Erratum: Evolution of the B7 family: Co-evolution of B7H6 and Nkp30, identification of a new B7 family member, B7H7, and of B7's historical relationship with the MHC (Immunogenetics DOI: 10.1007/s00251-012-0616-2);Evolution of the B7 family: Co-evolution of B7H6 and NKp30, identification of a new B7 family member, B7H7, and of B7's historical relationship with the MHC

Immunogenetics

Volumn 64, Issue 8, 2012, Pages 571-590

  Flajnik, Martin F ^a   Tlapakova, Tereza ^b   Criscitiello, Michael F ^c   Krylov, Vladimir ^b   Ohta, Yuko ^a  

^a UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^b CHARLES UNIVERSITY   (Czech Republic)

^c TEXAS A AND M UNIVERSITY   (United States)

Author keywords

B7 family; Evolution; Genetic linkage; MHC; Natural killer receptors; Xenopus

Indexed keywords

B7 ANTIGEN; B7H6 ANTIGEN; B7H7 ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN; NATURAL KILLER CELL RECEPTOR; NATURAL KILLER CELL RECEPTOR NKP30; UNCLASSIFIED DRUG;

ARTICLE; GENE; GENE CLUSTER; GENE EXPRESSION; GENE IDENTIFICATION; GENE LOCUS; GENOME; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; UNINDEXED SEQUENCE; XENOPUS;

CHONDRICHTHYES; MAMMALIA; RATTUS; VERTEBRATA;

EID: 84864277995     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-012-0622-4     Document Type: Erratum

References (69)

1. Allcock RJ, Barrow AD, Forbes S, Beck S, Trowsdale J (2003) The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44. Eur J Immunol 33:567-577 (Pubitemid 36267623)
2. Baratin M, Vivier E (2010) B7-H6: a novel alert signal for NK cells. Med Sci (Paris) 26:119-120
3. Bartl S, Baltimore D, Weissman IL (1994) Molecular evolution of the vertebrate immune system. Proc Natl Acad Sci USA 91:10769-10770 (Pubitemid 24349566)
4. Bartl S, Baish MA, Flajnik MF, Ohta Y (1997) Identification of class I genes in cartilaginous fish, the most ancient group of vertebrates displaying an adaptive immune response. J Immunol 159:6097-6104 (Pubitemid 127471548)
5. Belov K, Sanderson CE, Deakin JE, Wong ES, Assange D, McColl KA, Gout A, de Bono B, Barrow AD, Speed TP, Trowsdale J, Papenfuss AT (2007) Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system. Genome Res 17:982-991 (Pubitemid 47026345)
6. Brandt CS, Baratin M, Yi EC, Kennedy J, Gao Z, Fox B, Haldeman B, Ostrander CD, Kaifu T, Chabannon C, Moretta A, West R, Xu W, Vivier E, Levin SD (2009) The B7 family member B7-H6 is a tumor cell ligand for the activating natural killer cell receptor NKp30 in humans. J Exp Med 206:1495-1503
7. Callahan MK, Wolchok JD, Allison JP (2010) Anti-CTLA-4 antibody therapy: immune monitoring during clinical development of a novel immunotherapy. Semin Oncol 37:473-484
8. Cantoni C, Bottino C, Vitale M, Pessino A, Augugliaro R, Malaspina A, Parolini S, Moretta L, Moretta A, Biassoni R (1999) NKp44, a triggering receptor involved in tumor cell lysis by activated human natural killer cells, is a novel member of the immunoglobulin superfamily J Exp Med 189:787-796
9. Collette Y, Gilles A, Pontarotti P, Olive D (2003) A co-evolution perspective of the TNFSF and TNFRSF families in the immune system. Trends Immunol 24:387-394 (Pubitemid 36830966)
10. Collins M, Ling V, Carreno BM (2005) The B7 family of immune-regulatory ligands. Genome Biol 6:223
11. Courtet M, Flajnik M, Du Pasquier L (2001) Major histocompatibility complex and immunoglobulin loci visualized by in situ hybridization onXenopus chromosomes. Dev Comp Immunol 25:149-157
12. Delahaye NF, Rusakiewicz S, Martins I, Menard C, Roux S, Lyonnet L, Paul P, Sarabi M, Chaput N, Semeraro M, Minard-Colin V, Poirier-Colame V, Chaba K, Flament C, Baud V, Authier H, Kerdine-Romer S, Pallardy M, Cremer I, Peaudecerf L, Rocha B, Valteau-Couanet D, Gutierrez JC, Nunes JA, Commo F, Bonvalot S, Ibrahim N, Terrier P, Opolon P, Bottino C, Moretta A, Tavernier J, Rihet P, Coindre JM, Blay JY, Isambert N, Emile JF, Vivier E, Lecesne A, Kroemer G, Zitvogel L (2011) Alternatively spliced NKp30 isoforms affect the prognosis of gastrointestinal stromal tumors. Nat Med 17:700-707
13. Dinesh RK, Hahn BH, Singh RP (2010) PD-1, gender, and autoimmunity. Autoimmun Rev 9:583-587
14. Du Pasquier L (2000) Relationships among the genes encoding MHC molecules and the specific antigen receptors. In: MHC Evolution, Structure and Function. Springer-Verlag, Tokyo, pp 53-65
15. Du Pasquier L (2002) Several MHC-linked Ig superfamily genes have features of ancestral antigen-specific receptor genes. Curr Top Microbiol Immunol 266:57-71 (Pubitemid 34297389)
16. Du Pasquier L (2009) Fish 'n' TRIMs. J Biol 8:50
17. Du Pasquier L, Zucchetti I, De Santis R (2004) Immunoglobulin super-family receptors in protochordates: before RAG time. Immunol Rev 198:233-248 (Pubitemid 38406947)
18. Fahrer AM, Bazan JF, Papathanasiou P, Nelms KA, Goodnow CC (2001) A genomic view of immunology. Nature 409:836-838 (Pubitemid 32165337)
19. Flajnik MF, Kasahara M (2010) Origin and evolution of the adaptive immune system: genetic events and selective pressures. Nat Rev Genet 11:47-59
20. Flajnik MF, Kasahara M, Shum BP, Salter-Cid L, Taylor E, Du Pasquier L (1993) A novel type of class I gene organization in vertebrates: a large family of non-MHC-linked class I genes is expressed at the RNA level in the amphibian Xenopus. EMBO J 12:4385-4396 (Pubitemid 23302053)
21. Greenwald RJ, Freeman GJ, Sharpe AH (2005) The B7 family revisited. Annu Rev Immunol 23:515-548 (Pubitemid 40563179)
22. Hall TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acids Symp Ser 4:95-98, Ref Type: Journal (Full)
23. Hansen JD, Du Pasquier L, Lefranc MP, Lopez V, Benmansour A, Boudinot P (2009) The B7 family of immunoregulatory receptors: a comparative and evolutionary perspective. Mol Immunol 46:457-472
24. Haruta C, Suzuki T, Kasahara M (2006) Variable domains in hagfish: NICIR is a polymorphic multigene family expressed preferentially in leukocytes and is related to lamprey TCR-like. Immunogenetics 58:216-225
25. Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS (2010) The genome of the Western clawed frog Xenopus tropicalis. Science 328:633-636
26. Henry J, Miller MM, Pontarotti P (1999) Structure and evolution of the extended B7 family. Immunol Today 20:285-288 (Pubitemid 29258166)
27. Hollyoake M, Campbell RD, Aguado B (2005) NKp30 (NCR3) is a pseudogene in 12 inbred and wild mouse strains, but an expressed gene in Mus caroli. Mol Biol Evol 22:1661-1672 (Pubitemid 41373577)
28. Joyce MG, Tran P, Zhuravleva MA, Jaw J, Colonna M, Sun PD (2011) Crystal structure of human natural cytotoxicity receptor NKp30 and identification of its ligand binding site. Proc Natl Acad Sci USA 108:6223-6228
29. Kaifu T, Escaliere B, Gastinel LN, Vivier E, Baratin M (2011) B7-H6/NKp30 interaction: a mechanism of alerting NK cells against tumors. Cell Mol Life Sci 68:3531-3539
30. Kaufman J, Milne S, Gobel TW, Walker BA, Jacob JP, Auffray C, Zoorob R, Beck S (1999) The chicken B locus is a minimal essential major histocompatibility complex. Nature 401:923-925
31. Keir ME, Butte MJ, Freeman GJ, Sharpe AH (2008) PD-1 and its ligands in tolerance and immunity. Annu Rev Immunol 26:677-704 (Pubitemid 351600389)
32. Khokha MK, Krylov V, Reilly MJ, Gall JG, Bhattacharya D, Cheung CY, Kaufman S, Lam DK, Macha J, Ngo C, Prakash N, Schmidt P, Tlapakova T, Trivedi T, Tumova L, bu-Daya A, Geach T, Vendrell E, Ironfield H, Sinzelle L, Sater AK, Wells DE, Harland RM, Zimmerman LB (2009) Rapid gynogenetic mapping of Xen-opus tropicalis mutations to chromosomes. Dev Dyn 238:1398-1406
33. Kobel HR, Du Pasquier L (1986) Genetics of polyploid Xenopus. Trends Genet 12:310-314, Ref Type: Journal (Full)
34. Kock H, Fischer U (2008) A novel immunoglobulin-like transcript from rainbow trout with two Ig-like domains and two isoforms. Mol Immunol 45:1612-1622 (Pubitemid 351227406)
35. Krylov V, Tlapakova T, Macha J (2007) Localization of the single copy gene Mdh2 on Xenopus tropicalis chromosomes by FISH-TSA. Cytogenet Genome Res 116:110-112 (Pubitemid 46197139)
36. Li Y, Wang Q, Mariuzza RA (2011) Structure of the human activating natural cytotoxicity receptor NKp30 bound to its tumor cell ligand B7-H6. J Exp Med 208:703-714
37. Linsley PS, Peach R, Gladstone P, Bajorath J (1994) Extending the B7 (CD80) gene family. Protein Sci 3:1341-1343 (Pubitemid 24278215)
38. Loos M, Hedderich DM, Friess H, Kleeff J (2010) B7-h3 and its role in antitumor immunity. Clin Dev Immunol 2010:683875
39. Macha J, Tlapakova T, Krylov V, Kopsky V (2003) Xstir polymorphism and absence of sex linkage in Xenopus laevis ME2 gene. Folia Biol (Praha) 49:115-117 (Pubitemid 36818241)
40. Mager DL, Hunter DG, Schertzer M, Freeman JD (1999) Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3). Genomics 59:255-263 (Pubitemid 29406906)
41. Meyer A, Van de PY (2005) From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays 27:937-945 (Pubitemid 41415948)
42. Ohno S (1970) In: Evolution by gene duplication. Springer, New York
43. Ohta Y, Powis SJ, Coadwell WJ, Haliniewski DE, Liu Y, Li H, Flajnik MF (1999) Identification and genetic mapping of Xenopus TAP2 genes. Immunogenetics 49:171-182 (Pubitemid 29054576)
44. Ohta Y, Goetz W, Hossain MZ, Nonaka M, Flajnik MF (2006) Ancestral organization of the MHC revealed in the amphibian Xenopus. J Immunol 176:3674-3685 (Pubitemid 43364014)
45. Ohta Y, Shiina T, Lohr RL, Hosomichi K, Pollin TI, Heist EJ, Suzuki S, Inoko H, Flajnik MF (2011) Primordial linkage of "2-micro-globulin to the MHC. J Immunol 186:3563-3571
46. Ostergaard AE, Martin SA, Wang T, Stet RJ, Secombes CJ (2009) Rainbow trout (Oncorhynchus mykiss) possess multiple novel immunoglobulin-like transcripts containing either an ITAM or ITIMs. Dev Comp Immunol 33:525-532
47. Page RD (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
48. Pende D, Parolini S, Pessino A, Sivori S, Augugliaro R, Morelli L, Marcenaro E, Accame L, Malaspina A, Biassoni R, Bottino C, Moretta L, Moretta A (1999) Identification and molecular characterization of NKp30, a novel triggering receptor involved in natural cytotoxicity mediated by human natural killer cells. J Exp Med 190:1505-1516
49. Postlethwait JH (2007) The zebrafish genome in context: ohnologs gone missing. J Exp Zool B Mol Dev Evol 308:563-577 (Pubitemid 47528915)
50. Postlethwait J, Amores A, Cresko W, Singer A, Yan YL (2004) Sub-function partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 20:481-490 (Pubitemid 39201068)
51. Reeves RH, Patch D, Sharpe AH, Borriello F, Freeman GJ, Edelhoff S, Disteche C (1997) The costimulatory genes Cd80 and Cd86 are linked on mouse chromosome 16 and human chromosome 3. Mamm Genome 8:581-582 (Pubitemid 28060645)
52. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
53. Selvakumar A, Mohanraj BK, Eddy RL, Shows TB, White PC, Dupont B (1992) Genomic organization and chromosomal location of the human gene encoding the B-lymphocyte activation antigen B7. Immunogenetics 36:175-181
54. Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Belle R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Geneviere AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallbook F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G,Branno M,Brown ER, CavalieriV, DubocV, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Rottinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R (2006) The genome of the sea urchin Strongylocentrotus purpura-tus. Science 314:941-952 (Pubitemid 44749930)
55. Steinberger P, Majdic O, Derdak SV, Pfistershammer K, Kirch-berger S, Klauser C, Zlabinger G, Pickl WF, Stockl J, Knapp W (2004) Molecular characterization of human 4Ig-B7-H3, a member of the B7 family with four Ig-like domains. J Immunol 172:2352-2359 (Pubitemid 38182383)
56. Stet RJ, Hermsen T, Westphal AH, Jukes J, Engelsma M, Lidy Verburg-van Kemenade BM, Dortmans J, Aveiro J, Savelkoul HF (2005) Novel immunoglobulin-like transcripts in teleost fish encode polymorphic receptors with cytoplasmic ITAM or ITIM and a new structural Ig domain similar to the natural cytotoxicity receptor NKp44. Immunogenetics 57:77-89 (Pubitemid 40591248)
57. Stewart R, Ohta Y, Minter RR, Gibbons T, Horton TL, Ritchie P, Horton JD, Flajnik MF, Watson MD (2005) Cloning and characterization of Xenopus beta2-microglobulin. Dev Comp Immunol 29:723-732
58. Sun M, Richards S, Prasad DV, Mai XM, Rudensky A, Dong C (2002) Characterization of mouse and human B7-H3 genes. J Immunol 168:6294-6297 (Pubitemid 34620050)
59. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
60. Thompson CB (1995) New insights into V(D)J recombination and its role in the evolution of the immune system. Immunity 3:531-539
61. Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S (2007) Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol 5:e101
62. Vogel G (1999) Frog is a prince of a new model organism. Science 285:25
63. Wang L, Rubinstein R, Lines JL, Wasiuk A, Ahonen C, Guo Y, Lu LF, Gondek D, Wang Y, Fava RA, Fiser A, Almo S, Noelle RJ (2011) VISTA, a novel mouse Ig superfamily ligand that negatively regulates T cell responses. J Exp Med 208:577-592
64. Wells DE, Gutierrez L, Xu Z, Krylov V, Macha J, Blankenburg KP, Hitchens M, Bellot LJ, Spivey M, Stemple DL, Kowis A, Ye Y, Pasternak S, Owen J, Tran T, Slavikova R, Tumova L, Tlapakova T, Seifertova E, Scherer SE, Sater AK (2011) A genetic map of Xenopus tropicalis. Dev Biol 354:1-8
65. Williams AF, Barclay AN (1988) The immunoglobulin superfamily-domains for cell surface recognition. Annu Rev Immunol 6:381-405 (Pubitemid 19141589)
66. Yoder JA, Litman GW (2011) The phylogenetic origins of natural killer receptors and recognition: relationships, possibilities, and realities. Immunogenetics 63:123-141
67. Zhang YA, Hikima J, Li J, LaPatra SE, Luo YP, Sunyer JO (2009) Conservation of structural and functional features in a primordial CD80/86 molecule from rainbow trout (Oncorhynchus mykiss), a primitive teleost fish. J Immunol 183:83-96
68. Zou W, Chen L (2008) Inhibitory B7-family molecules in the tumour microenvironment. Nat Rev Immunol 8:467-477 (Pubitemid 351733418)
69. Zucchetti I, De SR, Grusea S, Pontarotti P, Du Pasquier L (2009) Origin and evolution of the vertebrate leukocyte receptors: the lesson from tunicates. Immunogenetics 61:463-481