메뉴 건너뛰기




Volumn 40, Issue W1, 2012, Pages

IntScore: A web tool for confidence scoring of biological interactions

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL INTERACTION; CALCULATION; COMPUTER ANALYSIS; COMPUTER PROGRAM; INTERNET; MACHINE LEARNING; MOLECULAR INTERACTION; PRIORITY JOURNAL; SCORING SYSTEM;

EID: 84864420140     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks492     Document Type: Article
Times cited : (29)

References (35)
  • 1
    • 41649119247 scopus 로고    scopus 로고
    • Protein networks in disease
    • Ideker, T. and Sharan, R. (2008) Protein networks in disease. Genome Res., 18, 644-652.
    • (2008) Genome Res. , vol.18 , pp. 644-652
    • Ideker, T.1    Sharan, R.2
  • 2
    • 78650373804 scopus 로고    scopus 로고
    • Network medicine: A network-based approach to human disease
    • Barabasi, A.-L., Gulbahce, N. and Loscalzo, J. (2011) Network medicine: a network-based approach to human disease. Nat. Rev. Genet., 12, 56-68.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 56-68
    • Barabasi, A.-L.1    Gulbahce, N.2    Loscalzo, J.3
  • 3
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal, M., Cusick, M.E. and Barabasi, A.-L. (2011) Interactome networks and human disease. Cell, 144, 986-998.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.-L.3
  • 4
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • Ideker, T. and Krogan, N.J. (2012) Differential network biology. Mol. Syst. Biol., 8, 565.
    • (2012) Mol. Syst. Biol. , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 5
    • 33751395622 scopus 로고    scopus 로고
    • The value of high quality protein-protein interaction networks for systems biology
    • Stelzl, U. and Wanker, E.E. (2006) The value of high quality protein-protein interaction networks for systems biology. Curr. Opin. Chem. Biol., 10, 551-558.
    • (2006) Curr. Opin. Chem. Biol. , vol.10 , pp. 551-558
    • Stelzl, U.1    Wanker, E.E.2
  • 6
    • 68949206409 scopus 로고    scopus 로고
    • Applying mass spectrometry-based proteomics to genetics, genomics and network biology
    • Gstaiger, M. and Aebersold, R. (2009) Applying mass spectrometry-based proteomics to genetics, genomics and network biology. Nat. Rev. Genet., 10, 617-627.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 617-627
    • Gstaiger, M.1    Aebersold, R.2
  • 7
    • 34548024598 scopus 로고    scopus 로고
    • Integrating physical and genetic maps: From genomes to interaction networks
    • Beyer, A., Bandyopadhyay, S. and Ideker, T. (2007) Integrating physical and genetic maps: from genomes to interaction networks. Nat. Rev. Genet., 8, 699-710.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 699-710
    • Beyer, A.1    Bandyopadhyay, S.2    Ideker, T.3
  • 8
    • 34249041230 scopus 로고    scopus 로고
    • Exploring genetic interactions and networks with yeast
    • Boone, C., Bussey, H. and Andrews, B.J. (2007) Exploring genetic interactions and networks with yeast. Nat. Rev. Genet., 8, 437-449.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 437-449
    • Boone, C.1    Bussey, H.2    Andrews, B.J.3
  • 13
    • 33747586075 scopus 로고    scopus 로고
    • A direct comparison of protein interaction confidence assignment schemes
    • Suthram, S., Shlomi, T., Ruppin, E., Sharan, R. and Ideker, T. (2006) A direct comparison of protein interaction confidence assignment schemes. BMC Bioinformatics, 7, 360.
    • (2006) BMC Bioinformatics , vol.7 , pp. 360
    • Suthram, S.1    Shlomi, T.2    Ruppin, E.3    Sharan, R.4    Ideker, T.5
  • 14
    • 48149084438 scopus 로고    scopus 로고
    • Increasing the reliability of protein interactomes
    • Chua, H.N. and Wong, L. (2008) Increasing the reliability of protein interactomes. Drug Discov. Today, 13, 652-658.
    • (2008) Drug Discov. Today , vol.13 , pp. 652-658
    • Chua, H.N.1    Wong, L.2
  • 15
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • Goldberg, D.S. and Roth, F.P. (2003) Assessing experimentally derived interactions in a small world. Proc. Natl Acad. Sci. USA, 100, 4372-4376.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P..2
  • 21
    • 46749130932 scopus 로고    scopus 로고
    • PRINCESS a protein interaction confidence evaluation system with multiple data sources
    • Li, D., Liu, W., Liu, Z., Wang, J., Liu, Q., Zhu, Y. and He, F. (2008) PRINCESS, a protein interaction confidence evaluation system with multiple data sources. Mol. Cell Proteom., 7, 1043-1052.
    • (2008) Mol. Cell Proteom. , vol.7 , pp. 1043-1052
    • Li, D.1    Liu, W.2    Liu, Z.3    Wang, J.4    Liu, Q.5    Zhu, Y.6    He, F.7
  • 23
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
    • Jansen, R. and Gerstein, M. (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr. Opin. Microbiol., 7, 535-545.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 25
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • Strogatz, S.H. (2001) Exploring complex networks. Nature, 410, 268-276.
    • (2001) Nature , vol.410 , pp. 268-276
    • Strogatz, S.H.1
  • 26
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of small-world networks
    • Watts, D.J. and Strogatz, S.H. (1998) Collective dynamics of small-world networks. Nature, 393, 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 27
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S. and Bork, P. (2002) Comparative assessment of large-scale data sets of protein-protein interactions. Nature, 417, 399-403.
    • (2002) Nature , vol.417 , pp. 399-403
    • Von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5    Fields, S.6    Bork, P.7
  • 28
    • 77958500367 scopus 로고    scopus 로고
    • Evidence mining and novelty assessment of protein-protein interactions with the Consensus Path DB plugin for Cytoscape
    • Pentchev, K., Ono, K., Herwig, R., Ideker, T. and Kamburov, A. (2010) Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinformatics, 26, 2796-2797.
    • (2010) Bioinformatics , vol.26 , pp. 2796-2797
    • Pentchev, K.1    Ono, K.2    Herwig, R.3    Ideker, T.4    Kamburov, A.5
  • 30
    • 77951942707 scopus 로고    scopus 로고
    • Gosemsim: An R package for measuring semantic similarity among GO terms and gene products
    • Yu, G., Li, F., Qin, Y., Bo, X., Wu, Y. and Wang, S. (2010) GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics, 26, 976-978.
    • (2010) Bioinformatics , vol.26 , pp. 976-978
    • Yu, G.1    Li, F.2    Qin, Y.3    Bo, X.4    Wu, Y.5    Wang, S.6
  • 31
    • 0034628487 scopus 로고    scopus 로고
    • Guilt-by-association goes global
    • Oliver, S. (2000) Guilt-by-association goes global. Nature, 403, 601-603.
    • (2000) Nature , vol.403 , pp. 601-603
    • Oliver, S.1
  • 33
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • Smoot, M.E., Ono, K., Ruscheinski, J., Wang, P.-L. and Ideker, T. (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics, 27, 431-432.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.-L.4    Ideker, T.5
  • 35
    • 0347759844 scopus 로고    scopus 로고
    • Detection of topological patterns in complex networks: Correlation profile of the internet
    • Maslov, S., Sneppen, K. and Zaliznyak, A. (2004) Detection of topological patterns in complex networks: correlation profile of the internet. Phys. A Stat. Mech. Appl., 333, 529-540.
    • (2004) Phys. A Stat. Mech. Appl. , vol.333 , pp. 529-540
    • Maslov, S.1    Sneppen, K.2    Zaliznyak, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.