메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Comprehensive microRNA profiling in B-cells of human centenarians by massively parallel sequencing

Author keywords

Aging; Centenarians; Life span; Massively parallel sequencing; MicroRNA

Indexed keywords

MICRORNA; MICRORNA 103; MICRORNA 140; MICRORNA 155; MICRORNA 21; MICRORNA 25; MICRORNA 320; MICRORNA 363; UNCLASSIFIED DRUG;

EID: 84864338208     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-353     Document Type: Article
Times cited : (68)

References (67)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116(2):281-297.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nat Rev Genet 2008, 9(2):102-114.
    • (2008) Nat Rev Genet , vol.9 , Issue.2 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 3
    • 28044455435 scopus 로고    scopus 로고
    • MicroPrimer: the biogenesis and function of microRNA
    • Du T, Zamore PD. microPrimer: the biogenesis and function of microRNA. Development 2005, 132(21):4645-4652.
    • (2005) Development , vol.132 , Issue.21 , pp. 4645-4652
    • Du, T.1    Zamore, P.D.2
  • 4
    • 38349064711 scopus 로고    scopus 로고
    • MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1
    • Tay YM, Tam WL, Ang YS, Gaughwin PM, Yang H, Wang W, Liu R, George J, Ng HH, Perera RJ, et al. MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1. Stem Cells 2008, 26(1):17-29.
    • (2008) Stem Cells , vol.26 , Issue.1 , pp. 17-29
    • Tay, Y.M.1    Tam, W.L.2    Ang, Y.S.3    Gaughwin, P.M.4    Yang, H.5    Wang, W.6    Liu, R.7    George, J.8    Ng, H.H.9    Perera, R.J.10
  • 5
    • 38049030287 scopus 로고    scopus 로고
    • Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock
    • Tili E, Michaille JJ, Cimino A, Costinean S, Dumitru CD, Adair B, Fabbri M, Alder H, Liu CG, Calin GA, et al. Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock. J Immunol 2007, 179(8):5082-5089.
    • (2007) J Immunol , vol.179 , Issue.8 , pp. 5082-5089
    • Tili, E.1    Michaille, J.J.2    Cimino, A.3    Costinean, S.4    Dumitru, C.D.5    Adair, B.6    Fabbri, M.7    Alder, H.8    Liu, C.G.9    Calin, G.A.10
  • 8
    • 29344467120 scopus 로고    scopus 로고
    • A developmental timing microRNA and its target regulate life span in C. elegans
    • Boehm M, Slack F. A developmental timing microRNA and its target regulate life span in C. elegans. Science 2005, 310(5756):1954-1957.
    • (2005) Science , vol.310 , Issue.5756 , pp. 1954-1957
    • Boehm, M.1    Slack, F.2
  • 11
    • 0347755643 scopus 로고    scopus 로고
    • The microRNA Registry
    • Database issue
    • Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res 2004, 32(Database issue):D109-D111.
    • (2004) Nucleic Acids Res , vol.32
    • Griffiths-Jones, S.1
  • 12
    • 69249147045 scopus 로고    scopus 로고
    • Expression profiling of microRNAs by deep sequencing
    • Creighton CJ, Reid JG, Gunaratne PH. Expression profiling of microRNAs by deep sequencing. Brief Bioinform 2009, 10(5):490-497.
    • (2009) Brief Bioinform , vol.10 , Issue.5 , pp. 490-497
    • Creighton, C.J.1    Reid, J.G.2    Gunaratne, P.H.3
  • 15
    • 68949211709 scopus 로고    scopus 로고
    • Genetics of human gene expression: mapping DNA variants that influence gene expression
    • Cheung VG, Spielman RS. Genetics of human gene expression: mapping DNA variants that influence gene expression. Nat Rev Genet 2009, 10(9):595-604.
    • (2009) Nat Rev Genet , vol.10 , Issue.9 , pp. 595-604
    • Cheung, V.G.1    Spielman, R.S.2
  • 17
    • 79956016645 scopus 로고    scopus 로고
    • Impaired IGF1R signaling in cells expressing longevity-associated human IGF1R alleles
    • Tazearslan C, Huang J, Barzilai N, Suh Y. Impaired IGF1R signaling in cells expressing longevity-associated human IGF1R alleles. Aging Cell 2011, 10(3):551-554.
    • (2011) Aging Cell , vol.10 , Issue.3 , pp. 551-554
    • Tazearslan, C.1    Huang, J.2    Barzilai, N.3    Suh, Y.4
  • 19
    • 79952902493 scopus 로고    scopus 로고
    • From expression QTLs to personalized transcriptomics
    • Montgomery SB, Dermitzakis ET. From expression QTLs to personalized transcriptomics. Nat Rev Genet 2011, 12(4):277-282.
    • (2011) Nat Rev Genet , vol.12 , Issue.4 , pp. 277-282
    • Montgomery, S.B.1    Dermitzakis, E.T.2
  • 21
    • 84860849811 scopus 로고    scopus 로고
    • Common Genetic Variation in the 3-BCL11B Gene Desert Is Associated with Carotid-Femoral Pulse Wave Velocity and Excess Cardiovascular Disease Risk: The AortaGen Consortium
    • Mitchell GF, Verwoert GC, Tarasov KV, Isaacs A, Smith AV, Yasmin, Rietzschel ER, Tanaka T, Liu Y, Parsa A, et al. Common Genetic Variation in the 3-BCL11B Gene Desert Is Associated with Carotid-Femoral Pulse Wave Velocity and Excess Cardiovascular Disease Risk: The AortaGen Consortium. Circ Cardiovasc Genet 2011, 5(1).
    • (2011) Circ Cardiovasc Genet , vol.5 , Issue.1
    • Mitchell, G.F.1    Verwoert, G.C.2    Tarasov, K.V.3    Isaacs, A.4    Smith, A.V.5    Yasmin6    Rietzschel, E.R.7    Tanaka, T.8    Liu, Y.9    Parsa, A.10
  • 22
    • 70350683774 scopus 로고    scopus 로고
    • Expression quantitative trait loci detected in cell lines are often present in primary tissues
    • Bullaughey K, Chavarria CI, Coop G, Gilad Y. Expression quantitative trait loci detected in cell lines are often present in primary tissues. Hum Mol Genet 2009, 18(22):4296-4303.
    • (2009) Hum Mol Genet , vol.18 , Issue.22 , pp. 4296-4303
    • Bullaughey, K.1    Chavarria, C.I.2    Coop, G.3    Gilad, Y.4
  • 23
    • 34447505156 scopus 로고    scopus 로고
    • DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
    • Hovatta I, Zapala MA, Broide RS, Schadt EE, Libiger O, Schork NJ, Lockhart DJ, Barlow C. DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies. Genome Biol 2007, 8(2):R25.
    • (2007) Genome Biol , vol.8 , Issue.2
    • Hovatta, I.1    Zapala, M.A.2    Broide, R.S.3    Schadt, E.E.4    Libiger, O.5    Schork, N.J.6    Lockhart, D.J.7    Barlow, C.8
  • 26
  • 30
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31(13):3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 31
    • 77957312307 scopus 로고    scopus 로고
    • Dynamic isomiR regulation in Drosophila development
    • Fernandez-Valverde SL, Taft RJ, Mattick JS. Dynamic isomiR regulation in Drosophila development. RNA 2010, 16(10):1881-1888.
    • (2010) RNA , vol.16 , Issue.10 , pp. 1881-1888
    • Fernandez-Valverde, S.L.1    Taft, R.J.2    Mattick, J.S.3
  • 32
    • 77951972792 scopus 로고    scopus 로고
    • Regulation of MicroRNA Biogenesis: A miRiad of mechanisms
    • Davis BN, Hata A. Regulation of MicroRNA Biogenesis: A miRiad of mechanisms. Cell Commun Signal 2009, 7:18.
    • (2009) Cell Commun Signal , vol.7 , pp. 18
    • Davis, B.N.1    Hata, A.2
  • 35
    • 0037440150 scopus 로고    scopus 로고
    • IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments
    • Romualdi C, Bortoluzzi S, D'Alessi F, Danieli GA. IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol Genomics 2003, 12(2):159-162.
    • (2003) Physiol Genomics , vol.12 , Issue.2 , pp. 159-162
    • Romualdi, C.1    Bortoluzzi, S.2    D'Alessi, F.3    Danieli, G.A.4
  • 37
    • 77950600443 scopus 로고    scopus 로고
    • MicroRNA-dependent regulation of DNA methyltransferase-1 and tumor suppressor gene expression by interleukin-6 in human malignant cholangiocytes
    • Braconi C, Huang N, Patel T. MicroRNA-dependent regulation of DNA methyltransferase-1 and tumor suppressor gene expression by interleukin-6 in human malignant cholangiocytes. Hepatology 2010, 51(3):881-890.
    • (2010) Hepatology , vol.51 , Issue.3 , pp. 881-890
    • Braconi, C.1    Huang, N.2    Patel, T.3
  • 39
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120(1):15-20.
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 44
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth T, Speed TP. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 2004, 20(9):1464-1465.
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 47
  • 50
    • 79957558166 scopus 로고    scopus 로고
    • Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence
    • Dhahbi JM, Atamna H, Boffelli D, Magis W, Spindler SR, Martin DI. Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence. PLoS One 2011, 6(5):e20509.
    • (2011) PLoS One , vol.6 , Issue.5
    • Dhahbi, J.M.1    Atamna, H.2    Boffelli, D.3    Magis, W.4    Spindler, S.R.5    Martin, D.I.6
  • 51
    • 84857058409 scopus 로고    scopus 로고
    • Functional relevance of miRNA sequences in human disease
    • Bhayani MK, Calin GA, Lai SY. Functional relevance of miRNA sequences in human disease. Mutat Res 2012, 731(1-2):14-19.
    • (2012) Mutat Res , vol.731 , Issue.1-2 , pp. 14-19
    • Bhayani, M.K.1    Calin, G.A.2    Lai, S.Y.3
  • 52
    • 80053210307 scopus 로고    scopus 로고
    • Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
    • Kato M, Chen X, Inukai S, Zhao H, Slack F. Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans. RNA 2011, 17(10):1804-1820.
    • (2011) RNA , vol.17 , Issue.10 , pp. 1804-1820
    • Kato, M.1    Chen, X.2    Inukai, S.3    Zhao, H.4    Slack, F.5
  • 53
    • 77951092028 scopus 로고    scopus 로고
    • Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3 ' untranslated region
    • Wu S, Huang S, Ding J, Zhao Y, Liang L, Liu T, Zhan R, He X. Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3 ' untranslated region. Oncogene 2010, 29(15):2302-2308.
    • (2010) Oncogene , vol.29 , Issue.15 , pp. 2302-2308
    • Wu, S.1    Huang, S.2    Ding, J.3    Zhao, Y.4    Liang, L.5    Liu, T.6    Zhan, R.7    He, X.8
  • 54
    • 78650510609 scopus 로고    scopus 로고
    • MTOR: from growth signal integration to cancer, diabetes and ageing
    • Zoncu R, Efeyan A, Sabatini DM. mTOR: from growth signal integration to cancer, diabetes and ageing. Nature Rev Mol Cell Biol 2011, 12(1):21-35.
    • (2011) Nature Rev Mol Cell Biol , vol.12 , Issue.1 , pp. 21-35
    • Zoncu, R.1    Efeyan, A.2    Sabatini, D.M.3
  • 55
    • 0027482067 scopus 로고
    • Longevity Is Moderately Heritable in a Sample of Danish Twins Born 1870-1880
    • Mcgue M, Vaupel JW, Holm N, Harvald B. Longevity Is Moderately Heritable in a Sample of Danish Twins Born 1870-1880. J Gerontol 1993, 48(6):B237-B244.
    • (1993) J Gerontol , vol.48 , Issue.6
    • Mcgue, M.1    Vaupel, J.W.2    Holm, N.3    Harvald, B.4
  • 56
    • 0030062815 scopus 로고    scopus 로고
    • The heritability of human longevity: A population-based study of 2872 Danish twin pairs born 1870-1900
    • Herskind AM, McGue M, Holm NV, Sorensen TIA, Harvald B, Vaupel JW. The heritability of human longevity: A population-based study of 2872 Danish twin pairs born 1870-1900. Human Genet 1996, 97(3):319-323.
    • (1996) Human Genet , vol.97 , Issue.3 , pp. 319-323
    • Herskind, A.M.1    McGue, M.2    Holm, N.V.3    Sorensen, T.I.A.4    Harvald, B.5    Vaupel, J.W.6
  • 59
    • 34547617380 scopus 로고    scopus 로고
    • Genetic determinants of human health span and life span: progress and new opportunities
    • Martin GM, Bergman A, Barzilai N. Genetic determinants of human health span and life span: progress and new opportunities. PLoS Genet 2007, 3(7):e125.
    • (2007) PLoS Genet , vol.3 , Issue.7
    • Martin, G.M.1    Bergman, A.2    Barzilai, N.3
  • 61
    • 51349103571 scopus 로고    scopus 로고
    • Sequence Relationships among C-elegans, D-melanogaster and Human microRNAs Highlight the Extensive Conservation of microRNAs in Biology
    • Ibanez-Ventoso C, Vora M, Driscoll M. Sequence Relationships among C-elegans, D-melanogaster and Human microRNAs Highlight the Extensive Conservation of microRNAs in Biology. PLoS One 2008, 3:7.
    • (2008) PLoS One , vol.3 , pp. 7
    • Ibanez-Ventoso, C.1    Vora, M.2    Driscoll, M.3
  • 62
    • 68649121427 scopus 로고    scopus 로고
    • MicroRNA Regulation and its Biological Significance in Personalized Medicine and Aging
    • Wang E. MicroRNA Regulation and its Biological Significance in Personalized Medicine and Aging. Current Genomics 2009, 10(3):143-143.
    • (2009) Current Genomics , vol.10 , Issue.3 , pp. 143-143
    • Wang, E.1
  • 64
    • 65249170333 scopus 로고    scopus 로고
    • Genetic analysis of radiation-induced changes in human gene expression
    • Smirnov DA, Morley M, Shin E, Spielman RS, Cheung VG. Genetic analysis of radiation-induced changes in human gene expression. Nature 2009, 459(7246):587-591.
    • (2009) Nature , vol.459 , Issue.7246 , pp. 587-591
    • Smirnov, D.A.1    Morley, M.2    Shin, E.3    Spielman, R.S.4    Cheung, V.G.5
  • 66
    • 77951226627 scopus 로고    scopus 로고
    • The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    • Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res 2009, 38(6):1767-1771.
    • (2009) Nucleic Acids Res , vol.38 , Issue.6 , pp. 1767-1771
    • Cock, P.J.1    Fields, C.J.2    Goto, N.3    Heuer, M.L.4    Rice, P.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.