An analysis of new expert knowledge scaling methods for biologically inspired computing

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5778 LNAI, Issue PART 2, 2011, Pages 286-293

  Gilmore, Jason M ^a   Greene, Casey S ^a   Andrews, Peter C ^a   Kiralis, Jeff ^a   Moore, Jason H ^a  

^a DARTMOUTH COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANT COLONY OPTIMIZATION STRATEGY; ANT SYSTEMS; BIOLOGICALLY INSPIRED; DATA SETS; EXHAUSTIVE SEARCHING; EXPERT KNOWLEDGE; EXPONENTIAL DISTRIBUTIONS; GENE-GENE INTERACTION; GENETIC VARIATION; GENOTYPING; HEURISTIC INFORMATION; HIGH-THROUGHPUT; PAIRWISE INTERACTION; PARAMETER SET; SCALING METHOD; SEARCH METHOD;

DISTRIBUTION FUNCTIONS; PROBABILITY DISTRIBUTIONS;

GENES;

EID: 79959928429     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-21314-4_36     Document Type: Conference Paper

References (11)

1. Bateson, W.: Facts limiting the theory of heredity. Science 26(672), 649-660 (1907)
2. Jacquard, A.: Heritability: One word, three concepts. Biometrics, 465-477 (1983)
3. Greene, C.S., White, B.C., Moore, J.H.: Ant colony optimization for genomewide genetic analysis. In: Dorigo, M., Birattari, M., Blum, C., Clerc, M., Stützle, T., Winfield, A.F.T. (eds.) ANTS 2008. LNCS, vol. 5217, pp. 37-47. Springer, Heidelberg (2008)
4. Moore, J.H., Gilbert, J.C., Tsai, C.T., Chiang, F.T., Holden, T., Barney, N.,White, B.C.: A flexible computational framework for detecting, characterizing, and interpreting statistical patterns of epistasis in genetic studies of human disease susceptibility. Journal of Theoretical Biology 241(2), 252-261 (2006)
5. Cho, Y.M., Ritchie, M.D., Moore, J.H., Park, J.Y., Lee, K.U., Shin, H.D., Lee, H.K., Park, K.S.: Multifactor-dimensionality reduction shows a two-locus interaction associated with type 2 diabetes mellitus. Diabetologia 47, 549-554 (2004)
6. Brassat, D., Motsinger, A., Caillier, S., Erlich, H., Walker, K., Steiner, L., Cree, B., Barcellos, L., Pericak-Vance, M., Schmidt, S., et al.: Multifactor dimensionality reduction reveals gene-gene interactions associated with multiple sclerosis susceptibility in African Americans. Genes and Immunity 7(4), 310-315 (2006)
7. Manuguerra, M., Matullo, G., Veglia, F., Autrup, H., Dunning, A., Garte, S., Gormally, E., Malaveille, C., Guarrera, S., Polidoro, S., et al.: Multi-factor dimensionality reduction applied to a large prospective investigation on gene-gene and gene-environment interactions. Carcinogenesis 28(2), 414 (2007)
8. Greene, C.S., Gilmore, J.M., Kiralis, J., Andrews, P.C., Moore, J.H.: Optimal use of expert knowledge in ant colony optimization for the analysis of epistasis in human disease. In: Pizzuti, C., Ritchie, M.D., Giacobini, M. (eds.) EvoBIO 2009. LNCS, vol. 5483, pp. 92-103. Springer, Heidelberg (2009)
9. Moore, J.H., White, B.C.: Tuning reliefF for genome-wide genetic analysis. In: Marchiori, E., Moore, J.H., Rajapakse, J.C. (eds.) EvoBIO 2007. LNCS, vol. 4447, pp. 166-175. Springer, Heidelberg (2007)
10. Harrell Jr, F.E.: Design: Design Package (2007)
11. R Development Core Team: R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria (2008)