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Volumn 40, Issue 13, 2012, Pages 5975-5987

The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/SNF) complex are mediated by the SNR1/SNF5 regulatory subunit

Author keywords

[No Author keywords available]

Indexed keywords

BRM PROTEIN; DNA DIRECTED RNA POLYMERASE III; ECDYSONE; PROTEIN SNR1; PROTEIN SWI; TRANSCRIPTION FACTOR SNF; UNCLASSIFIED DRUG;

EID: 84864462761     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks288     Document Type: Article
Times cited : (36)

References (64)
  • 1
    • 22544432870 scopus 로고    scopus 로고
    • The dynamics of chromatin remodeling at promoters
    • Mellor, J. (2005) The dynamics of chromatin remodeling at promoters. Mol. Cell, 19, 147-157.
    • (2005) Mol. Cell , vol.19 , pp. 147-157
    • Mellor, J.1
  • 3
    • 33744916194 scopus 로고    scopus 로고
    • Chromatin remodeling by isw2 and swi/snf requires DNA translocation inside the nucleosome
    • Zofall, M., Persinger, J., Kassabov, S.R. and Bartholomew, B. (2006) Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nat. Struct. Mol. Biol., 13, 339-346.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 339-346
    • Zofall, M.1    Persinger, J.2    Kassabov, S.R.3    Bartholomew, B.4
  • 5
    • 0037440460 scopus 로고    scopus 로고
    • Snr1 is an essential subunit in a subset of drosophila brm complexes, targeting specific functions during development
    • Zraly, C.B., Marenda, D.R., Nanchal, R., Cavalli, G., Muchardt, C. and Dingwall, A.K. (2003) SNR1 is an essential subunit in a subset of Drosophila Brm complexes, targeting specific functions during development. Dev. Biol., 253, 291-308.
    • (2003) Dev. Biol. , vol.253 , pp. 291-308
    • Zraly, C.B.1    Marenda, D.R.2    Nanchal, R.3    Cavalli, G.4    Muchardt, C.5    Dingwall, A.K.6
  • 6
    • 0030033699 scopus 로고    scopus 로고
    • RNA polymerase II holoenzyme contains swi/snf regulators involved in chromatin remodeling
    • Wilson, C.J., Chao, D.M., Imbalzano, A.N., Schnitzler, G.R., Kingston, R.E. and Young, R.A. (1996) RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling. Cell, 84, 235-244.
    • (1996) Cell , vol.84 , pp. 235-244
    • Wilson, C.J.1    Chao, D.M.2    Imbalzano, A.N.3    Schnitzler, G.R.4    Kingston, R.E.5    Young, R.A.6
  • 7
    • 55449092929 scopus 로고    scopus 로고
    • Drosophila kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II
    • Srinivasan, S., Dorighi, K.M. and Tamkun, J.W. (2008) Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II. PLoS Genet., 4, e1000217.
    • (2008) PLoS Genet. , vol.4
    • Srinivasan, S.1    Dorighi, K.M.2    Tamkun, J.W.3
  • 8
    • 30044441988 scopus 로고    scopus 로고
    • The human swi/snf subunit brm is a regulator of alternative splicing
    • Batsché, E., Yaniv, M. and Muchardt, C. (2006) The human SWI/SNF subunit Brm is a regulator of alternative splicing. Nat. Struct. Mol. Biol., 13, 22-29.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 22-29
    • Batsché, E.1    Yaniv, M.2    Muchardt, C.3
  • 9
    • 67149138094 scopus 로고    scopus 로고
    • Swi/snf associates with nascent pre-mrnps and regulates alternative pre-mrna processing
    • Tyagi, A., Ryme, J., Brodin, D., Ostlund Farrants, A.K. and Visa, N. (2009) SWI/SNF associates with nascent pre-mRNPs and regulates alternative pre-mRNA processing. PLoS Genet., 5, e1000470.
    • (2009) PLoS Genet , vol.5
    • Tyagi, A.1    Ryme, J.2    Brodin, D.3    Ostlund Farrants, A.K.4    Visa, N.5
  • 10
    • 0033082238 scopus 로고    scopus 로고
    • Reconstitution of a core chromatin remodeling complex from swi/snf subunits
    • Phelan, M.L., Sif, S., Narlikar, G.J. and Kingston, R.E. (1999) Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Mol. Cell, 3, 247-253.
    • (1999) Mol. Cell , vol.3 , pp. 247-253
    • Phelan, M.L.1    Sif, S.2    Narlikar, G.J.3    Kingston, R.E.4
  • 11
    • 14544308853 scopus 로고    scopus 로고
    • Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes
    • Mohrmann, L. and Verrijzer, C.P. (2005) Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes. Biochim. Biophys. Acta, 1681, 59-73.
    • (2005) Biochim. Biophys. Acta , vol.1681 , pp. 59-73
    • Mohrmann, L.1    Verrijzer, C.P.2
  • 12
    • 33646869229 scopus 로고    scopus 로고
    • Chromatin remodelling in mammalian differentiation: Lessons from ATP-dependent remodellers
    • de la Serna, I.L., Ohkawa, Y. and Imbalzano, A.N. (2006) Chromatin remodelling in mammalian differentiation: lessons from ATP-dependent remodellers. Nat. Rev. Genet., 7, 461-473.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 461-473
    • De La Serna, I.L.1    Ohkawa, Y.2    Imbalzano, A.N.3
  • 14
    • 44349105786 scopus 로고    scopus 로고
    • ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a
    • Gao, X., Tate, P., Hu, P., Tjian, R., Skarnes, W.C. and Wang, Z. (2008) ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a. Proc. Natl Acad. Sci. USA, 105, 6656-6661.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 6656-6661
    • Gao, X.1    Tate, P.2    Hu, P.3    Tjian, R.4    Skarnes, W.C.5    Wang, Z.6
  • 16
    • 62549095522 scopus 로고    scopus 로고
    • Swi/snf-brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells
    • Kidder, B.L., Palmer, S. and Knott, J.G. (2009) SWI/SNF-Brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells. Stem Cells, 27, 317-328.
    • (2009) Stem Cells , vol.27 , pp. 317-328
    • Kidder, B.L.1    Palmer, S.2    Knott, J.G.3
  • 17
    • 75749101495 scopus 로고    scopus 로고
    • Chromatin remodelling during development
    • Ho, L. and Crabtree, G.R. (2010) Chromatin remodelling during development. Nature, 463, 474-484.
    • (2010) Nature , vol.463 , pp. 474-484
    • Ho, L.1    Crabtree, G.R.2
  • 18
    • 0037216560 scopus 로고    scopus 로고
    • The drosophila snr1 (SNF5/INI1) subunit directs essential developmental functions of the brahma chromatin remodeling complex
    • Marenda, D.R., Zraly, C.B., Feng, Y., Egan, S. and Dingwall, A.K. (2003) The Drosophila SNR1 (SNF5/INI1) subunit directs essential developmental functions of the Brahma chromatin remodeling complex. Mol. Cell. Biol., 23, 289-305.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 289-305
    • Marenda, D.R.1    Zraly, C.B.2    Feng, Y.3    Egan, S.4    Dingwall, A.K.5
  • 19
    • 64949113367 scopus 로고    scopus 로고
    • The swi/snf complex and cancer
    • Reisman, D., Glaros, S. and Thompson, E.A. (2009) The SWI/SNF complex and cancer. Oncogene, 28, 1653-1668.
    • (2009) Oncogene , vol.28 , pp. 1653-1668
    • Reisman, D.1    Glaros, S.2    Thompson, E.A.3
  • 20
    • 66149155091 scopus 로고    scopus 로고
    • The role of smarcb1/ini1 in development of rhabdoid tumor
    • Roberts, C.W. and Biegel, J.A. (2009) The role of SMARCB1/INI1 in development of rhabdoid tumor. Cancer Biol. Ther., 8, 412-416.
    • (2009) Cancer Biol. Ther. , vol.8 , pp. 412-416
    • Roberts, C.W.1    Biegel, J.A.2
  • 21
    • 1042290351 scopus 로고    scopus 로고
    • The swi/snf complex-chromatin and cancer
    • Roberts, C.W. and Orkin, S.H. (2004) The SWI/SNF complex-chromatin and cancer. Nat. Rev. Cancer, 4, 133-142.
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 133-142
    • Roberts, C.W.1    Orkin, S.H.2
  • 24
    • 79151478268 scopus 로고    scopus 로고
    • Histone lysine demethylases function as co-repressors of swi/snf remodeling activities during drosophila wing development
    • Curtis, B.J., Zraly, C.B., Marenda, D.R. and Dingwall, A.K. (2011) Histone lysine demethylases function as co-repressors of SWI/SNF remodeling activities during Drosophila wing development. Dev. Biol., 350, 534-547.
    • (2011) Dev. Biol. , vol.350 , pp. 534-547
    • Curtis, B.J.1    Zraly, C.B.2    Marenda, D.R.3    Dingwall, A.K.4
  • 25
    • 1542267407 scopus 로고    scopus 로고
    • The drosophila brahma (SWI/SNF) chromatin remodeling complex exhibits cell-type specific activation and repression functions
    • Marenda, D.R., Zraly, C.B. and Dingwall, A.K. (2004) The Drosophila Brahma (SWI/SNF) chromatin remodeling complex exhibits cell-type specific activation and repression functions. Dev. Biol., 267, 279-293.
    • (2004) Dev. Biol. , vol.267 , pp. 279-293
    • Marenda, D.R.1    Zraly, C.B.2    Dingwall, A.K.3
  • 26
    • 33845935522 scopus 로고    scopus 로고
    • Hormone-response genes are direct in vivo regulatory targets of brahma (SWI/SNF) complex function
    • Zraly, C.B., Middleton, F.A. and Dingwall, A.K. (2006) Hormone-response genes are direct in vivo regulatory targets of Brahma (SWI/SNF) complex function. J. Biol. Chem., 281, 35305-35315.
    • (2006) J. Biol. Chem. , vol.281 , pp. 35305-35315
    • Zraly, C.B.1    Middleton, F.A.2    Dingwall, A.K.3
  • 27
    • 0029866248 scopus 로고    scopus 로고
    • Molecular characterization of the 71E late puff in drosophila melanogaster reveals a family of novel genes
    • Wright, L.G., Chen, T., Thummel, C.S. and Guild, G.M. (1996) Molecular characterization of the 71E late puff in Drosophila melanogaster reveals a family of novel genes. J. Mol. Biol., 255, 387-400.
    • (1996) J. Mol. Biol. , vol.255 , pp. 387-400
    • Wright, L.G.1    Chen, T.2    Thummel, C.S.3    Guild, G.M.4
  • 28
    • 78449269327 scopus 로고    scopus 로고
    • Plant and animal sensors of conserved microbial signatures
    • Ronald, P.C. and Beutler, B. (2010) Plant and animal sensors of conserved microbial signatures. Science, 330, 1061-1064.
    • (2010) Science , vol.330 , pp. 1061-1064
    • Ronald, P.C.1    Beutler, B.2
  • 30
    • 0019731694 scopus 로고
    • Staging the metamorphosis of drosophila melanogaster
    • Bainbridge, S.P. and Bownes, M. (1981) Staging the metamorphosis of Drosophila melanogaster. J. Embryol. Exp. Morphol., 66, 57-80.
    • (1981) J. Embryol. Exp. Morphol. , vol.66 , pp. 57-80
    • Bainbridge, S.P.1    Bownes, M.2
  • 31
    • 0028847244 scopus 로고
    • The drosophila E93 gene from the 93f early puff displays stage-and tissue-specific regulation by 20-hydroxyecdysone
    • Baehrecke, E.H. and Thummel, C.S. (1995) The Drosophila E93 gene from the 93F early puff displays stage-and tissue-specific regulation by 20-hydroxyecdysone. Dev. Biol., 171, 85-97.
    • (1995) Dev. Biol. , vol.171 , pp. 85-97
    • Baehrecke, E.H.1    Thummel, C.S.2
  • 32
    • 0028708276 scopus 로고
    • Methods for quantitative analysis of transcription in larvae and prepupae
    • Andres, A.J. and Thummel, C.S. (1994) Methods for quantitative analysis of transcription in larvae and prepupae. Methods Cell Biol., 44, 565-573.
    • (1994) Methods Cell Biol. , vol.44 , pp. 565-573
    • Andres, A.J.1    Thummel, C.S.2
  • 33
    • 0035888026 scopus 로고    scopus 로고
    • Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene
    • Rao, S., Procko, E. and Shannon, M.F. (2001) Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene. J. Immunol., 167, 4494-4503.
    • (2001) J. Immunol. , vol.167 , pp. 4494-4503
    • Rao, S.1    Procko, E.2    Shannon, M.F.3
  • 34
    • 77953530683 scopus 로고    scopus 로고
    • Changes in chromatin structure and methylation of the human interleukin-1-gene during monopoiesis
    • Wessels, I., Fleischer, D., Rink, L. and Uciechowski, P. (2010) Changes in chromatin structure and methylation of the human interleukin-1-gene during monopoiesis. Immunology, 130, 410-417.
    • (2010) Immunology , vol.130 , pp. 410-417
    • Wessels, I.1    Fleischer, D.2    Rink, L.3    Uciechowski, P.4
  • 35
    • 33747835616 scopus 로고    scopus 로고
    • Mapping the distribution of chromatin proteins by chip on chip
    • Négre, N., Lavrov, S., Hennetin, J., Bellis, M. and Cavalli, G. (2006) Mapping the distribution of chromatin proteins by ChIP on chip. Methods Enzymol., 410, 316-341.
    • (2006) Methods Enzymol , vol.410 , pp. 316-341
    • Négre, N.1    Lavrov, S.2    Hennetin, J.3    Bellis, M.4    Cavalli, G.5
  • 36
    • 58249086425 scopus 로고    scopus 로고
    • Understanding the words of chromatin regulation
    • Wu, J.I., Lessard, J. and Crabtree, G.R. (2009) Understanding the words of chromatin regulation. Cell, 136, 200-206.
    • (2009) Cell , vol.136 , pp. 200-206
    • Wu, J.I.1    Lessard, J.2    Crabtree, G.R.3
  • 38
    • 33846170060 scopus 로고    scopus 로고
    • Functional differentiation of swi/snf remodelers in transcription and cell cycle control
    • Moshkin, Y.M., Mohrmann, L., van Ijcken, W.F. and Verrijzer, C.P. (2007) Functional differentiation of SWI/SNF remodelers in transcription and cell cycle control. Mol. Cell. Biol., 27, 651-661.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 651-661
    • Moshkin, Y.M.1    Mohrmann, L.2    Van Ijcken, W.F.3    Verrijzer, C.P.4
  • 39
    • 50249122170 scopus 로고    scopus 로고
    • Two subunits specific to the PBAP chromatin remodeling complex have distinct and redundant functions during drosophila development
    • Carrera, I., Zavadil, J. and Treisman, J.E. (2008) Two subunits specific to the PBAP chromatin remodeling complex have distinct and redundant functions during drosophila development. Mol. Cell. Biol., 28, 5238-5250.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 5238-5250
    • Carrera, I.1    Zavadil, J.2    Treisman, J.E.3
  • 40
    • 47549090254 scopus 로고    scopus 로고
    • Nelf-mediated stalling of pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
    • Gilchrist, D.A., Nechaev, S., Lee, C., Ghosh, S.K., Collins, J.B., Li, L., Gilmour, D.S. and Adelman, K. (2008) NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly. Genes Dev., 22, 1921-1933.
    • (2008) Genes Dev. , vol.22 , pp. 1921-1933
    • Gilchrist, D.A.1    Nechaev, S.2    Lee, C.3    Ghosh, S.K.4    Collins, J.B.5    Li, L.6    Gilmour, D.S.7    Adelman, K.8
  • 41
    • 70350442978 scopus 로고    scopus 로고
    • Tfiih-associated cdk7 kinase functions in phosphorylation of C-terminal domain ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II
    • Glover-Cutter, K., Larochelle, S., Erickson, B., Zhang, C., Shokat, K., Fisher, R.P. and Bentley, D.L. (2009) TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA Polymerase II. Mol. Cell. Biol., 29, 5455-5464.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 5455-5464
    • Glover-Cutter, K.1    Larochelle, S.2    Erickson, B.3    Zhang, C.4    Shokat, K.5    Fisher, R.P.6    Bentley, D.L.7
  • 42
    • 70249104647 scopus 로고    scopus 로고
    • Defining mechanisms that regulate RNA polymerase II transcription in vivo
    • Fuda, N.J., Ardehali, M.B. and Lis, J.T. (2009) Defining mechanisms that regulate RNA Polymerase II transcription in vivo. Nature, 461, 186-192.
    • (2009) Nature , vol.461 , pp. 186-192
    • Fuda, N.J.1    Ardehali, M.B.2    Lis, J.T.3
  • 46
    • 0029915243 scopus 로고    scopus 로고
    • Drosophila RNA polymerase II mutants that affect transcription elongation
    • Chen, Y., Chafin, D., Price, D.H. and Greenleaf, A.L. (1996) Drosophila RNA polymerase II mutants that affect transcription elongation. J. Biol. Chem., 271, 5993-5999.
    • (1996) J. Biol. Chem. , vol.271 , pp. 5993-5999
    • Chen, Y.1    Chafin, D.2    Price, D.H.3    Greenleaf, A.L.4
  • 48
    • 58349085943 scopus 로고    scopus 로고
    • Promoter proximal pausing on genes in metazoans
    • Gilmour, D.S. (2009) Promoter proximal pausing on genes in metazoans. Chromosoma, 118, 1-10.
    • (2009) Chromosoma , vol.118 , pp. 1-10
    • Gilmour, D.S.1
  • 50
    • 0034687134 scopus 로고    scopus 로고
    • RNA polymerase II promoter-proximal pausing upregulates C-fos gene expression
    • Fivaz, J., Bassi, M.C., Pinaud, S. and Mirkovitch, J. (2000) RNA polymerase II promoter-proximal pausing upregulates C-fos gene expression. Gene, 255, 185-194.
    • (2000) Gene , vol.255 , pp. 185-194
    • Fivaz, J.1    Bassi, M.C.2    Pinaud, S.3    Mirkovitch, J.4
  • 51
    • 0026440185 scopus 로고
    • The block to transcriptional elongation within the human C-myc gene is determined in the promoter-proximal region
    • Krumm, A., Meulia, T., Brunvand, M. and Groudine, M. (1992) The block to transcriptional elongation within the human C-myc gene is determined in the promoter-proximal region. Genes Dev., 6, 2201-2213.
    • (1992) Genes Dev. , vol.6 , pp. 2201-2213
    • Krumm, A.1    Meulia, T.2    Brunvand, M.3    Groudine, M.4
  • 53
    • 77954684922 scopus 로고    scopus 로고
    • From chromatin to splicing: RNA-processing as a total artwork
    • Tilgner, H. and Guigo, R. (2010) From chromatin to splicing: RNA-processing as a total artwork. Epigenetics, 5, 180-184.
    • (2010) Epigenetics , vol.5 , pp. 180-184
    • Tilgner, H.1    Guigo, R.2
  • 54
    • 77954752911 scopus 로고    scopus 로고
    • Intragenic chromatin modifications: A new layer in alternative splicing regulation
    • Schor, I.E., Alló, M. and Kornblihtt, A.R. (2010) Intragenic chromatin modifications: a new layer in alternative splicing regulation. Epigenetics, 5, 174-179.
    • (2010) Epigenetics , vol.5 , pp. 174-179
    • Schor, I.E.1    Alló, M.2    Kornblihtt, A.R.3
  • 56
    • 67649648237 scopus 로고    scopus 로고
    • Control of inducible gene expression by signal-dependent transcriptional elongation
    • Hargreaves, D.C., Horng, T. and Medzhitov, R. (2009) Control of inducible gene expression by signal-dependent transcriptional elongation. Cell, 138, 129-145.
    • (2009) Cell , vol.138 , pp. 129-145
    • Hargreaves, D.C.1    Horng, T.2    Medzhitov, R.3
  • 57
    • 0037398519 scopus 로고    scopus 로고
    • How introns influence and enhance eukaryotic gene expression
    • Le Hir, H., Nott, A. and Moore, M.J. (2003) How introns influence and enhance eukaryotic gene expression. Trends Biochem. Sci., 28, 215-220.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 215-220
    • Le Hir, H.1    Nott, A.2    Moore, M.J.3
  • 58
    • 34547109901 scopus 로고    scopus 로고
    • Introns regulate the rate of unstable mRNA decay
    • Zhao, C. and Hamilton, T. (2007) Introns regulate the rate of unstable mRNA decay. J. Biol. Chem., 282, 20230-20237.
    • (2007) J. Biol. Chem. , vol.282 , pp. 20230-20237
    • Zhao, C.1    Hamilton, T.2
  • 60
    • 67349232451 scopus 로고    scopus 로고
    • Intron retention generates ANKRD1 splice variants that are co-regulated with the main transcript in normal and failing myocardium
    • Torrado, M., Iglesias, R., Nespereira, B., Centeno, A., Ló pez, E. and Mikhailov, A.T. (2009) Intron retention generates ANKRD1 splice variants that are co-regulated with the main transcript in normal and failing myocardium. Gene, 440, 28-41.
    • (2009) Gene , vol.440 , pp. 28-41
    • Torrado, M.1    Iglesias, R.2    Nespereira, B.3    Centeno, A.4    López, E.5    Mikhailov, A.T.6
  • 64
    • 5144225649 scopus 로고    scopus 로고
    • Snr1 (INI1/SNF5) mediates important cell growth functions of the drosophila brahma (SWI/SNF) chromatin remodeling complex
    • Zraly, C.B., Marenda, D.R. and Dingwall, A.K. (2004) SNR1 (INI1/SNF5) mediates important cell growth functions of the Drosophila Brahma (SWI/SNF) chromatin remodeling complex. Genetics, 168, 199-214.
    • (2004) Genetics , vol.168 , pp. 199-214
    • Zraly, C.B.1    Marenda, D.R.2    Dingwall, A.K.3


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