , vol.53 , Issue.5 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 24
    • 1842532350 scopus 로고    scopus 로고
    • The bayesian revolution in genetics
    • DOI 10.1038/nrg1318
    • M.A. Beaumont, and B. Rannala The Bayesian revolution in genetics Nat. Rev. Genet. 5 2004 251 261 (Pubitemid 38435621)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.4 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 25
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • DOI 10.1126/science.1105809
    • K. Sachs, and O. Perez G.P. Nolan Causal protein-signaling networks derived from multiparameter single-cell data Science 308 2005 523 529 (Pubitemid 40570578)
    • (2005) Science , vol.308 , Issue.5721 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 26
    • 0842288337 scopus 로고    scopus 로고
    • Inferring Cellular Networks Using Probabilistic Graphical Models
    • DOI 10.1126/science.1094068
    • N. Friedman Inferring cellular networks using probabilistic graphical models Science 303 2004 799 805 (Pubitemid 38174650)
    • (2004) Science , vol.303 , Issue.5659 , pp. 799-805
    • Friedman, N.1
  • 27
    • 73449090455 scopus 로고    scopus 로고
    • Learning rates and states from biophysical time series: A Bayesian approach to model selection and single-molecule FRET data
    • J.E. Bronson, and J. Fei C.H. Wiggins Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data Biophys. J. 97 2009 3196 3205
    • (2009) Biophys. J. , vol.97 , pp. 3196-3205
    • Bronson, J.E.1    Fei, J.2    Wiggins, C.H.3
  • 28
    • 84860424351 scopus 로고    scopus 로고
    • Bayesian approach to the analysis of fluorescence correlation spectroscopy data I: Theory
    • J. He, S.M. Guo, and M. Bathe Bayesian approach to the analysis of fluorescence correlation spectroscopy data I: theory Anal. Chem. 84 2012 3871 3879
    • (2012) Anal. Chem. , vol.84 , pp. 3871-3879
    • He, J.1    Guo, S.M.2    Bathe, M.3
  • 29
    • 84860477071 scopus 로고    scopus 로고
    • Bayesian approach to the analysis of fluorescence correlation spectroscopy data II: Application to simulated and in vitro data
    • S.M. Guo, and J. He M. Bathe Bayesian approach to the analysis of fluorescence correlation spectroscopy data II: application to simulated and in vitro data Anal. Chem. 84 2012 3880 3888
    • (2012) Anal. Chem. , vol.84 , pp. 3880-3888
    • Guo, S.M.1    He, J.2    Bathe, M.3
  • 30
    • 0025997180 scopus 로고
    • Single particle tracking. Analysis of diffusion and flow in two-dimensional systems
    • H. Qian, M.P. Sheetz, and E.L. Elson Single particle tracking. Analysis of diffusion and flow in two-dimensional systems Biophys. J. 60 1991 910 921
    • (1991) Biophys. J. , vol.60 , pp. 910-921
    • Qian, H.1    Sheetz, M.P.2    Elson, E.L.3
  • 31
    • 0027504198 scopus 로고
    • Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells
    • A. Kusumi, Y. Sako, and M. Yamamoto Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Effects of calcium-induced differentiation in cultured epithelial cells Biophys. J. 65 1993 2021 2040 (Pubitemid 23334870)
    • (1993) Biophysical Journal , vol.65 , Issue.5 , pp. 2021-2040
    • Kusumi, A.1    Sako, Y.2    Yamamoto, M.3
  • 32
    • 78651304653 scopus 로고    scopus 로고
    • Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium
    • X. Michalet Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium Phys. Rev. E. 82 2010 041914
    • (2010) Phys. Rev. E. , vol.82 , pp. 041914
    • Michalet, X.1
  • 33
    • 0030953956 scopus 로고    scopus 로고
    • Single-particle tracking: The distribution of diffusion coefficients
    • M.J. Saxton Single-particle tracking: the distribution of diffusion coefficients Biophys. J. 72 1997 1744 1753 (Pubitemid 27133113)
    • (1997) Biophysical Journal , vol.72 , Issue.4 , pp. 1744-1753
    • Saxton, M.J.1
  • 34
    • 73449096431 scopus 로고    scopus 로고
    • A hidden Markov model for single particle tracks quantifies dynamic interactions between LFA-1 and the actin cytoskeleton
    • R. Das, C.W. Cairo, and D. Coombs A hidden Markov model for single particle tracks quantifies dynamic interactions between LFA-1 and the actin cytoskeleton PLoS Comput. Biol. 5 2009 e1000556
    • (2009) PLoS Comput. Biol. , vol.5 , pp. 1000556
    • Das, R.1    Cairo, C.W.2    Coombs, D.3
  • 35
    • 77951217914 scopus 로고    scopus 로고
    • Dynamic regulation of CD45 lateral mobility by the spectrin-ankyrin cytoskeleton of T cells
    • C.W. Cairo, and R. Das D.E. Golan Dynamic regulation of CD45 lateral mobility by the spectrin-ankyrin cytoskeleton of T cells J. Biol. Chem. 285 2010 11392 11401
    • (2010) J. Biol. Chem. , vol.285 , pp. 11392-11401
    • Cairo, C.W.1    Das, R.2    Golan, D.E.3
  • 36
    • 68949208665 scopus 로고    scopus 로고
    • Protein friction limits diffusive and directed movements of kinesin motors on microtubules
    • V. Bormuth, and V. Varga E. Schäffer Protein friction limits diffusive and directed movements of kinesin motors on microtubules Science 325 2009 870 873
    • (2009) Science , vol.325 , pp. 870-873
    • Bormuth, V.1    Varga, V.2    Schäffer, E.3
  • 37
    • 78751687016 scopus 로고    scopus 로고
    • Detailed tuning of structure and intramolecular communication are dispensable for processive motion of myosin VI
    • M.W. Elting, and Z. Bryant J.A. Spudich Detailed tuning of structure and intramolecular communication are dispensable for processive motion of myosin VI Biophys. J. 100 2011 430 439
    • (2011) Biophys. J. , vol.100 , pp. 430-439
    • Elting, M.W.1    Bryant, Z.2    Spudich, J.A.3
  • 39
    • 77953494844 scopus 로고    scopus 로고
    • Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm
    • S.C. Weber, A.J. Spakowitz, and J.A. Theriot Bacterial chromosomal loci move subdiffusively through a viscoelastic cytoplasm Phys. Rev. Lett. 104 2010 238102
    • (2010) Phys. Rev. Lett. , vol.104 , pp. 238102
    • Weber, S.C.1    Spakowitz, A.J.2    Theriot, J.A.3
  • 40
    • 77957305311 scopus 로고    scopus 로고
    • Developing in vivo biophysics by fishing for single molecules
    • X. Wang, T. Wohland, and V. Korzh Developing in vivo biophysics by fishing for single molecules Dev. Biol. 347 2010 1 8
    • (2010) Dev. Biol. , vol.347 , pp. 1-8
    • Wang, X.1    Wohland, T.2    Korzh, V.3
  • 41
    • 36549102647 scopus 로고
    • Error estimates on averages of correlated data
    • H. Flyvbjerg, and H.G. Petersen Error estimates on averages of correlated data J. Chem. Phys. 91 1989 461 466
    • (1989) J. Chem. Phys. , vol.91 , pp. 461-466
    • Flyvbjerg, H.1    Petersen, H.G.2
  • 42
    • 27844521293 scopus 로고    scopus 로고
    • A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
    • J. Schäfer, and K. Strimmer A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics Stat. Appl. Genet. Mol. Biol. 4 2005 e32
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4 , pp. 32
    • Schäfer, J.1    Strimmer, K.2
  • 43
    • 0346961488 scopus 로고    scopus 로고
    • A well-conditioned estimator for large-dimensional covariance matrices
    • DOI 10.1016/S0047-259X(03)00096-4
    • O. Ledoit, and M. Wolf A well-conditioned estimator for large-dimensional covariance matrices J. Multivar. Anal. 88 2004 365 411 (Pubitemid 38033261)
    • (2004) Journal of Multivariate Analysis , vol.88 , Issue.2 , pp. 365-411
    • Ledoit, O.1    Wolf, M.2
  • 44
    • 27944462549 scopus 로고
    • A reference Bayesian test for nested hypotheses and its relationship to the Schwarz criterion
    • R.E. Kass, and L. Wasserman A reference Bayesian test for nested hypotheses and its relationship to the Schwarz criterion J. Am. Stat. Assoc. 90 1995 928 934
    • (1995) J. Am. Stat. Assoc. , vol.90 , pp. 928-934
    • Kass, R.E.1    Wasserman, L.2
  • 45
    • 23844466646 scopus 로고    scopus 로고
    • A contractile nuclear actin network drives chromosome congression in oocytes
    • DOI 10.1038/nature03810
    • P. Lénárt, and C.P. Bacher J. Ellenberg A contractile nuclear actin network drives chromosome congression in oocytes Nature 436 2005 812 818 (Pubitemid 41160634)
    • (2005) Nature , vol.436 , Issue.7052 , pp. 812-818
    • Lenart, P.1    Bacher, C.P.2    Daigle, N.3    Hand, A.R.4    Eils, R.5    Terasaki, M.6    Ellenberg, J.7
  • 46
    • 2942551253 scopus 로고    scopus 로고
    • Anomalous diffusion probes microstructure dynamics of entangled F-actin networks
    • I.Y. Wong, and M.L. Gardel D.A. Weitz Anomalous diffusion probes microstructure dynamics of entangled F-actin networks Phys. Rev. Lett. 92 2004 178101
    • (2004) Phys. Rev. Lett. , vol.92 , pp. 178101
    • Wong, I.Y.1    Gardel, M.L.2    Weitz, D.A.3
  • 47
    • 0034499331 scopus 로고    scopus 로고
    • Enhanced diffusion in active intracellular transport
    • DOI 10.1103/PhysRevLett.85.5655
    • A. Caspi, R. Granek, and M. Elbaum Enhanced diffusion in active intracellular transport Phys. Rev. Lett. 85 2000 5655 5658 (Pubitemid 32090288)
    • (2000) Physical Review Letters , vol.85 , Issue.26 , pp. 5655-5658
    • Caspi, A.1    Granek, R.2    Elbaum, M.3
  • 50
    • 77249179685 scopus 로고    scopus 로고
    • Quantifying biomolecule diffusivity using an optimal Bayesian method
    • G. Voisinne, A. Alexandrou, and J.B. Masson Quantifying biomolecule diffusivity using an optimal Bayesian method Biophys. J. 98 2010 596 605
    • (2010) Biophys. J. , vol.98 , pp. 596-605
    • Voisinne, G.1    Alexandrou, A.2    Masson, J.B.3
  • 52
    • 33845792555 scopus 로고    scopus 로고
    • CellProfiler: Image analysis software for identifying and quantifying cell phenotypes
    • A.E. Carpenter, and T.R. Jones D.M. Sabatini CellProfiler: image analysis software for identifying and quantifying cell phenotypes Genome Biol. 7 2006 R100
    • (2006) Genome Biol. , vol.7 , pp. 100
    • Carpenter, A.E.1    Jones, T.R.2    Sabatini, D.M.3
  • 53
    • 77956339402 scopus 로고    scopus 로고
    • CellCognition: Time-resolved phenotype annotation in high-throughput live cell imaging
    • M. Held, and M.H.A. Schmitz D.W. Gerlich CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging Nat. Methods 7 2010 747 754
    • (2010) Nat. Methods , vol.7 , pp. 747-754
    • Held, M.1    Schmitz, M.H.A.2    Gerlich, D.W.3
  • 54
    • 35649027944 scopus 로고    scopus 로고
    • Versatile fluorescent probes for actin filaments based on the actin-binding domain of utrophin
    • DOI 10.1002/cm.20226
    • B.M. Burkel, G. von Dassow, and W.M. Bement Versatile fluorescent probes for actin filaments based on the actin-binding domain of utrophin Cell Motil. Cytoskeleton 64 2007 822 832 (Pubitemid 350035031)
    • (2007) Cell Motility and the Cytoskeleton , vol.64 , Issue.11 , pp. 822-832
    • Burkel, B.M.1    Von Dassow, G.2    Bement, W.M.3
  • 55
    • 0344835675 scopus 로고    scopus 로고
    • Nuclear envelope breakdown in starfish oocytes proceeds by partial NPC disassembly followed by a rapidly spreading fenestration of nuclear membranes
    • DOI 10.1083/jcb.200211076
    • P. Lénárt, and G. Rabut J. Ellenberg Nuclear envelope breakdown in starfish oocytes proceeds by partial NPC disassembly followed by a rapidly spreading fenestration of nuclear membranes J. Cell Biol. 160 2003 1055 1068 (Pubitemid 36443874)
    • (2003) Journal of Cell Biology , vol.160 , Issue.7 , pp. 1055-1068
    • Lenart, P.1    Rabut, G.2    Daigle, N.3    Hand, A.R.4    Terasaki, M.5    Ellenberg, J.6
  • 56
    • 33744821342 scopus 로고    scopus 로고
    • Probing single-cell micromechanics in vivo: The microrheology of C. elegans developing embryos
    • DOI 10.1529/biophysj.105.080606
    • B.R. Daniels, B.C. Masi, and D. Wirtz Probing single-cell micromechanics in vivo: the microrheology of C. elegans developing embryos Biophys. J. 90 2006 4712 4719 (Pubitemid 43830915)
    • (2006) Biophysical Journal , vol.90 , Issue.12 , pp. 4712-4719
    • Daniels, B.R.1    Masi, B.C.2    Wirtz, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.