Identification and molecular characterisation of HMW glutenin subunit 1By16* in wild emmer

Journal of Applied Genetics

Volumn 53, Issue 3, 2012, Pages 249-258

  Jin, M ^a   Xie, Z Z ^a   Ge, P ^a   Li, J ^a   Jiang, S S ^a   Subburaj, S ^a   Li, X H ^a   Zeller, F J ^b   Hsam, S L K ^b   Yan, Y M ^a  

^a CAPITAL NORMAL UNIVERSITY   (China)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

Gluten quality; HMW GS; SNPs; Wild emmer wheat

Indexed keywords

AMINO ACID; GLUTENIN;

1BY16 GENE; ALLELE; ALPHA HELIX; ARTICLE; GENE; GENE EXPRESSION; GENE ISOLATION; GENE SEQUENCE; GENETIC IDENTIFICATION; GENETIC VARIABILITY; MOLECULAR PHYLOGENY; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; TRITICUM TURGIDUM;

ALLELES; AMINO ACID SEQUENCE; BLOTTING, WESTERN; CHROMATOGRAPHY, LIQUID; CLONING, MOLECULAR; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENES, PLANT; GLUTENS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPEN READING FRAMES; PEPTIDES; PHYLOGENY; PLANT PROTEINS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; PROKARYOTIC CELLS; PROTEIN STRUCTURE, SECONDARY; PROTEIN SUBUNITS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRITICUM;

TRITICUM AESTIVUM; TRITICUM DICOCCON; TRITICUM TURGIDUM; TRITICUM TURGIDUM SUBSP. DICOCCOIDES;

EID: 84864384759     PISSN: 12341983     EISSN: None     Source Type: Journal    
DOI: 10.1007/s13353-012-0101-5     Document Type: Article

References (46)

1. An XL, Li QY, Yan YM, Xiao YH, Hsam SLK, Zeller FJ (2005) Genetic diversity of European spelt wheat (Triticum aestivum ssp. spelta L. em. Thell.) revealed by glutenin subunit variations at the Glu-1 and Glu-3 loci. Euphytica 146: 193-201.
2. An XL, Zhang Q, Yan YM, Li QY, Zhang YZ, Wang AL, Pei Y, Tian J, Wang H, Hsam SLK, Zeller FJ (2006) Cloning and molecular characterization of three novel LMW-i glutenin subunit genes from cultivated einkorn (Triticum monococcum L.). Theor Appl Genet 113: 383-395.
3. t gene from Aegilops tauschii. Plant Breed 128: 41-45.
4. Anderson OD, Greene FC, Yip RE, Halford NG, Shewry PR, Malpica-Romero JM (1989) Nucleotide sequences of the two high-molecular-weight glutenin genes from the D-genome of a hexaploid bread wheat, Triticum aestivum L. cv Cheyenne. Nucleic Acids Res 17: 461-462.
5. Batley J, Mogg R, Edwards D, O'Sullivan H, Edwards KJ (2003) A high-throughput SnuPE assay for genotyping SNPs in the flanking regions of Zea mays sequence tagged simple sequence repeats. Mol Breed 11: 111-120.
6. Békés F, Gras PW, Gupta RB (1995) The effects of purified cereal polypeptides on the mixing properties of dough. In: Williams YA, Wrigley CW (eds) Proceedings of the 45th Australian cereal chemistry conference: capturing the benefits of research for consumers, Adelaide, Australia, September 1995. Royal Australian Chemical Institute (RACI), Cereal Chemistry Division, pp 92-98.
7. Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS, Jones DT (2005) Protein structure prediction servers at University College London. Nucleic Acids Res 33: W36-W38.
8. Ciaffi M, Lafiandra D, Porceddu E, Benedettelli S (1993) Storage-protein variation in wild emmer wheat (Triticum turgidum ssp. dicoccoides) from Jordan and Turkey. I. Electrophoretic characterization of genotypes. Theor Appl Genet 86: 474-480.
9. D'Ovidio R, Masci S, Porceddu E (1995) Development of a set of oligonucleotide primers specific for genes at the Glu-1 complex loci of wheat. Theor Appl Genet 91: 189-194.
10. Forde J, Malpica J-M, Halford NG, Shewry PR, Anderson OD, Greene FC, Miflin BJ (1985) The nucleotide sequence of a HMW glutenin subunit gene located on chromosome 1A of wheat (Triticum aestivum L.). Nucleic Acids Res 13: 6817-6832.
11. Gao LY, Ma WJ, Chen J, Wang K, Li J, Wang SL, Békés F, Appels R, Yan YM (2010) Characterization and comparative analysis of wheat high molecular weight glutenin subunits by SDS-PAGE, RP-HPLC, HPCE, and MALDI-TOF-MS. J Agric Food Chem 58: 2777-2786.
12. Gianibelli MC, Larroque OR, MacRitchie F, Wrigley CW (2001) Biochemical, genetic, and molecular characterization of wheat glutenin and its component subunits. Cereal Chem 78: 635-646.
13. Halford NG, Forde J, Anderson OD, Greene FC, Shewry PR (1987) The nucleotide and deduced amino acid sequences of an HMW glutenin subunit gene from chromosome 1B of bread wheat (Triticum aestivum L.) and comparison with those of genes from chromosomes 1A and 1D. Theor Appl Genet 75: 117-126.
14. Jiang CX, Pei YH, Zhang YZ, Li XH, Yao DN, Yan YM, Ma WJ, Hsam SLK, Zeller FJ (2008) Molecular cloning and characterization of four novel LMW glutenin subunit genes from Aegilops longissima, Triticum dicoccoides and T. zhukovskyi. Hereditas 145(2): 92-98.
15. Kumarathasan P, Mohottalage S, Goegan P, Vincent R (2005) An optimized protein in-gel digest method for reliable proteome characterization by MALDI-TOF-MS analysis. Anal Biochem 346: 85-89.
16. Li QY, Yan YM, Wang AL, An XL, Zhang YZ, Hsam SLK, Zeller FJ (2006) Detection of HMW glutenin subunit variations among 205 cultivated emmer accessions (Triticum turgidum ssp. dicoccum). Plant Breed 125: 120-124.
17. Li W, Wan Y, Liu Z, Liu K, Liu X, Li B, Li Z, Zhang X, Dong Y, Wang D (2004) Molecular characterization of HMW glutenin subunit allele 1Bx14: further insights into the evolution of Glu-B1-1 alleles in wheat and related species. Theor Appl Genet 109: 1093-1104.
18. Li XH, Wang AL, Xiao Y, Yan YM, He ZH, Appels R, Ma WJ, Hsam SLK, Zeller FJ (2008) Cloning and characterization of a novel low molecular weight glutenin subunit gene at the Glu-A3 locus from wild emmer wheat (Triticum turgidum L. var. dicoccoides). Euphytica 159: 181-190.
19. Li XH, Zhang YZ, Gao LY, Wang AL, Ji KM, He ZH, Appels R, Ma WJ, Yan YM (2007) Molecular cloning, heterologous expression, and phylogenetic analysis of a novel y-type HMW glutenin subunit gene from the G genome of Triticum timopheevi. Genome 50: 1130-1140.
20. Mackie AM, Lagudah ES, Sharp PJ, Lafiandra D (1996) Molecular and biochemical characterisation of HMW glutenin subunits from T. tauschii and the D genome of hexaploid wheat. J Cereal Sci 23: 213-225.
21. McGuffin LJ, Bryson K, Jones DT (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
22. Nevo E, Beiles A (1989) Genetic diversity of wild emmer wheat in Israel and Turkey. Structure, evolution, and application in breeding. Theor Appl Genet 77: 421-455.
23. Nevo E, Gerechter-Amitai ZK, Beiles A (1991) Resistance of wild emmer wheat to stem rust: ecological, pathological and allozyme associations. Euphytica 53: 121-130.
24. Pang B-S, Zhang X-Y (2008) Isolation and molecular characterization of high molecular weight glutenin subunit genes 1Bx13 and 1By16 from hexaploid wheat. J Integr Plant Biol 50: 329-337.
25. Payne PI (1987) Genetics of wheat storage proteins and the effect of allelic variation on bread-making quality. Ann Rev Plant Physiol 38: 141-153.
26. Payne PI, Lawrence GJ (1983) Catalogue of alleles for the complex gene loci, Glu-A1, Glu-B1 and Glu-D1 which code for high-molecular-weight subunits of glutenin in hexaploid wheat. Cereal Res Commun 11: 29-35.
27. Rafalski A (2002) Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5: 94-100.
28. Redaelli R, Pogna NE, Ng PKW (1997) Effects of prolamins encoded by chromosomes 1B and 1D on the rheological properties of dough in near-isogenic lines of bread wheat. Cereal Chem 74: 102-107.
29. Shewry PR, Halford NG, Tatham AS (1992) High molecular weight subunits of wheat glutenin. J Cereal Sci 15: 105-120.
30. Shewry PR, Tatham AS, Barro P, Barcelo P, Lazzeri P (1995) Biotechnology of breadmaking: unraveling and manipulating the multi-protein gluten complex. Biotechnol 13: 1185-1190.
31. Shewry PR, Gilbert SM, Savage AWJ, Tatham AS, Wan Y-F, Belton PS, Wellner N, D'Ovidio R, Békés F, Halford NG (2003) Sequence and properties of HMW subunit 1Bx20 from pasta wheat (Triticum durum) which is associated with poor end use properties. Theor Appl Genet 106: 744-750.
32. Tatham AS, Miflin BJ, Shewry PR (1985) The beta-turn conformation in wheat gluten proteins: relationship to gluten elasticity. Cereal Chem 62: 405-412.
33. Tatham AS, Field JM, Smith SJ, Shewry PR (1987) The conformations of wheat gluten proteins. II. Aggregated gliadins and low molecular weight subunits of glutenin. J Cereal Sci 5: 203-214.
34. Thompson RD, Bartels D, Harberd NP (1985) Nucleotide sequence of a gene from chromosome 1D of wheat encoding a HMW-glutenin subunit. Nucleic Acids Res 13: 6833-6846.
35. r subunits of wheat glutenin. J Cereal Sci 22: 17-19.
36. Tilley KA, Lookhart GL, Hosneney RC, Mawhinney TP (1993) Evidence for glycosylation of the high molecular weight glutenin subunits 2, 7, 8, and 12 from Chinese spring and TAM 105 wheats. Cereal Chem 70: 602-606.
37. Valkoun JJ (2001) Wheat pre-breeding using wild progenitors. Euphytica 119: 17-23.
38. Wan Y, Wang D, Shewry PR, Halford NG (2002) Isolation and characterization of five novel high molecular weight subunit of glutenin genes from Triticum timopheevi and Aegilops cylindrica. Theor Appl Genet 104: 828-839.
39. t genes from Aegilops tauschii and their potential value for wheat quality improvement. Hereditas 149: 41-49.
40. Xu SS, Khan K, Klindworth DL, Faris JD, Nygard G (2004) Chromosomal location of genes for novel glutenin subunits and gliadins in wild emmer wheat (Triticum turgidum L. var. dicoccoides). Theor Appl Genet 108: 1221-1228.
41. Yan YM, Surlan-Momirovic G, Prodanovic S, Zoric D, Liu GT (1999) Capillary zone electrophoresis analysis of gliadin proteins from Chinese and Yugoslav winter wheat cultivars. Euphytica 105: 197-204.
42. Yan YM, Hsam SLK, Yu JZ, Jiang Y, Zeller FJ (2003a) Allelic variation of the HMW glutenin subunits in Aegilops tauschii accessions detected by sodium dodecyl sulphate (SDS-PAGE), acid polyacrylamide gel (A-PAGE) and capillary electrophoresis. Euphytica 130: 377-385.
43. Yan YM, Hsam SLK, Yu JZ, Jiang Y, Ohtsuka I, Zeller FJ (2003b) HMW and LMW glutenin alleles among putative tetraploid and hexaploid European spelt wheat (Triticum spelta L.) progenitors. Theor Appl Genet 107: 1321-1330.
44. Yan YM, Yu JZ, Jiang Y, Hu YK, Cai MH, Hsam SLK, Zeller FJ (2003c) Capillary electrophoresis separation of high molecular weight glutenin subunits in bread wheats (Triticum aestivum L.) and related species with phosphate-based buffers. Electrophoresis 24: 1429-1436.
45. Yan YM, Jiang Y, An XL, Pei YH, Li XH, Zhang YZ, Wang AL, He ZH, Xia XC, Békés F, Ma WJ (2009) Cloning, expression and functional analysis of HMW glutenin subunit 1By8 gene from Italy pasta wheat (Triticum turgidum L. ssp. durum). J Cereal Sci 50: 398-406.
46. t) from Aegilops tauschii. Genome 49: 735-745.