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Volumn 7, Issue 3, 2012, Pages

High density microarray analysis reveals new insights into genetic footprints of listeria monocytogenes strains involved in listeriosis outbreaks

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE; CONTROLLED STUDY; DNA FOOTPRINTING; DNA HYBRIDIZATION; DNA MICROARRAY; EPIDEMIC; GASTROENTERITIS; GENE CLUSTER; GENE SEQUENCE; GENETIC TRANSCRIPTION; LISTERIA MONOCYTOGENES; LISTERIOSIS; MICROARRAY ANALYSIS; NONHUMAN; SEROTYPE; SINGLE NUCLEOTIDE POLYMORPHISM; CLUSTER ANALYSIS; GENETICS; HUMAN; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; VALIDATION STUDY;

EID: 84858690222     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032896     Document Type: Article
Times cited : (27)

References (43)
  • 2
    • 33749654541 scopus 로고    scopus 로고
    • Listeria monocytogenes
    • In: Miliotis MD, Bier JW, editors, New York, Marcel Dekker, Inc
    • Datta AR, (2003) "Listeria monocytogenes". In: Miliotis MD, Bier JW, editors. International handbook of foodborne pathogens New York Marcel Dekker, Inc pp. 105-121.
    • (2003) International Handbook of Foodborne Pathogens , pp. 105-121
    • Datta, A.R.1
  • 3
    • 85026887854 scopus 로고    scopus 로고
    • Foodborne listeriosis
    • In: Ryser ET, Marth EH, editors, Boca Raton, CRC Press
    • Norton DM, Braden CR, (2007) Foodborne listeriosis. In: Ryser ET, Marth EH, editors. Listeria, listeriosis and food safety Boca Raton CRC Press pp. 305-356.
    • (2007) Listeria, Listeriosis and Food Safety , pp. 305-356
    • Norton, D.M.1    Braden, C.R.2
  • 4
    • 17644378780 scopus 로고    scopus 로고
    • Gastroenteritis due to Listeria monocytogenes
    • Ooi ST, Lorber B, (2005) Gastroenteritis due to Listeria monocytogenes. Clin Infect Dis 40: 1327-1332.
    • (2005) Clin Infect Dis , vol.40 , pp. 1327-1332
    • Ooi, S.T.1    Lorber, B.2
  • 5
    • 77956838078 scopus 로고    scopus 로고
    • Serotyping of Listeria monocytogenes and related species
    • Seeliger HP, Hohne K, (2011) Serotyping of Listeria monocytogenes and related species. Methods Microbiol 31-49.
    • (2011) Methods Microbiol , pp. 31-49
    • Seeliger, H.P.1    Hohne, K.2
  • 7
    • 75649104350 scopus 로고    scopus 로고
    • Listeria as an enteroinvasive gastrointestinal pathogen
    • Barbuddhe SB, Chakraborty T, (2009) Listeria as an enteroinvasive gastrointestinal pathogen. Curr Top Microbiol Immunol 337: 173-195.
    • (2009) Curr Top Microbiol Immunol , vol.337 , pp. 173-195
    • Barbuddhe, S.B.1    Chakraborty, T.2
  • 8
    • 13644251504 scopus 로고    scopus 로고
    • Molecular and experimental virulence of Listeria monocytogenes strains isolated from cases with invasive listeriosis and febrile gastroenteritis
    • Franciosa G, Maugliani A, Floridi F, Aureli P, (2005) Molecular and experimental virulence of Listeria monocytogenes strains isolated from cases with invasive listeriosis and febrile gastroenteritis. FEMS Immunol Med Microbiol 43: 431-439.
    • (2005) FEMS Immunol Med Microbiol , vol.43 , pp. 431-439
    • Franciosa, G.1    Maugliani, A.2    Floridi, F.3    Aureli, P.4
  • 9
    • 0035316065 scopus 로고    scopus 로고
    • Characterization of Listeria monocytogenes strains involved in invasive and noninvasive listeriosis outbreaks by PCR-based fingerprinting techniques
    • Franciosa G, Tartaro S, Wedell-Neergaard C, Aureli P, (2001) Characterization of Listeria monocytogenes strains involved in invasive and noninvasive listeriosis outbreaks by PCR-based fingerprinting techniques. Appl Environ Microbiol 67: 1793-1799.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1793-1799
    • Franciosa, G.1    Tartaro, S.2    Wedell-Neergaard, C.3    Aureli, P.4
  • 10
    • 0033036276 scopus 로고    scopus 로고
    • Molecular epidemiology of an outbreak of febrile gastroenteritis caused by Listeria monocytogenes in cold-smoked rainbow trout
    • Miettinen MK, Siitonen A, Heiskanen P, Haajanen H, Bjorkroth KJ, et al. (1999) Molecular epidemiology of an outbreak of febrile gastroenteritis caused by Listeria monocytogenes in cold-smoked rainbow trout. J Clin Microbiol 37: 2358-2360.
    • (1999) J Clin Microbiol , vol.37 , pp. 2358-2360
    • Miettinen, M.K.1    Siitonen, A.2    Heiskanen, P.3    Haajanen, H.4    Bjorkroth, K.J.5
  • 11
    • 84943612438 scopus 로고    scopus 로고
    • Genomic division/lineages, epidemic clones and population structure
    • In: Dongyou L, editors, Boca Raton, CRC Press
    • Cheng Y, Siletzky RM, Kathariou S, (2008) Genomic division/lineages, epidemic clones and population structure. In: Dongyou L, editors. Handbook of Listeria monocytogenes Boca Raton CRC Press pp. 337-357.
    • (2008) Handbook of Listeria Monocytogenes , pp. 337-357
    • Cheng, Y.1    Siletzky, R.M.2    Kathariou, S.3
  • 12
    • 77956600970 scopus 로고    scopus 로고
    • Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification
    • Deng X, Phillippy AM, Li Z, Salzberg SL, Zhang W, (2010) Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification. BMC Genomics 11: 500.
    • (2010) BMC Genomics , vol.11 , pp. 500
    • Deng, X.1    Phillippy, A.M.2    Li, Z.3    Salzberg, S.L.4    Zhang, W.5
  • 13
    • 0001080878 scopus 로고
    • Genetic characterization of clones of the bacterium Listeria monocytogenes causing epidemic disease
    • Piffaretti JC, Kressebuch H, Aeschbacher M, Bille J, Bannerman E, et al. (1989) Genetic characterization of clones of the bacterium Listeria monocytogenes causing epidemic disease. Proc Natl Acad Sci U S A 86: 3818-3822.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 3818-3822
    • Piffaretti, J.C.1    Kressebuch, H.2    Aeschbacher, M.3    Bille, J.4    Bannerman, E.5
  • 14
    • 42449158530 scopus 로고    scopus 로고
    • Prophages in Listeria monocytogenes contain single-nucleotide polymorphisms that differentiate outbreak clones within epidemic clones
    • Chen Y, Knabel SJ, (2008) Prophages in Listeria monocytogenes contain single-nucleotide polymorphisms that differentiate outbreak clones within epidemic clones. J Clin Microbiol 46: 1478-1484.
    • (2008) J Clin Microbiol , vol.46 , pp. 1478-1484
    • Chen, Y.1    Knabel, S.J.2
  • 16
    • 10744221486 scopus 로고    scopus 로고
    • New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays
    • Doumith M, Cazalet C, Simoes N, Frangeul L, Jacquet C, et al. (2004) New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays. Infect Immun 72: 1072-1083.
    • (2004) Infect Immun , vol.72 , pp. 1072-1083
    • Doumith, M.1    Cazalet, C.2    Simoes, N.3    Frangeul, L.4    Jacquet, C.5
  • 17
    • 3843117769 scopus 로고    scopus 로고
    • Differentiation of the major Listeria monocytogenes serovars by multiplex PCR
    • Doumith M, Buchrieser C, Glaser P, Jacquet C, Martin P, (2004) Differentiation of the major Listeria monocytogenes serovars by multiplex PCR. J Clin Microbiol 42: 3819-3822.
    • (2004) J Clin Microbiol , vol.42 , pp. 3819-3822
    • Doumith, M.1    Buchrieser, C.2    Glaser, P.3    Jacquet, C.4    Martin, P.5
  • 18
    • 3242815331 scopus 로고    scopus 로고
    • Intraspecific phylogeny and lineage group identification based on the prfA virulence gene cluster of Listeria monocytogenes
    • Ward TJ, Gorski L, Borucki MK, Mandrell RE, Hutchins J, et al. (2004) Intraspecific phylogeny and lineage group identification based on the prfA virulence gene cluster of Listeria monocytogenes. J Bacteriol 186: 4994-5002.
    • (2004) J Bacteriol , vol.186 , pp. 4994-5002
    • Ward, T.J.1    Gorski, L.2    Borucki, M.K.3    Mandrell, R.E.4    Hutchins, J.5
  • 19
    • 2442531727 scopus 로고    scopus 로고
    • Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    • Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, et al. (2004) Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res 32: 2386-2395.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2386-2395
    • Nelson, K.E.1    Fouts, D.E.2    Mongodin, E.F.3    Ravel, J.4    DeBoy, R.T.5
  • 20
    • 60549116580 scopus 로고    scopus 로고
    • Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
    • Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, et al. (2008) Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics 9: 539.
    • (2008) BMC Genomics , vol.9 , pp. 539
    • Orsi, R.H.1    Borowsky, M.L.2    Lauer, P.3    Young, S.K.4    Nusbaum, C.5
  • 21
    • 0037401015 scopus 로고    scopus 로고
    • Detection of bacterial pathogens in environmental samples using DNA microarrays
    • Call DR, Borucki MK, Loge FJ, (2003) Detection of bacterial pathogens in environmental samples using DNA microarrays. J Microbiol Methods 53: 235-243.
    • (2003) J Microbiol Methods , vol.53 , pp. 235-243
    • Call, D.R.1    Borucki, M.K.2    Loge, F.J.3
  • 22
    • 8644289234 scopus 로고    scopus 로고
    • Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing
    • Borucki MK, Kim SH, Call DR, Smole SC, Pagotto F, (2004) Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing. J Clin Microbiol 42: 5270-5276.
    • (2004) J Clin Microbiol , vol.42 , pp. 5270-5276
    • Borucki, M.K.1    Kim, S.H.2    Call, D.R.3    Smole, S.C.4    Pagotto, F.5
  • 23
  • 24
    • 0041335360 scopus 로고    scopus 로고
    • Genome diversification in phylogenetic lineages I and II of Listeria monocytogenes: identification of segments unique to lineage II populations
    • Zhang C, Zhang M, Ju J, Nietfeldt J, Wise J, et al. (2003) Genome diversification in phylogenetic lineages I and II of Listeria monocytogenes: identification of segments unique to lineage II populations. J Bacteriol 185: 5573-5584.
    • (2003) J Bacteriol , vol.185 , pp. 5573-5584
    • Zhang, C.1    Zhang, M.2    Ju, J.3    Nietfeldt, J.4    Wise, J.5
  • 25
    • 0037316625 scopus 로고    scopus 로고
    • Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes
    • Call DR, Borucki MK, Besser TE, (2003) Mixed-genome microarrays reveal multiple serotype and lineage-specific differences among strains of Listeria monocytogenes. J Clin Microbiol 41: 632-639.
    • (2003) J Clin Microbiol , vol.41 , pp. 632-639
    • Call, D.R.1    Borucki, M.K.2    Besser, T.E.3
  • 26
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell E, Liu WM, Mei R, (2002) Robust estimators for expression analysis. Bioinformatics 18: 1585-1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 27
    • 84858635799 scopus 로고    scopus 로고
    • Statistical Algorithms Description Document. Affymetrix, Inc. Available:
    • Affymetrix, (2002) Statistical Algorithms Description Document. Affymetrix, Inc. Available:http://media.affymetrix.com/support/technical/whitepapers/sadd_whitepaper.pdf.
    • (2002)
    • Affymetrix1
  • 28
    • 79959911434 scopus 로고    scopus 로고
    • Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies
    • Jackson SA, Patel IR, Barnaba T, LeClerc JE, Cebula TA, (2011) Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies. BMC Genomics 12: 349.
    • (2011) BMC Genomics , vol.12 , pp. 349
    • Jackson, S.A.1    Patel, I.R.2    Barnaba, T.3    LeClerc, J.E.4    Cebula, T.A.5
  • 29
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 31
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 32
    • 33645326509 scopus 로고    scopus 로고
    • Comparison of Affymetrix GeneChip expression measures
    • Irizarry RA, Wu Z, Jaffee HA, (2006) Comparison of Affymetrix GeneChip expression measures. Bioinformatics 22: 789-794.
    • (2006) Bioinformatics , vol.22 , pp. 789-794
    • Irizarry, R.A.1    Wu, Z.2    Jaffee, H.A.3
  • 33
    • 67651232886 scopus 로고    scopus 로고
    • Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex
    • Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS, (2009) Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex. BMC Genomics 10: 296.
    • (2009) BMC Genomics , vol.10 , pp. 296
    • Abu-Ali, G.S.1    Lacher, D.W.2    Wick, L.M.3    Qi, W.4    Whittam, T.S.5
  • 34
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D, (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 35
    • 0036840257 scopus 로고    scopus 로고
    • Listeria monocytogenes virulence and pathogenicity, a food safety perspective
    • Kathariou S, (2002) Listeria monocytogenes virulence and pathogenicity, a food safety perspective. J Food Prot 65: 1811-1829.
    • (2002) J Food Prot , vol.65 , pp. 1811-1829
    • Kathariou, S.1
  • 36
    • 0024337032 scopus 로고
    • Analysis of Listeria monocytogenes by multilocus enzyme electrophoresis and application of the method to epidemiologic investigations
    • Bibb WF, Schwartz B, Gellin BG, Plikaytis BD, Weaver RE, (1989) Analysis of Listeria monocytogenes by multilocus enzyme electrophoresis and application of the method to epidemiologic investigations. Int J Food Microbiol 8: 233-239.
    • (1989) Int J Food Microbiol , vol.8 , pp. 233-239
    • Bibb, W.F.1    Schwartz, B.2    Gellin, B.G.3    Plikaytis, B.D.4    Weaver, R.E.5
  • 37
    • 27544510614 scopus 로고    scopus 로고
    • Computing recombination networks from binary sequences
    • Huson DH, Kloepper TH, (2005) Computing recombination networks from binary sequences. Bioinformatics 21 (Suppl 2): ii159-ii165.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Huson, D.H.1    Kloepper, T.H.2
  • 38
    • 0026911267 scopus 로고
    • Split decomposition: a new and useful approach to phylogenetic analysis of distance data
    • Bandelt HJ, Dress AW, (1992) Split decomposition: a new and useful approach to phylogenetic analysis of distance data. Mol Phylogenet Evol 1: 242-252.
    • (1992) Mol Phylogenet Evol , vol.1 , pp. 242-252
    • Bandelt, H.J.1    Dress, A.W.2
  • 39
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: analyzing and visualizing evolutionary data
    • Huson DH, (1998) SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 40
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D, (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 41
    • 77951597527 scopus 로고    scopus 로고
    • DNA probes for unambiguous identification of Listeria monocytogenes epidemic clone II strains
    • Cheng Y, Kim JW, Lee S, Siletzky RM, Kathariou S, (2010) DNA probes for unambiguous identification of Listeria monocytogenes epidemic clone II strains. Appl Environ Microbiol 76: 3061-3068.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 3061-3068
    • Cheng, Y.1    Kim, J.W.2    Lee, S.3    Siletzky, R.M.4    Kathariou, S.5
  • 42
    • 79958218670 scopus 로고    scopus 로고
    • comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence
    • Verghese B, Lok M, Wen J, Alessandria V, Chen Y, et al. (2011) comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence. Appl Environ Microbiol 77: 3279-3292.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3279-3292
    • Verghese, B.1    Lok, M.2    Wen, J.3    Alessandria, V.4    Chen, Y.5
  • 43
    • 77949463821 scopus 로고    scopus 로고
    • High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
    • Gilmour MW, Graham M, Van DG, Tyler S, Kent H, et al. (2010) High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics 11: 120.
    • (2010) BMC Genomics , vol.11 , pp. 120
    • Gilmour, M.W.1    Graham, M.2    Van, D.G.3    Tyler, S.4    Kent, H.5


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