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Volumn 34, Issue 3, 2012, Pages 321-327

Incorporating heuristic information into ant colony optimization for epistasis detection

Author keywords

Ant colony optimization; Epistasis detection; Genome wide association study; Heuristic information; Single nucleotide polymorphisms

Indexed keywords

ALGORITHM; ANT; ANTEPISEEKER; ANTMINER; ARTICLE; BIOLOGY; CHI SQUARE TEST; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; EPIMODE; EPISTASIS; GENETIC MODEL; NONHUMAN; ORGANISM COLONY; PHENOTYPE; RETINA MACULA AGE RELATED DEGENERATION; SENSITIVITY ANALYSIS; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; TEAM;

EID: 84864146891     PISSN: 19769571     EISSN: 20929293     Source Type: Journal    
DOI: 10.1007/s13258-012-0003-2     Document Type: Article
Times cited : (28)

References (31)
  • 1
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • DOI 10.1038/nrg1916, PII NRG1916
    • Balding DJ (2006) A tutorial on statistical methods for population association studies. Nat. Rev. Genet. 7: 781-791. (Pubitemid 44413222)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.10 , pp. 781-791
    • Balding, D.J.1
  • 2
    • 0035257236 scopus 로고    scopus 로고
    • Association study designs for complex diseases
    • DOI 10.1038/35052543
    • Cardon LR and Bell JI (2001) Association study designs for complex diseases. Nat. Rev. Genet. 2: 91-99. (Pubitemid 33674000)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.2 , pp. 91-99
    • Cardon, L.R.1    Bell, J.I.2
  • 3
    • 79952302462 scopus 로고    scopus 로고
    • Ant colony optimisation to identify genetic variant association with type 2 diabetes
    • Christmas J, Keedwell E and Frayling TM (2010) Ant colony optimisation to identify genetic variant association with type 2 diabetes. Inform. Sciences 181: 1609-1622.
    • (2010) Inform. Sciences , vol.181 , pp. 1609-1622
    • Christmas, J.1    Keedwell, E.2    Frayling, T.M.3
  • 4
    • 4344659001 scopus 로고    scopus 로고
    • Detecting epistatic interactions contributing to quantitative traits
    • DOI 10.1002/gepi.20006
    • Culverhouse R, Klein T and Shannon W (2004) Detecting epistatic interactions contributing to quantitative traits. Genet. Epidemiol. 27: 141-152. (Pubitemid 39121794)
    • (2004) Genetic Epidemiology , vol.27 , Issue.2 , pp. 141-152
    • Culverhouse, R.1    Klein, T.2    Shannon, W.3
  • 5
    • 38049078025 scopus 로고    scopus 로고
    • Swarm intelligence algorithms in bioinformatics
    • Das S, Abraham A and Konar A (2008) Swarm intelligence algorithms in bioinformatics. Stud. Comp. Intell. 94: 113-147.
    • (2008) Stud. Comp. Intell. , vol.94 , pp. 113-147
    • Das, S.1    Abraham, A.2    Konar, A.3
  • 6
    • 79952035012 scopus 로고    scopus 로고
    • A block-based evolutionary optimization strategy to investigate gene-gene interactions in genetic association studies
    • Fontanarosa J and Dai Y (2010) A block-based evolutionary optimization strategy to investigate gene-gene interactions in genetic association studies. IEEE Internat. Confer. Bioinform. Biomed. Workshop: 330-335.
    • (2010) IEEE Internat. Confer. Bioinform. Biomed. Workshop , pp. 330-335
    • Fontanarosa, J.1    Dai, Y.2
  • 7
    • 0030333453 scopus 로고    scopus 로고
    • Who's afraid of epistasis?
    • Frankel WN and Schork NJ (1996) Who's afraid of epistasis? Nat. Genet. 14: 371-373.
    • (1996) Nat. Genet. , vol.14 , pp. 371-373
    • Frankel, W.N.1    Schork, N.J.2
  • 8
    • 79959928429 scopus 로고    scopus 로고
    • An analysis of new expert knowledge scaling methods for biologically inspired computing
    • Gilmore J, Greene C, Andrews P, Kiralis J and Moore J (2011) An Analysis of New Expert Knowledge Scaling Methods for Biologically Inspired Computing. Lect. Notes Comput. Sci. 5778: 286-293.
    • (2011) Lect. Notes Comput. Sci. , vol.5778 , pp. 286-293
    • Gilmore, J.1    Greene, C.2    Andrews, P.3    Kiralis, J.4    Moore, J.5
  • 9
    • 67650679630 scopus 로고    scopus 로고
    • Optimal use of expert knowledge in ant colony optimization for the analysis of epistasis in human disease
    • Greene C, Gilmore J, Kiralis J, Andrews P and Moore J (2009a) Optimal use of expert knowledge in ant colony optimization for the analysis of epistasis in human disease. Lect. Notes Comput. Sci. 5483: 92-103.
    • (2009) Lect. Notes Comput. Sci. , vol.5483 , pp. 92-103
    • Greene, C.1    Gilmore, J.2    Kiralis, J.3    Andrews, P.4    Moore, J.5
  • 10
    • 69449088874 scopus 로고    scopus 로고
    • Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions
    • Greene CS, Penrod NM, Kiralis J and Moore JH (2009b) Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions. BioData Min. 2: 5.
    • (2009) BioData Min , vol.2 , pp. 5
    • Greene, C.S.1    Penrod, N.M.2    Kiralis, J.3    Moore, J.H.4
  • 11
    • 56449121529 scopus 로고    scopus 로고
    • Ant colony optimization for genome-wide genetic analysis
    • Greene CS, White BC and Moore JH (2008) Ant Colony Optimization for Genome-Wide Genetic Analysis. Lect Notes Comput. Sci. 5217: 37-47.
    • (2008) Lect Notes Comput. Sci. , vol.5217 , pp. 37-47
    • Greene, C.S.1    White, B.C.2    Moore, J.H.3
  • 12
    • 60849093174 scopus 로고    scopus 로고
    • A random Forest approach to the detection of epistatic interactions in case-control studies
    • Jiang R, Tang W, Wu X and Fu W (2009) A random forest approach to the detection of epistatic interactions in case-control studies. BMC Bioinformatics 10 Suppl 1: S65.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 1
    • Jiang, R.1    Tang, W.2    Wu, X.3    Fu, W.4
  • 14
    • 0033940280 scopus 로고    scopus 로고
    • A complete enumeration and classification of two-locus disease models
    • Li W and Reich J (2000) A complete enumeration and classification of two-locus disease models. Hum. Hered. 50: 334-349. (Pubitemid 30481329)
    • (2000) Human Heredity , vol.50 , Issue.6 , pp. 334-349
    • Li, W.1    Reich, J.2
  • 15
    • 55549147191 scopus 로고    scopus 로고
    • Personal genomes: The case of the missing heri-tability
    • Maher B (2008) Personal genomes: The case of the missing heri-tability. Nature 456: 18-21.
    • (2008) Nature , vol.456 , pp. 18-21
    • Maher, B.1
  • 16
    • 77949497074 scopus 로고    scopus 로고
    • Bioinformatics challenges for genome-wide association studies
    • Moore JH, Asselbergs FW and Williams SM (2010) Bioinformatics challenges for genome-wide association studies. Bioinformatics 26: 445-455.
    • (2010) Bioinformatics , vol.26 , pp. 445-455
    • Moore, J.H.1    Asselbergs, F.W.2    Williams, S.M.3
  • 17
    • 81455132704 scopus 로고    scopus 로고
    • Disease liability prediction from large scale genotyping data using classifiers with a reject option
    • Quevedo J, Bahamonde A, Prez-Enciso M and Luaces O (2011) Disease liability prediction from large scale genotyping data using classifiers with a reject option. IEEE/ACM T. Comput. Bi. 9: 88-97.
    • (2011) IEEE/ACM T. Comput. Bi. , vol.9 , pp. 88-97
    • Quevedo, J.1    Bahamonde, A.2    Prez-Enciso, M.3    Luaces, O.4
  • 18
    • 78651518503 scopus 로고    scopus 로고
    • Ant colony algorithm for analysis of gene interaction in high-dimensional association data
    • Rekaya R and Robbins K (2009) Ant colony algorithm for analysis of gene interaction in high-dimensional association data. Rev. Bras. Zootecn. 38: 93-97.
    • (2009) Rev. Bras. Zootecn. , vol.38 , pp. 93-97
    • Rekaya, R.1    Robbins, K.2
  • 19
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N and Merikangas K (1996) The future of genetic studies of complex human diseases. Science 273: 1516-1517. (Pubitemid 26301653)
    • (1996) Science , vol.273 , Issue.5281 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 20
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • DOI 10.1086/321276
    • Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Parl FF and Moore JH (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet. 69: 138-147. (Pubitemid 32614026)
    • (2001) American Journal of Human Genetics , vol.69 , Issue.1 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7
  • 21
  • 22
    • 77957306554 scopus 로고    scopus 로고
    • Systematic removal of outliers to reduce heterogeneity in case-control association studies
    • Shen Y, Liu Z and Ott J (2010) Systematic removal of outliers to reduce heterogeneity in case-control association studies. Hum. Hered. 70: 227-231.
    • (2010) Hum. Hered. , vol.70 , pp. 227-231
    • Shen, Y.1    Liu, Z.2    Ott, J.3
  • 23
    • 66649108315 scopus 로고    scopus 로고
    • Epistatic module detection for case-control studies: A bayesian model with a gibbs sampling strategy
    • Tang W, Wu X, Jiang R and Li Y (2009) Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. PLoS Genet. 5: e1000464.
    • (2009) PLoS Genet , vol.5
    • Tang, W.1    Wu, X.2    Jiang, R.3    Li, Y.4
  • 24
    • 77957764867 scopus 로고    scopus 로고
    • Detecting two-locus associations allowing for interactions in genome-wide association studies
    • Wan X, Yang C, Yang Q, Xue H, Tang NL and Yu W (2010) Detecting two-locus associations allowing for interactions in genome-wide association studies. Bioinformatics 26: 2517-2525.
    • (2010) Bioinformatics , vol.26 , pp. 2517-2525
    • Wan, X.1    Yang, C.2    Yang, Q.3    Xue, H.4    Tang, N.L.5    Yu, W.6
  • 26
    • 77953271464 scopus 로고    scopus 로고
    • Antepiseeker: Detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm
    • Wang Y, Liu X, Robbins K and Rekaya R (2010) AntEpiSeeker: detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm. BMC Res. Notes 3: 117.
    • (2010) BMC Res. Notes , vol.3 , pp. 117
    • Wang, Y.1    Liu, X.2    Robbins, K.3    Rekaya, R.4
  • 27
    • 79951564296 scopus 로고    scopus 로고
    • Identification of a combination of snps associated with graves' disease using swarm intelligence
    • Wei B, Peng Q, Zhang Q and Li C (2011) Identification of a combination of SNPs associated with Graves' disease using swarm intelligence. Sci. China Life Sci. 54: 139-145.
    • (2011) Sci. China Life Sci. , vol.54 , pp. 139-145
    • Wei, B.1    Peng, Q.2    Zhang, Q.3    Li, C.4
  • 28
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • WTCCC
    • WTCCC (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447: 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 29
    • 79954556539 scopus 로고    scopus 로고
    • Mutual information and linkage disequilibrium based SNP association study by grouping case-control
    • Yuan X, Zhang J and Wang Y (2011) Mutual information and linkage disequilibrium based SNP association study by grouping case-control. Genes Genom. 33: 65-73.
    • (2011) Genes Genom. , vol.33 , pp. 65-73
    • Yuan, X.1    Zhang, J.2    Wang, Y.3
  • 30
    • 77954182718 scopus 로고    scopus 로고
    • TEAM: Efficient two-locus epistasis tests in human genome-wide association study
    • Zhang X, Huang S, Zou F and Wang W (2010) TEAM: efficient two-locus epistasis tests in human genome-wide association study. Bioinformatics 26: 217-227.
    • (2010) Bioinformatics , vol.26 , pp. 217-227
    • Zhang, X.1    Huang, S.2    Zou, F.3    Wang, W.4
  • 31
    • 34548352849 scopus 로고    scopus 로고
    • Bayesian inference of epistatic interactions in case-control studies
    • DOI 10.1038/ng2110, PII NG2110
    • Zhang Y and Liu JS (2007) Bayesian inference of epistatic interactions in case-control studies. Nat. Genet. 39: 1167-1173. (Pubitemid 47340656)
    • (2007) Nature Genetics , vol.39 , Issue.9 , pp. 1167-1173
    • Zhang, Y.1    Liu, J.S.2


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